BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= YJL210W__[Saccharomyces_cerevisiae]
(271 letters)
Database: nr.pal
6,348,806 sequences; 2,166,943,470 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|6322250|ref|NP_012325.1| RING-finger peroxin, peroxisoma... 553 e-156
gi|50290185|ref|XP_447524.1| hypothetical protein CAGL0I062... 204 5e-51
gi|156848071|ref|XP_001646918.1| hypothetical protein Kpol_... 202 2e-50
gi|45185136|ref|NP_982853.1| ABL094Wp [Ashbya gossypii ATCC... 189 2e-46
gi|50306237|ref|XP_453090.1| unnamed protein product [Kluyv... 87 9e-16
gi|149941270|emb|CAO02572.1| peroxisomal membrane protein [... 86 2e-15
gi|150951555|ref|XP_001387892.2| peroxisome assembly protei... 56 2e-06
gi|50418769|ref|XP_457905.1| hypothetical protein DEHA0C057... 53 2e-05
gi|56605902|ref|NP_001008454.1| peroxin 2 [Gallus gallus] >... 53 2e-05
gi|126321254|ref|XP_001377812.1| PREDICTED: similar to Pero... 52 3e-05
gi|68482168|ref|XP_714968.1| peroxisomal import RING finger... 52 3e-05
gi|154152035|ref|NP_001093818.1| peroxin 2 [Bos taurus] >gi... 52 5e-05
gi|149721437|ref|XP_001490672.1| PREDICTED: similar to Pero... 52 6e-05
gi|51173179|gb|AAT97412.1| peroxin 2 [Pichia angusta] 51 1e-04
gi|115462951|ref|NP_001055075.1| Os05g0275700 [Oryza sativa... 50 2e-04
gi|129555|sp|P24392|PEX2_RAT Peroxisome assembly factor 1 (... 50 2e-04
gi|8394121|ref|NP_058930.1| peroxin 2 [Rattus norvegicus] >... 49 3e-04
gi|2501728|sp|Q01964|PEX2_PICPA Peroxisomal biogenesis fact... 49 4e-04
gi|73999496|ref|XP_544136.2| PREDICTED: similar to Peroxiso... 49 4e-04
gi|74138870|dbj|BAE27238.1| unnamed protein product [Mus mu... 48 7e-04
gi|1709556|sp|P55098|PEX2_MOUSE Peroxisome assembly factor ... 48 9e-04
gi|157340191|emb|CAO45868.1| unnamed protein product [Vitis... 47 0.001
gi|146414345|ref|XP_001483143.1| hypothetical protein PGUG_... 47 0.001
gi|167774173|gb|ABZ92521.1| peroxisomal membrane protein 3,... 47 0.001
gi|119607458|gb|EAW87052.1| peroxisomal membrane protein 3,... 47 0.001
gi|4506343|ref|NP_000309.1| peroxin 2 [Homo sapiens] >gi|12... 47 0.001
gi|1209744|gb|AAC49423.1| Pay5p 47 0.002
gi|148673269|gb|EDL05216.1| peroxisomal membrane protein 3,... 46 0.002
gi|21687248|ref|NP_033020.2| peroxin 2 [Mus musculus] >gi|2... 46 0.003
gi|18412518|ref|NP_565222.1| TED3 (REVERSAL OF THE DET PHEN... 46 0.003
gi|12653751|gb|AAH00661.1| Peroxisomal membrane protein 3, ... 46 0.003
gi|42572185|ref|NP_974183.1| TED3 (REVERSAL OF THE DET PHEN... 45 0.004
gi|68404207|ref|XP_684073.1| PREDICTED: similar to Peroxiso... 45 0.006
gi|109086793|ref|XP_001089931.1| PREDICTED: similar to Pero... 45 0.008
gi|62857417|ref|NP_001016841.1| peroxin 2 [Xenopus tropical... 44 0.008
gi|21537047|gb|AAM61388.1| putative RING finger protein [Ar... 44 0.009
gi|50554873|ref|XP_504845.1| YlPEX2 [Yarrowia lipolytica] >... 44 0.009
gi|114620746|ref|XP_519817.2| PREDICTED: peroxisomal membra... 44 0.013
gi|548450|sp|Q06438|PEX2_CRIGR Peroxisome assembly factor 1... 42 0.033
gi|149247404|ref|XP_001528114.1| conserved hypothetical pro... 42 0.040
gi|146332641|gb|ABQ22826.1| peroxisome assembly factor 1-li... 42 0.053
gi|157113458|ref|XP_001657838.1| hypothetical protein AaeL_... 41 0.087
gi|116182192|ref|XP_001220945.1| hypothetical protein CHGG_... 41 0.095
gi|109469367|ref|XP_342603.3| PREDICTED: similar to regulat... 39 0.35
gi|1705594|sp|P51021|PEX2_PODAN Peroxisomal biogenesis fact... 39 0.39
gi|27819902|gb|AAL29060.2| LD46714p [Drosophila melanogaster] 39 0.42
gi|47223455|emb|CAF97942.1| unnamed protein product [Tetrao... 39 0.46
gi|55778571|gb|AAH86436.1| Rtel1 protein [Rattus norvegicus] 39 0.47
gi|85113877|ref|XP_964597.1| peroxisomal biogenesis factor ... 39 0.49
gi|21355975|ref|NP_648210.1| CG7081 CG7081-PA [Drosophila m... 38 0.69
gi|39974397|ref|XP_368589.1| hypothetical protein MGG_00655... 38 0.73
gi|145255139|ref|XP_001398873.1| hypothetical protein An18g... 38 0.73
gi|125980125|ref|XP_001354095.1| GA20087-PA [Drosophila pse... 37 1.5
gi|121703069|ref|XP_001269799.1| peroxisome biosynthesis pr... 37 1.6
gi|158288010|ref|XP_309872.4| AGAP010836-PA [Anopheles gamb... 37 1.9
gi|158287379|ref|XP_001688187.1| AGAP011217-PA [Anopheles g... 37 2.0
gi|167392798|ref|XP_001740301.1| hypothetical protein EDI_3... 36 2.2
gi|116000654|emb|CAL50334.1| vacuolar transporter chaperone... 36 2.7
gi|157110039|ref|XP_001650927.1| peroxisomal membrane prote... 35 4.4
gi|111609715|gb|ABH11413.1| peroxin 2 [Penicillium chrysoge... 35 4.8
gi|168059690|ref|XP_001781834.1| predicted protein [Physcom... 35 6.0
gi|70608046|ref|YP_256916.1| hypothetical protein Saci_2341... 35 6.9
>gi|6322250|ref|NP_012325.1| RING-finger peroxin, peroxisomal membrane protein with a C-terminal
zinc-binding RING domain, forms translocation subcomplex
with Pex10p and Pex12p which functions in peroxisomal
matrix protein import; Pex2p [Saccharomyces cerevisiae]
gi|416843|sp|P32800|PEX2_YEAST Peroxisomal biogenesis factor 2 (Peroxin-2) (Peroxisomal protein
PAS5) (Protein CRT1)
gi|171320|gb|AAB36836.1| pas5 [Saccharomyces cerevisiae]
gi|496951|emb|CAA84000.1| ORF [Saccharomyces cerevisiae]
gi|1015594|emb|CAA89508.1| PAS5 [Saccharomyces cerevisiae]
gi|151944926|gb|EDN63181.1| peroxin [Saccharomyces cerevisiae YJM789]
Length = 271
Score = 553 bits (1426), Expect = e-156, Method: Composition-based stats.
Identities = 271/271 (100%), Positives = 271/271 (100%)
Query: 1 MSRVAQLDSIALDKELYGQFWSEFNAAFNTSEHKEEWELALNTVVFMCATRFLPHYGSSC 60
MSRVAQLDSIALDKELYGQFWSEFNAAFNTSEHKEEWELALNTVVFMCATRFLPHYGSSC
Sbjct: 1 MSRVAQLDSIALDKELYGQFWSEFNAAFNTSEHKEEWELALNTVVFMCATRFLPHYGSSC 60
Query: 61 TYGSALSGVVFQCRKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMMWLKLYKWVNLLYH 120
TYGSALSGVVFQCRKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMMWLKLYKWVNLLYH
Sbjct: 61 TYGSALSGVVFQCRKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMMWLKLYKWVNLLYH 120
Query: 121 GCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQN 180
GCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQN
Sbjct: 121 GCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQN 180
Query: 181 RQLLWNALLELFSNTLLTKRGLLTFVKKPPRSRSTTTYKTVCPRCGGFPTNPYQIACCRA 240
RQLLWNALLELFSNTLLTKRGLLTFVKKPPRSRSTTTYKTVCPRCGGFPTNPYQIACCRA
Sbjct: 181 RQLLWNALLELFSNTLLTKRGLLTFVKKPPRSRSTTTYKTVCPRCGGFPTNPYQIACCRA 240
Query: 241 NYCYVCVVKALEWSMCDACGSSGRLTASPVY 271
NYCYVCVVKALEWSMCDACGSSGRLTASPVY
Sbjct: 241 NYCYVCVVKALEWSMCDACGSSGRLTASPVY 271
>gi|50290185|ref|XP_447524.1| hypothetical protein CAGL0I06292g [Candida glabrata CBS138]
gi|49526834|emb|CAG60461.1| unnamed protein product [Candida glabrata CBS 138]
Length = 258
Score = 204 bits (519), Expect = 5e-51, Method: Composition-based stats.
Identities = 110/262 (41%), Positives = 164/262 (62%), Gaps = 12/262 (4%)
Query: 1 MSRVAQLDSIALDKELYGQFWSEFNAAFNTSEHKEEWELALNTVVFMCATRFLPHYGSSC 60
MSRVAQLDS+ LD+E+ W+ F F S++ EE + L +VF+C ++ + ++
Sbjct: 1 MSRVAQLDSVVLDQEVDHLIWNIFQKDFKVSKYAEECQFLLRCLVFICGSKSVDGVNTT- 59
Query: 61 TYGSALSGVVFQCRKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMMWLKLYKWVNLLYH 120
TYGS LSGV + CRKRTL+V +L Y+++K++++ F+ + + L+LY+W++ LY
Sbjct: 60 TYGSRLSGVYYLCRKRTLFVSNILIHYLYRKLSNLYFSSNNISERT--LRLYRWISTLYG 117
Query: 121 GCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQN 180
D+T FLRFL ++G +LS R + ++ + S FY ++V+AGLEYQN
Sbjct: 118 VLDLTTFLRFLLSDGNTK--YLSLTNRLLGIVTSVDMLS----PSSFYQDTVYAGLEYQN 171
Query: 181 RQLLWNALLELFSNTLLTKRGLLTFVKKPPRSRSTTTYKTVCPRCGGFPTNPYQIACCRA 240
RQLLWNALLE+F++TL+ L +K R +T CP C GFP NPY+ +CCRA
Sbjct: 172 RQLLWNALLEVFNSTLMNSNKYLWDTRK---KRDKPANETTCPECNGFPVNPYRSSCCRA 228
Query: 241 NYCYVCVVKALEWSMCDACGSS 262
NYCY+C +KAL C CG++
Sbjct: 229 NYCYICGMKALAREHCTNCGNT 250
>gi|156848071|ref|XP_001646918.1| hypothetical protein Kpol_2000p24 [Vanderwaltozyma polyspora DSM
70294]
gi|156117600|gb|EDO19060.1| hypothetical protein Kpol_2000p24 [Vanderwaltozyma polyspora DSM
70294]
Length = 264
Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats.
Identities = 110/273 (40%), Positives = 165/273 (60%), Gaps = 11/273 (4%)
Query: 1 MSRVAQLDSIALDKELYGQFWSEFNAAFNTSEHKEEWELALNTVVFMCATRFLPHYGSSC 60
MSRVA DS+ LD EL+ +W EF N ++ EWE LN+++F+ +T + +
Sbjct: 1 MSRVAVFDSLELDNELHDLYWREFKQNLNIRNNEHEWEFLLNSIIFLFST-YKKGNNLTT 59
Query: 61 TYGSAL-SGVVFQCRKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMMWLKLYKWVNLLY 119
TY L S +F K+TL+V+T+L Y+ KK+ H+I+N N+ + L L W N +Y
Sbjct: 60 TYALELTSNNLFNATKKTLFVITILKNYINKKLQHLIYNN---SNESL-LYLLHWFNKIY 115
Query: 120 HGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQ 179
D+ NFL+FL++ N+ F+SP++R NV TR + S S+FY N+V + L++Q
Sbjct: 116 SLLDLINFLKFLSSFN-NSHLFISPIHRLLNVPITRTNLESS---SDFYQNTVVSNLQFQ 171
Query: 180 NRQLLWNALLELFSNTLLTKRGLLTFVKKPPRSRSTT-TYKTVCPRCGGFPTNPYQIACC 238
NRQLLWN++LELF+ TLL L KP + ++ + T T+C RC FP+ PY+ CC
Sbjct: 172 NRQLLWNSILELFNMTLLNNSAWLQRKFKPMKLKNKSLTDSTICTRCDEFPSQPYRFQCC 231
Query: 239 RANYCYVCVVKALEWSMCDACGSSGRLTASPVY 271
++ YCY+C +K L+ S+C CG L A P+Y
Sbjct: 232 QSLYCYICTIKTLDLSICQNCGKDNNLKAVPLY 264
>gi|45185136|ref|NP_982853.1| ABL094Wp [Ashbya gossypii ATCC 10895]
gi|44980772|gb|AAS50677.1| ABL094Wp [Ashbya gossypii ATCC 10895]
Length = 257
Score = 189 bits (479), Expect = 2e-46, Method: Composition-based stats.
Identities = 107/271 (39%), Positives = 154/271 (56%), Gaps = 21/271 (7%)
Query: 1 MSRVAQLDSIALDKELYGQFWSEFNAAFNTSEHKEEWELALNTVVFMCATRFLPHYGSSC 60
MSRVAQLDS+ALD EL+ WSEF + F ++ +EW+L L+T+++ +T
Sbjct: 1 MSRVAQLDSLALDSELHQGIWSEFQSQFKPVKYIDEWQLLLHTLIYHFSTH--TSVAGVS 58
Query: 61 TYGSALSGVVFQCRKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMMWLKLYKWVNLLYH 120
TYGS LSGV ++ K TL++VTVL Y+ KK++ ++ + + KLY+ YH
Sbjct: 59 TYGSQLSGVTYRTSKSTLFLVTVLVRYIHKKLSTLLVR------REGYAKLYRVAAKWYH 112
Query: 121 GCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQN 180
D+ NFL FLA FLSP++R F + R + D FY ++V++GLE+QN
Sbjct: 113 CYDLANFLSFLARP-----LFLSPIHRLFGIRCVRALDD-----PNFYLSTVYSGLEFQN 162
Query: 181 RQLLWNALLELFSNTLLTKRGLLTFVKKPPRSRSTTTYKTVCPRCGGFPTNPYQIACCRA 240
RQL+WNALLEL + F K+ + T C +C P NPY +CC A
Sbjct: 163 RQLMWNALLELLNANFFNSH---FFSKRSLVKNARPTGPEECAKCRDVPNNPYSTSCCGA 219
Query: 241 NYCYVCVVKALEWSMCDACGSSGRLTASPVY 271
YCYVCV+ +L+ C+ CG+ G +A P+Y
Sbjct: 220 TYCYVCVLISLDIKFCNNCGNRGDFSAIPLY 250
>gi|50306237|ref|XP_453090.1| unnamed protein product [Kluyveromyces lactis]
gi|49642224|emb|CAH00186.1| unnamed protein product [Kluyveromyces lactis NRRL Y-1140]
Length = 244
Score = 87.4 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 76/281 (27%), Positives = 116/281 (41%), Gaps = 64/281 (22%)
Query: 1 MSRVAQLDSIALDKELYGQFWSEFNAAFNTSEHKEEWELALNTVVFMCATRFLPHYGSSC 60
MSRVAQLD ++LD +L S+ ++ + +VF+ +R H GS
Sbjct: 1 MSRVAQLDGVSLDLQLTRALQSDLGFPCP--------QIVVEILVFLLGSRRW-HQGSVA 51
Query: 61 TYGSALSGVVFQCRKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMMWLKLYKWVNLLYH 120
TYGS L+GV +QC + L+ VTV+ ++ L ++ NL+Y
Sbjct: 52 TYGSVLTGVGYQCSRWRLFAVTVVLRHL--------------------LHRFERTNLVYE 91
Query: 121 GCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQN 180
D+ + L+FL + G + L RL R + F + +G
Sbjct: 92 LLDLIHLLQFLTS-GTGGPSLLH-----------RLFRVPAVFQPGFSYSDTTSGSSASE 139
Query: 181 RQLLWNALLELFSNTLLTKRGLLTF--------------------VKKPPRSRSTTTYKT 220
Q+LWNA +E+ + L K G ++ V P S T
Sbjct: 140 VQMLWNASIEMIAGLSLFKNGFVSVTSTNAAAVAAAKAIAGGSSSVGAPGEKFSQKN--T 197
Query: 221 VCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSMCDACGS 261
+CP CG TN + I CC YCY C ++ +E S C C +
Sbjct: 198 LCPVCGEVATNAFTITCCNTRYCYTCALE-VEQSHCLVCNT 237
>gi|149941270|emb|CAO02572.1| peroxisomal membrane protein [Kluyveromyces waltii]
gi|149941276|emb|CAO02577.1| peroxisomal membrane protein [Kluyveromyces waltii]
Length = 222
Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 68/237 (28%), Positives = 114/237 (48%), Gaps = 21/237 (8%)
Query: 4 VAQLDSIALDKELYGQFWSEFNAAFNTSEHKEEWELALNTVVFMCATRFLPHYGSSCTYG 63
V Q+D LD +L Q WS + S H E L+ + F +T ++ TYG
Sbjct: 3 VNQVDGNKLDIDLDDQLWSLLSTKLKPSSHTSEIRFLLSALTFYLSTT--SDNINTLTYG 60
Query: 64 SALSGVVFQCRKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMMWLKLYKWVNLLYHGCD 123
S+L+G ++ KRTL++ VL+ ++ +K ++N + +LK+Y ++ +
Sbjct: 61 SSLTGTCYKTTKRTLFIANVLSPFLLQKFQTYVYN-----SGASFLKVYNLLHKIATVWS 115
Query: 124 VTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQNRQL 183
+T FL+ ++ P FLS L++ + + S+FY NSV A +E+QN QL
Sbjct: 116 LTTFLKLISGNNP---PFLSLLHKLLRIQAIPYTN------SDFYQNSVNASIEFQNTQL 166
Query: 184 LWNALLELFSNTLLTKRGLLTFVKKPPRSRSTTTYKTV----CPRCGGFPTNPYQIA 236
L L NT + LL F+ K ++ +T+ CP+C PT PY+ +
Sbjct: 167 L-YNALLQLLNTHIIGSSLLKFLTKRQSGQTKHQKQTIQIRNCPQCNEIPTIPYKTS 222
>gi|150951555|ref|XP_001387892.2| peroxisome assembly protein (Peroxin-2) [Pichia stipitis CBS 6054]
gi|149388691|gb|EAZ63869.2| peroxisome assembly protein (Peroxin-2) [Pichia stipitis CBS 6054]
Length = 399
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 77/309 (24%), Positives = 121/309 (39%), Gaps = 82/309 (26%)
Query: 3 RVAQLDSIALDKELYG----QFWSEF----NAAFNTSEHKEEWELALNTVVFMCATRFLP 54
RV+QLD+ LD EL Q S F N+ F+ S++ E W L LN +VF L
Sbjct: 10 RVSQLDAHILDSELLSLLKEQLASIFQLHTNSRFSYSQNPELWSLLLNVLVFK-----LT 64
Query: 55 HYGSSCTYGSALSGV---------VFQCRKRTLYVVTVLAGYVWKKITHIIFN------- 98
+ S +YG AL + + KR+L + ++ Y++ K+ +++
Sbjct: 65 VWKSGSSYGLALQNLKLTDSKTNKLIGVSKRSLLLALLVGDYLYSKLQSYLYSLDDNDRS 124
Query: 99 GPHCGNQMMWLKLYKWVNLL---------YHGCDVTNFLRFLAAEGPNARAFLSPLYRAF 149
P+ +K Y + N + ++ NF+ FL N + + S ++RA
Sbjct: 125 EPYSFALFNRVKSYVYRNRTALISSVDNGFKTLNLINFMLFLV----NGK-YPSLIHRAL 179
Query: 150 NVHSTRLIRDGSAIASEFYS-NSVFAGLEYQNRQLLWNALLELFSNTLLT---------K 199
+ T IAS+ N E+QNRQL+WN + E L
Sbjct: 180 RITMT-------PIASDLLRFNGSNVNFEFQNRQLVWNVMTEFLVFLLPLLQLNKLRKMA 232
Query: 200 RGLLTFVKKPPRSRSTTTYKTV----CPRC-----------------GGFPTNPYQIACC 238
R L+ K ++ + Y + C C G TNPY + C
Sbjct: 233 RQALSTSKSQEKTTIISPYTNLPLSQCAICHDNNNQAAASGMKSFTTSGNITNPY-VTNC 291
Query: 239 RANYCYVCV 247
YCYVC+
Sbjct: 292 GHIYCYVCI 300
>gi|50418769|ref|XP_457905.1| hypothetical protein DEHA0C05720g [Debaryomyces hansenii CBS767]
gi|49653571|emb|CAG85956.1| unnamed protein product [Debaryomyces hansenii CBS767]
Length = 445
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 78/317 (24%), Positives = 120/317 (37%), Gaps = 90/317 (28%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAF---NTS-----EHKEEWELALNTVVFMCATRFLP 54
RV+QLD+ LD EL + + F +TS +H E W L LN +VF L
Sbjct: 10 RVSQLDANILDSELISLLKEQLTSIFQLHSTSWWTYDQHPELWSLLLNLMVFR-----LT 64
Query: 55 HYGSSCTYGSALS---------GVVFQCRKRTLYVVTVLAGYVWKKITHIIFN-----GP 100
+ S +YG+ L G + KRTL ++ Y + K+ +++
Sbjct: 65 VWRSGSSYGALLQNLKLTDFKKGKLIGYSKRTLLCAVLVGDYFYSKLQSYLYSIDESEAS 124
Query: 101 HCGNQMMWL------------KLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRA 148
+ L K+ +N + ++ NF FL N R + S +R
Sbjct: 125 RNASNFKLLNSIKSFFITHKTKILLGLNDCFKLLNLVNFTLFLV----NGR-YPSISHRL 179
Query: 149 FNVHSTRLIRDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFSNTL----------LT 198
F + T ++ D +F N V E+QNRQL+WN + E L +T
Sbjct: 180 FGISLTPIVTD----LLKFNGNKV--NFEFQNRQLVWNVMTEFLVFILPLMQLGKLKRMT 233
Query: 199 KRGLLTFVKKPPRSRST-----TTYKTV----CPRCGG-------------------FPT 230
K+ +L+ KK R + T Y + C C T
Sbjct: 234 KK-ILSPYKKGQRHETGDIPIFTPYTNLPVSQCAICHNNNDIAATSSNKNSSISSSCMVT 292
Query: 231 NPYQIACCRANYCYVCV 247
NPY + C YCY+C+
Sbjct: 293 NPY-VTNCGHIYCYICI 308
>gi|56605902|ref|NP_001008454.1| peroxin 2 [Gallus gallus]
gi|53127700|emb|CAG31179.1| hypothetical protein [Gallus gallus]
Length = 304
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 64/290 (22%), Positives = 114/290 (39%), Gaps = 51/290 (17%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F + F+ + E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTSCFHGFKPGVLAHIEPEVKAFLWLLLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G A+ + ++ ++ Y++ + G ++ + +F+ +
Sbjct: 75 TVGQAILNIQYKNNLSQTEKYQPLSKHQKLWYLIFTVGGRWLEERCYDLFSNRQLQSVS- 133
Query: 108 WLKLYKWVNL---LYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIA 164
K+ ++N L C + NFL FL F + R++ S
Sbjct: 134 --KIKHYINFGAGLLKLCGLVNFLIFLQKG-------------TFATLTERILGIRSVFC 178
Query: 165 SEFYSNSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRGL--------LTFVKKPPRSRS 214
V G EY NR+LLW+ E ++ L+ + L P ++
Sbjct: 179 KPQSVRQV--GFEYMNRELLWHGFAEFLIYLLPLINVQKLKLKICSWCFPIANLPNSDKT 236
Query: 215 TTTYKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
T+ VC CG +PT P+ I C +CY C+ + M C CGS
Sbjct: 237 LATHYKVCSLCGEWPTMPHTIGCSHV-FCYYCIKSNYLFDMYFTCPKCGS 285
>gi|126321254|ref|XP_001377812.1| PREDICTED: similar to Peroxisome assembly factor 1 (PAF-1)
(Peroxin-2) (Peroxisomal membrane protein 3) (35 kDa
peroxisomal membrane protein) (RING finger protein 72)
[Monodelphis domestica]
Length = 305
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 64/287 (22%), Positives = 115/287 (40%), Gaps = 45/287 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTHCFHGFKPGLLARLEPEVKAFLWLFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++ ++ Y + + G ++ + +F H +
Sbjct: 75 TVGQSIMNIQYKNNYSQTQKYQPLSKNQKLWYAICTVGGRWLEERCYDLFRNHHLAS--- 131
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ K+ + NL+ +++ + FL FL F + RL+ S
Sbjct: 132 FYKIKQCTNLIVGLLKLSSLVNFL--------IFLQK--GKFATLTERLLGIRSVFCKP- 180
Query: 168 YSNSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRGL--------LTFVKKPPRSRSTTT 217
N G EY NR+LLW+ E +F L+ + L + F P + T
Sbjct: 181 -QNIREVGFEYMNRELLWHGFAEFLIFLLPLINIQKLKAKLSSWCIPFTGVPNSDVTLAT 239
Query: 218 YKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
+ C CG +PT P+ I C +CY CV + + M C CG+
Sbjct: 240 HGKECSLCGEWPTMPHTIGCVHV-FCYYCVKSSYLFDMYFTCPKCGT 285
>gi|68482168|ref|XP_714968.1| peroxisomal import RING finger complex component Pex2 [Candida
albicans SC5314]
gi|68482295|ref|XP_714905.1| peroxisomal import RING finger complex component Pex2 [Candida
albicans SC5314]
gi|46436504|gb|EAK95865.1| likely peroxisomal import RING finger complex component Pex2
[Candida albicans SC5314]
gi|46436569|gb|EAK95929.1| likely peroxisomal import RING finger complex component Pex2
[Candida albicans SC5314]
Length = 420
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 81/302 (26%), Positives = 121/302 (40%), Gaps = 65/302 (21%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNT--------SEHKEEWELALNTVVFMCATRFLP 54
RV+QLD+ LD EL+ + ++ F S+H E + L LN ++F L
Sbjct: 10 RVSQLDAGILDSELFSLLKEQLSSIFQLHSTSRYSFSQHPELYSLLLNLLIFR-----LT 64
Query: 55 HYGSSCTYGSAL---------SGVVFQCRKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQ 105
+ S +YGS+L SG + ++ L ++ GY++KK+ +F Q
Sbjct: 65 VWKSGSSYGSSLQNLKLTDSRSGKIIGSSRKALLGAVIIGGYLYKKLESYLFFLDESSTQ 124
Query: 106 MMWLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIAS 165
L K N L + T+ L L A + +S+ + R I +
Sbjct: 125 NSHSTLDKLKNYLL--INRTSILSGLENSLKIANLVNFTFFLVNGQYSSLVNRILGIIET 182
Query: 166 EFYS-----NSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRGLLTFVKK-PPRSRST-- 215
S N E+QNRQL+WN + E +F LL R L +K RS+++
Sbjct: 183 PISSDLLKFNGSNVNYEFQNRQLVWNVMTEFLVFILPLLQLRKLGRMTRKLLGRSKNSLD 242
Query: 216 ---------TTYKTV----CPRC----------GG--FP-----TNPYQIACCRANYCYV 245
T+Y + C C GG FP TNPY I C YCYV
Sbjct: 243 VQSGNVPTLTSYTNLPVSECAICHDNNNQASQTGGRTFPSAGPVTNPY-ITNCGHVYCYV 301
Query: 246 CV 247
C+
Sbjct: 302 CI 303
>gi|154152035|ref|NP_001093818.1| peroxin 2 [Bos taurus]
gi|151554728|gb|AAI48002.1| LOC512677 protein [Bos taurus]
Length = 305
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 66/291 (22%), Positives = 113/291 (38%), Gaps = 53/291 (18%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKAFLWLFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQ------------CRKRTL-YVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + +Q R + L Y V + G ++ + +F H +
Sbjct: 75 TVGQSVLNIQYQNDLSPNLSYQPPSRNQKLWYAVCTIGGKWLEERCYDLFRNRHIASFRK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHST----RLIRDGSAI 163
+ V L + NFL FL F + R +HS + +R+
Sbjct: 135 AKQCMNLVVGLLKLGGLINFLIFL-----QRGKFATLTERLLGIHSVFHKPQSVRE---- 185
Query: 164 ASEFYSNSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRGL--------LTFVKKPPRSR 213
G EY NR+LLW+ E +F L+ + L + P +
Sbjct: 186 ----------VGFEYMNRELLWHGFAEFLIFLLPLINVQKLRAKLSSWCVPLTGAPGSNS 235
Query: 214 STTTYKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
+ T C CG +PT P+ + C +CY CV + + M C CG+
Sbjct: 236 TLATSGRQCSLCGEWPTMPHTVGCEHV-FCYYCVKSSFLFDMSFTCPKCGT 285
>gi|149721437|ref|XP_001490672.1| PREDICTED: similar to Peroxisome assembly factor 1 (PAF-1)
(Peroxin-2) (Peroxisomal membrane protein 3) (35 kDa
peroxisomal membrane protein) (RING finger protein 72)
[Equus caballus]
Length = 305
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 65/287 (22%), Positives = 111/287 (38%), Gaps = 45/287 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKAFLWLFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQ------------CRKRTL-YVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++ R + L Y V + G ++ + +F PH +
Sbjct: 75 TVGQSVLNIQYKNDFSPNPRYQPPSRNQKLWYAVCTIGGKWLEERCYDLFRNPHLASFRK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ +V + + NFL FL F + RL+ S
Sbjct: 135 AKQCVNFVVGILKLGGLINFLIFLQRG-------------KFATLTERLLGIRSVFCKP- 180
Query: 168 YSNSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRGL--------LTFVKKPPRSRSTTT 217
N G EY NR++LW+ E +F L+ + L + P + T
Sbjct: 181 -QNIREVGFEYMNREILWHGFAEFLIFLLPLINIQKLKAKLSSWCIPLTGAPNGDSTLAT 239
Query: 218 YKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
C CG +PT P+ I C +CY CV + + M C CG+
Sbjct: 240 SGRQCSLCGEWPTMPHTIG-CEHIFCYYCVKSSFLYDMYFTCPKCGT 285
>gi|51173179|gb|AAT97412.1| peroxin 2 [Pichia angusta]
Length = 366
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 76/336 (22%), Positives = 116/336 (34%), Gaps = 102/336 (30%)
Query: 2 SRVAQLDSIALDKELYGQFWSEFNAAFNT-----------SEHKEEWELALNTVVFMCAT 50
+RV Q+D+ LD E++ + N A + S + +E LAL VF
Sbjct: 9 NRVLQVDAKLLDNEIFDILAKQLNEAISNPKLPRFFQLLNSRYSDELRLALELCVFKVTI 68
Query: 51 RFLPHYGSSCTYGSALSGVVFQ----CRKRTLYVVTVLAGYV------------------ 88
+ S +YG L +V R+ T ++ L
Sbjct: 69 -----WNKSSSYGLLLQNLVMSDGGDRRRNTKSELSRLKKTALLSYLILSYLYKKLESHL 123
Query: 89 -------------WKKITHIIFNGPHCGNQMMWLKLYKWVNLLYHGCDVTNFLRFLA-AE 134
W + H+I Q + L KW Y G + NFL FL +
Sbjct: 124 YSLDADDEEDRTKWHQYVHMIM----ARLQRVLPTLQKW----YAGLSLANFLAFLIHGQ 175
Query: 135 GPNARAFLSPLYRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQNRQLLWNALLE---- 190
PN + R + L+ + F SN E+Q+RQL+WN L E
Sbjct: 176 YPNL------VNRVLRIRYKPLV----STQVSFASNPETISYEFQDRQLVWNTLTEFLVF 225
Query: 191 ---LFSNTLLTKRGLLTFVKKPPRSRSTTTYKTVCPRCGG-------------------F 228
+ S + L+K + + T Y+ + RC
Sbjct: 226 IMPILSMSKLSKSVVRLLQTDQKQDEKETIYRFLPERCCAICYQNTTRAGVADASIDEHL 285
Query: 229 PTNPYQIACCRANYCYVCVVKALE----WSMCDACG 260
TNP++ +C YCYVC++ LE W +C CG
Sbjct: 286 ITNPFETSCGHV-YCYVCLMAKLEDGDPW-LCLRCG 319
>gi|115462951|ref|NP_001055075.1| Os05g0275700 [Oryza sativa (japonica cultivar-group)]
gi|50878357|gb|AAT85132.1| putative peroxisome assembly protein 2 [Oryza sativa (japonica
cultivar-group)]
gi|113578626|dbj|BAF16989.1| Os05g0275700 [Oryza sativa (japonica cultivar-group)]
Length = 342
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 176 LEYQNRQLLWNALLELFS------NTLLTKRGLLTFVKKPPRSRSTTTYKTVCPRCGGFP 229
EY NRQL+WN E+ N+ K+ LL F K +S S++ + CP C P
Sbjct: 239 FEYMNRQLVWNEFSEMLLLLLPLLNSSSVKKFLLPFSKD--KSASSSGDEADCPICRSSP 296
Query: 230 TNPYQIACCRANYCYVCV 247
+ P++ C+ YCY C+
Sbjct: 297 SIPFEALPCQHRYCYYCL 314
>gi|129555|sp|P24392|PEX2_RAT Peroxisome assembly factor 1 (PAF-1) (Peroxin-2) (Peroxisomal
membrane protein 3)
gi|57645|emb|CAA41054.1| peroxisome assembly factor-1 [Rattus rattus]
gi|1109647|dbj|BAA06306.1| peroxisome assembly factor-1 [Rattus norvegicus]
gi|38649097|gb|AAH63169.1| Peroxisomal membrane protein 3 [Rattus norvegicus]
gi|149048497|gb|EDM01038.1| peroxisomal membrane protein 3, isoform CRA_a [Rattus norvegicus]
gi|149048498|gb|EDM01039.1| peroxisomal membrane protein 3, isoform CRA_a [Rattus norvegicus]
gi|149048499|gb|EDM01040.1| peroxisomal membrane protein 3, isoform CRA_a [Rattus norvegicus]
gi|227548|prf||1706355A peroxisome assembly factor 1
Length = 305
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 65/291 (22%), Positives = 117/291 (40%), Gaps = 53/291 (18%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKAFLWLFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++ ++ LY V + G ++ + +F H +
Sbjct: 75 TVGQSVLNIQYKNDSSPNPVYQPPSKNQKLLYAVCTIGGRWLEERCYDLFRNRHLASFGK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHST----RLIRDGSAI 163
+ +V L ++ NFL FL F + R +HS + +R+
Sbjct: 135 AKQCMNFVVGLLKLGELMNFLIFL-----QKGKFATLTERLLGIHSVFCKPQSMRE---- 185
Query: 164 ASEFYSNSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRGLLTFVKK--PPRSRSTTTYK 219
G EY NR+LLW+ E +F L+ + L + P + + +
Sbjct: 186 ----------VGFEYMNRELLWHGFAEFLVFLLPLINIQKLKAKLSSWCIPLTSTAGSDS 235
Query: 220 TV------CPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
T+ C CG +PT P+ I C +CY CV + + M C CG+
Sbjct: 236 TLGSSGKECALCGEWPTMPHTIGCEHV-FCYYCVKSSFLFDMYFTCPKCGT 285
>gi|8394121|ref|NP_058930.1| peroxin 2 [Rattus norvegicus]
gi|1109648|dbj|BAA06307.1| peroxisome assembly factor-1 [Rattus norvegicus]
Length = 305
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 65/291 (22%), Positives = 117/291 (40%), Gaps = 53/291 (18%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKAFLWLFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++ ++ LY V + G ++ + +F H +
Sbjct: 75 TVGQSVLNIQYKNDSSPNPVYQPPSKNQKLLYAVCTIGGRWLEERCYDLFPNRHLASFGK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHST----RLIRDGSAI 163
+ +V L ++ NFL FL F + R +HS + +R+
Sbjct: 135 AKQCMNFVVGLLKLGELMNFLIFL-----QKGKFATLTERLLGIHSVFCKPQSMRE---- 185
Query: 164 ASEFYSNSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRGLLTFVKK--PPRSRSTTTYK 219
G EY NR+LLW+ E +F L+ + L + P + + +
Sbjct: 186 ----------VGFEYMNRELLWHGFAEFLVFLLPLINIQKLKAKLSSWCIPLTSTAGSDS 235
Query: 220 TV------CPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
T+ C CG +PT P+ I C +CY CV + + M C CG+
Sbjct: 236 TLGSSGKECALCGEWPTMPHTIGCEHV-FCYYCVKSSFLFDMYFTCPKCGT 285
>gi|2501728|sp|Q01964|PEX2_PICPA Peroxisomal biogenesis factor 2 (Peroxin-2) (Peroxisomal protein
PER6)
gi|1321932|emb|CAA65646.1| peroxin-2 [Pichia pastoris]
Length = 461
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 77/331 (23%), Positives = 118/331 (35%), Gaps = 95/331 (28%)
Query: 2 SRVAQLDSIALDKELYGQFWSEFNAAFNT-----------SEHKEEWELALNTVVFMCAT 50
+RV QLD+ LD E+ + + + AFN+ S + E +L L ++F
Sbjct: 13 NRVLQLDAKLLDNEISDMLYRQLSGAFNSNRLPSWLGRIHSNYASELKLLLELLIFKVTV 72
Query: 51 RFLPHYGSSCTYGSALSGVV------------------FQCRKRTLYVVTVLAGYVWKKI 92
+ +YG L +V + K+ L + +VL GY KKI
Sbjct: 73 -----WNKHSSYGLTLQNLVMYDGGVHNKKFRSKQQSELRVTKKILLLSSVLLGYFVKKI 127
Query: 93 THIIF---------NGPHCGN----QMMWLKLYK-WVNLLYHGCDV---TNFLRFLAAEG 135
++ +G ++ +KL K ++ L V NF+ FL +
Sbjct: 128 QSYVYSFEDYDLETDGEDLSTLERIRLKTIKLLKSQISTLEKAHSVLSLVNFVTFLVSG- 186
Query: 136 PNARAFLSPLYRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFSNT 195
+F R N+ L+ A F SN E+QNRQL+WN L E
Sbjct: 187 ----SFPDLTTRILNIRFKPLVTTQVA----FASNPETISYEFQNRQLVWNTLTEFIVFI 238
Query: 196 L-------LTKRGLLTFVKKPPRSRSTTTY---------KTVCPRC-------------- 225
L TK + + P+S T + VC C
Sbjct: 239 LPALSVPKFTKSLVSSITGTSPKSSQVTDEDLKVFSSLPERVCAICFQNSQNSDSGAQND 298
Query: 226 ----GGFPTNPYQIACCRANYCYVCVVKALE 252
TNPY+ C YCYVC++ L+
Sbjct: 299 ISLNDTLVTNPYETTCGHI-YCYVCILSKLQ 328
>gi|73999496|ref|XP_544136.2| PREDICTED: similar to Peroxisome assembly factor-1 (PAF-1)
(Peroxin-2) (Peroxisomal membrane protein 3) (35 kDa
peroxisomal membrane protein) (RING finger protein 72)
[Canis familiaris]
Length = 305
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 63/287 (21%), Positives = 113/287 (39%), Gaps = 45/287 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L W++F F+ + +E + ++++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWAQFTQCFHGFKPGLLAHFEPEVKALLWLFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++ ++ Y V + G ++ + +F H +
Sbjct: 75 TVGQSVLNIQYKNDFSPKLRYQPPSKNQKLWYAVCTIGGTWLEERCYDLFRNRHLAS--- 131
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ K + VN++ + + FL FL F + RL+ S
Sbjct: 132 FGKARQCVNIMVGLLKLGGLINFLI--------FLQ--RGKFATLTERLLGIRSVFCKP- 180
Query: 168 YSNSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRGL--------LTFVKKPPRSRSTTT 217
N G EY NR+LLW+ E +F L+ + L + P + T
Sbjct: 181 -QNVREVGFEYMNRELLWHGFAEFLIFLLPLINIQKLKAKLSSWCIPLTGAPTSDNTLAT 239
Query: 218 YKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
C CG +PT P+ I C +CY CV + + M C CG+
Sbjct: 240 SGKQCSLCGEWPTMPHTIG-CEHIFCYYCVKSSFLFDMYFTCPKCGT 285
>gi|74138870|dbj|BAE27238.1| unnamed protein product [Mus musculus]
Length = 305
Score = 47.8 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 63/287 (21%), Positives = 110/287 (38%), Gaps = 45/287 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ LDK L WS+F F+ + +E + +++ RF Y +
Sbjct: 16 RISQLDALELDKALEQLVWSQFTQCFHGFKPGLLARFEPEVKAFLWLFLWRFTI-YSKNA 74
Query: 61 TYGSALSGV----------VFQCRKRT---LYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++Q +T Y V + G ++ + +F H +
Sbjct: 75 TVGQSVLNIQYKNDSSLNLIYQPPSKTQKLWYAVCTIGGKWLEERCYDLFRNRHLASFGK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ ++ L ++ NFL FL F + R +HS
Sbjct: 135 AKQFMNFLVGLLKLGELINFLIFL-----QKGKFATLTERLLGIHSVFCKP--------- 180
Query: 168 YSNSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRGL--------LTFVKKPPRSRSTTT 217
N G EY NR+LLW+ E +F L+ + L + + +
Sbjct: 181 -QNMREVGFEYMNRELLWHGFAEFLIFLLPLINIQKLKAKLSSWCIPLTGAAGHDSTLGS 239
Query: 218 YKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
C CG +PT P+ I C +CY CV + + + C CG+
Sbjct: 240 SGKECALCGEWPTMPHTIGCEHV-FCYYCVKSSFLFDIYFTCPKCGT 285
>gi|1709556|sp|P55098|PEX2_MOUSE Peroxisome assembly factor 1 (PAF-1) (Peroxin-2) (Peroxisomal
membrane protein 3)
gi|450862|gb|AAA21742.1| peroxisome assembly factor-1
Length = 305
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 67/291 (23%), Positives = 112/291 (38%), Gaps = 53/291 (18%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKAFLWLFLWRFTI-YSKNA 74
Query: 61 TYGSALSGV----------VFQC---RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + V+Q ++ LY V + G ++ + +F H +
Sbjct: 75 TVGQSVLNIQHKNDSSPNPVYQPPSKNQKLLYAVCTIGGRWLEERCYDLFRNRHLASFGK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ +V L ++ NFL FL F + R +HS
Sbjct: 135 AKQCMNFVVGLLKLGELMNFLIFL-----QKGKFATLTERLLGIHSVFCKP--------- 180
Query: 168 YSNSVFAGLEYQNRQLLWNALLELFSNTLLTKRGLLTFVKKPPRSRSTTTYKT------- 220
N G EY NR+LLW+ F+ L+ L+ K + S T T
Sbjct: 181 -QNMREVGFEYMNRELLWHG----FAEFLIFLLPLINIQKLKAKLSSWCTLCTGAAGHDS 235
Query: 221 -------VCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
C CG +PT P+ I C +CY CV + + + C CG+
Sbjct: 236 TLGSSGKECALCGEWPTMPHTIGCEHV-FCYYCVKSSFLFDIYFTCPKCGT 285
>gi|157340191|emb|CAO45868.1| unnamed protein product [Vitis vinifera]
Length = 346
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 176 LEYQNRQLLWNALLELFS------NTLLTKRGLLTFVKKPPRSRSTTTYKTVCPRCGGFP 229
EY NRQL+WN E+ N+ + L F K +S S+ +T CP C P
Sbjct: 235 FEYMNRQLVWNEFSEMLLLLLPLLNSSSIRNFLRPFSKN--KSSSSEGDETACPICQASP 292
Query: 230 TNPYQIACCRANYCYVCV 247
T P+ C YCY C+
Sbjct: 293 TIPFLALPCEHRYCYYCL 310
>gi|146414345|ref|XP_001483143.1| hypothetical protein PGUG_05098 [Pichia guilliermondii ATCC 6260]
gi|146392842|gb|EDK41000.1| hypothetical protein PGUG_05098 [Pichia guilliermondii ATCC 6260]
Length = 402
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 69/310 (22%), Positives = 113/310 (36%), Gaps = 76/310 (24%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNA------AFNTSEHKEE-WELALNTVVFMCATRFLPH 55
RV+QLD+ LD EL + ++ + T E + E W L LN VVF L
Sbjct: 10 RVSQLDADILDSELVSLLKQQLSSISHLHRGWWTYELQPELWSLLLNLVVFR-----LTV 64
Query: 56 YGSSCTYGSAL---------SGVVFQCRKRTLYVVTVLAGYVWKKITHIIFN---GPHCG 103
+ +YG L +G + KRT + ++ Y++ K +++
Sbjct: 65 WKKGTSYGLGLQNLQLSNFKNGKIIGYSKRTALLAVIIGDYLFTKFQSYLYSVDEADVAD 124
Query: 104 NQMMWLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAF---------LSPLYRAFNVHST 154
+ L+ V L +TN + L + + R +S Y +H
Sbjct: 125 AEKSSFALFGTVKRLI----LTNRTKILTSVSSSLRVLNLVNFTLFLISGRYSTL-IHRV 179
Query: 155 RLIRDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFSNTL----------LTKRGLLT 204
I ++ N E+QNRQL+WN + E L ++ + LL
Sbjct: 180 LGISLTPVVSDLLKFNGSNVNFEFQNRQLVWNTMTEFLVFILPLLQLKKLRRMSSKMLLP 239
Query: 205 FVKKPPRSRSTTTYKTV--------CPRC------------------GGFP-TNPYQIAC 237
+ KK +S+ T+ + C C FP TNP+ +
Sbjct: 240 YRKKAKKSQDEETFSSAYSNLPISQCAICHNNSEKRARSLGKTPSSLSSFPITNPH-VTN 298
Query: 238 CRANYCYVCV 247
C YCY+C+
Sbjct: 299 CGHIYCYICI 308
>gi|167774173|gb|ABZ92521.1| peroxisomal membrane protein 3, 35kDa (Zellweger syndrome)
[synthetic construct]
Length = 305
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 63/291 (21%), Positives = 111/291 (38%), Gaps = 53/291 (18%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKACLWVFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++ ++ Y V + G ++ + +F H +
Sbjct: 75 TVGQSVLNIKYKNDFSPNLRYQPPSKNQKIWYAVCTIGGRWLEERCYDLFRNHHLASFGK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHST----RLIRDGSAI 163
+ +V L + NFL FL F + R +HS + IR+
Sbjct: 135 VKQCVNFVIGLLKLGGLINFLIFL-----QRGKFATLTERLLGIHSVFCKPQNIRE---- 185
Query: 164 ASEFYSNSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRGL--------LTFVKKPPRSR 213
G EY NR+LLW+ E +F L+ + L + P
Sbjct: 186 ----------VGFEYMNRELLWHGFAEFLIFLLPLINVQKLKAKLSSWCIPLTGAPNSDN 235
Query: 214 STTTYKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
+ T C CG +PT P+ I C +CY C + + + C CG+
Sbjct: 236 TLATSGKECALCGEWPTMPHTIG-CEHIFCYFCAKSSFLFDVYFTCPKCGT 285
>gi|119607458|gb|EAW87052.1| peroxisomal membrane protein 3, 35kDa (Zellweger syndrome) [Homo
sapiens]
Length = 305
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 62/287 (21%), Positives = 108/287 (37%), Gaps = 45/287 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKACLWVFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++ ++ Y V + G ++ + +F H +
Sbjct: 75 TVGQSVLNIKYKNDFSPNLRYQPPSKNQKIWYAVCTIGGRWLEERCYDLFRNHHLASFGK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ +V L + NFL FL F + R +HS
Sbjct: 135 VKQCVNFVIGLLKLGGLINFLIFL-----QRGKFATLTERLLGIHSVFCKP--------- 180
Query: 168 YSNSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRGL--------LTFVKKPPRSRSTTT 217
N G EY NR+LLW+ E +F L+ + L + P + T
Sbjct: 181 -QNICEVGFEYMNRELLWHGFAEFLIFLLPLINVQKLKAKLSSWCIPLTGAPNSDNTLAT 239
Query: 218 YKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
C CG +PT P+ I C +CY C + + + C CG+
Sbjct: 240 SGKECALCGEWPTMPHTIG-CEHIFCYFCAKSSFLFDVYFTCPKCGT 285