BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= YJL210W__[Saccharomyces_cerevisiae]
(271 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
6,899,187 sequences; 2,350,152,223 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_012325.1| RING-finger peroxin, peroxisomal membrane ... 553 e-156
ref|XP_447524.1| hypothetical protein CAGL0I06292g [Candida... 204 6e-51
ref|XP_001646918.1| hypothetical protein Kpol_2000p24 [Vand... 202 2e-50
ref|NP_982853.1| ABL094Wp [Ashbya gossypii ATCC 10895] >gi|... 189 3e-46
ref|XP_453090.1| unnamed protein product [Kluyveromyces lac... 87 9e-16
emb|CAO02572.1| peroxisomal membrane protein [Kluyveromyces... 86 2e-15
ref|XP_001387892.2| peroxisome assembly protein (Peroxin-2)... 56 2e-06
ref|XP_457905.1| hypothetical protein DEHA0C05720g [Debaryo... 53 2e-05
ref|NP_001008454.1| peroxin 2 [Gallus gallus] >gi|53127700|... 53 2e-05
ref|XP_001377812.1| PREDICTED: similar to Peroxisome assemb... 52 3e-05
ref|XP_714968.1| peroxisomal import RING finger complex com... 52 4e-05
ref|NP_001093818.1| peroxin 2 [Bos taurus] >gi|151554728|gb... 52 5e-05
ref|XP_001490672.1| PREDICTED: similar to Peroxisome assemb... 52 7e-05
gb|AAT97412.1| peroxin 2 [Pichia angusta] 51 1e-04
ref|NP_001055075.1| Os05g0275700 [Oryza sativa (japonica cu... 50 2e-04
sp|P24392|PEX2_RAT Peroxisome assembly factor 1 (PAF-1) (Pe... 50 2e-04
ref|NP_058930.1| peroxin 2 [Rattus norvegicus] >gi|1109648|... 49 3e-04
sp|Q01964|PEX2_PICPA Peroxisomal biogenesis factor 2 (Perox... 49 4e-04
ref|XP_544136.2| PREDICTED: similar to Peroxisome assembly ... 49 4e-04
dbj|BAE27238.1| unnamed protein product [Mus musculus] 48 8e-04
sp|P55098|PEX2_MOUSE Peroxisome assembly factor 1 (PAF-1) (... 48 0.001
emb|CAO45868.1| unnamed protein product [Vitis vinifera] 47 0.001
ref|XP_001483143.1| hypothetical protein PGUG_05098 [Pichia... 47 0.001
gb|ABZ92521.1| peroxisomal membrane protein 3, 35kDa (Zellw... 47 0.001
ref|NP_000309.1| peroxin 2 [Homo sapiens] >gi|121114290|ref... 47 0.001
gb|EAW87052.1| peroxisomal membrane protein 3, 35kDa (Zellw... 47 0.001
gb|AAC49423.1| Pay5p 47 0.002
gb|EDL05216.1| peroxisomal membrane protein 3, isoform CRA_... 46 0.003
ref|NP_033020.2| peroxin 2 [Mus musculus] >gi|2623264|gb|AA... 46 0.003
ref|NP_565222.1| TED3 (REVERSAL OF THE DET PHENOTYPE); prot... 46 0.003
gb|AAH00661.1| Peroxisomal membrane protein 3, 35kDa (Zellw... 46 0.003
ref|NP_974183.1| TED3 (REVERSAL OF THE DET PHENOTYPE); prot... 45 0.004
ref|XP_684073.1| PREDICTED: similar to Peroxisome assembly ... 45 0.007
ref|XP_001089931.1| PREDICTED: similar to Peroxisome assemb... 45 0.008
ref|NP_001016841.1| peroxin 2 [Xenopus tropicalis] >gi|8927... 44 0.009
gb|AAM61388.1| putative RING finger protein [Arabidopsis th... 44 0.010
ref|XP_504845.1| YlPEX2 [Yarrowia lipolytica] >gi|54041949|... 44 0.010
ref|XP_519817.2| PREDICTED: peroxisomal membrane protein 3 ... 44 0.014
sp|Q06438|PEX2_CRIGR Peroxisome assembly factor 1 (PAF-1) (... 42 0.035
ref|XP_001528114.1| conserved hypothetical protein [Loddero... 42 0.042
gb|ABQ22826.1| peroxisome assembly factor 1-like protein [C... 42 0.057
ref|XP_001657838.1| hypothetical protein AaeL_AAEL006463 [A... 41 0.093
ref|XP_001220945.1| hypothetical protein CHGG_01724 [Chaeto... 41 0.10
ref|XP_342603.3| PREDICTED: similar to regulator of telomer... 39 0.38
ref|XP_001912471.1| unnamed protein product [Podospora anse... 39 0.41
gb|AAL29060.2| LD46714p [Drosophila melanogaster] 39 0.45
emb|CAF97942.1| unnamed protein product [Tetraodon nigrovir... 39 0.49
gb|AAH86436.1| Rtel1 protein [Rattus norvegicus] 39 0.50
ref|XP_964597.1| peroxisomal biogenesis factor 2 [Neurospor... 39 0.53
ref|NP_648210.1| CG7081 CG7081-PA [Drosophila melanogaster]... 38 0.73
ref|XP_368589.1| hypothetical protein MGG_00655 [Magnaporth... 38 0.78
ref|XP_001398873.1| hypothetical protein An18g04150 [Asperg... 38 0.78
ref|XP_001354095.1| GA20087-PA [Drosophila pseudoobscura] >... 37 1.6
ref|XP_001269799.1| peroxisome biosynthesis protein (Peroxi... 37 1.7
ref|XP_309872.4| AGAP010836-PA [Anopheles gambiae str. PEST... 37 2.0
ref|XP_001688187.1| AGAP011217-PA [Anopheles gambiae str. P... 37 2.1
ref|XP_001740301.1| hypothetical protein EDI_353070 [Entamo... 36 2.3
emb|CAL50334.1| vacuolar transporter chaperone 2 (IC) [Ostr... 36 2.9
ref|XP_001650927.1| peroxisomal membrane protein, putative ... 35 4.7
gb|ABH11413.1| peroxin 2 [Penicillium chrysogenum] 35 5.2
ref|XP_001781834.1| predicted protein [Physcomitrella paten... 35 6.4
gb|ACO61580.1| predicted protein [Micromonas sp. RCC299] 35 6.6
ref|YP_256916.1| hypothetical protein Saci_2341 [Sulfolobus... 35 7.4
>ref|NP_012325.1| RING-finger peroxin, peroxisomal membrane protein with a C-terminal
zinc-binding RING domain, forms translocation subcomplex
with Pex10p and Pex12p which functions in peroxisomal
matrix protein import; Pex2p [Saccharomyces cerevisiae]
sp|P32800|PEX2_YEAST Peroxisomal biogenesis factor 2 (Peroxin-2) (Peroxisomal protein
PAS5) (Protein CRT1)
gb|AAB36836.1| pas5 [Saccharomyces cerevisiae]
emb|CAA84000.1| ORF [Saccharomyces cerevisiae]
emb|CAA89508.1| PAS5 [Saccharomyces cerevisiae]
gb|EDN63181.1| peroxin [Saccharomyces cerevisiae YJM789]
Length = 271
Score = 553 bits (1426), Expect = e-156, Method: Composition-based stats.
Identities = 271/271 (100%), Positives = 271/271 (100%)
Query: 1 MSRVAQLDSIALDKELYGQFWSEFNAAFNTSEHKEEWELALNTVVFMCATRFLPHYGSSC 60
MSRVAQLDSIALDKELYGQFWSEFNAAFNTSEHKEEWELALNTVVFMCATRFLPHYGSSC
Sbjct: 1 MSRVAQLDSIALDKELYGQFWSEFNAAFNTSEHKEEWELALNTVVFMCATRFLPHYGSSC 60
Query: 61 TYGSALSGVVFQCRKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMMWLKLYKWVNLLYH 120
TYGSALSGVVFQCRKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMMWLKLYKWVNLLYH
Sbjct: 61 TYGSALSGVVFQCRKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMMWLKLYKWVNLLYH 120
Query: 121 GCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQN 180
GCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQN
Sbjct: 121 GCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQN 180
Query: 181 RQLLWNALLELFSNTLLTKRGLLTFVKKPPRSRSTTTYKTVCPRCGGFPTNPYQIACCRA 240
RQLLWNALLELFSNTLLTKRGLLTFVKKPPRSRSTTTYKTVCPRCGGFPTNPYQIACCRA
Sbjct: 181 RQLLWNALLELFSNTLLTKRGLLTFVKKPPRSRSTTTYKTVCPRCGGFPTNPYQIACCRA 240
Query: 241 NYCYVCVVKALEWSMCDACGSSGRLTASPVY 271
NYCYVCVVKALEWSMCDACGSSGRLTASPVY
Sbjct: 241 NYCYVCVVKALEWSMCDACGSSGRLTASPVY 271
>ref|XP_447524.1| hypothetical protein CAGL0I06292g [Candida glabrata CBS138]
emb|CAG60461.1| unnamed protein product [Candida glabrata CBS 138]
Length = 258
Score = 204 bits (519), Expect = 6e-51, Method: Composition-based stats.
Identities = 110/262 (41%), Positives = 164/262 (62%), Gaps = 12/262 (4%)
Query: 1 MSRVAQLDSIALDKELYGQFWSEFNAAFNTSEHKEEWELALNTVVFMCATRFLPHYGSSC 60
MSRVAQLDS+ LD+E+ W+ F F S++ EE + L +VF+C ++ + ++
Sbjct: 1 MSRVAQLDSVVLDQEVDHLIWNIFQKDFKVSKYAEECQFLLRCLVFICGSKSVDGVNTT- 59
Query: 61 TYGSALSGVVFQCRKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMMWLKLYKWVNLLYH 120
TYGS LSGV + CRKRTL+V +L Y+++K++++ F+ + + L+LY+W++ LY
Sbjct: 60 TYGSRLSGVYYLCRKRTLFVSNILIHYLYRKLSNLYFSSNNISERT--LRLYRWISTLYG 117
Query: 121 GCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQN 180
D+T FLRFL ++G +LS R + ++ + S FY ++V+AGLEYQN
Sbjct: 118 VLDLTTFLRFLLSDGNTK--YLSLTNRLLGIVTSVDMLS----PSSFYQDTVYAGLEYQN 171
Query: 181 RQLLWNALLELFSNTLLTKRGLLTFVKKPPRSRSTTTYKTVCPRCGGFPTNPYQIACCRA 240
RQLLWNALLE+F++TL+ L +K R +T CP C GFP NPY+ +CCRA
Sbjct: 172 RQLLWNALLEVFNSTLMNSNKYLWDTRK---KRDKPANETTCPECNGFPVNPYRSSCCRA 228
Query: 241 NYCYVCVVKALEWSMCDACGSS 262
NYCY+C +KAL C CG++
Sbjct: 229 NYCYICGMKALAREHCTNCGNT 250
>ref|XP_001646918.1| hypothetical protein Kpol_2000p24 [Vanderwaltozyma polyspora DSM
70294]
gb|EDO19060.1| hypothetical protein Kpol_2000p24 [Vanderwaltozyma polyspora DSM
70294]
Length = 264
Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats.
Identities = 110/273 (40%), Positives = 165/273 (60%), Gaps = 11/273 (4%)
Query: 1 MSRVAQLDSIALDKELYGQFWSEFNAAFNTSEHKEEWELALNTVVFMCATRFLPHYGSSC 60
MSRVA DS+ LD EL+ +W EF N ++ EWE LN+++F+ +T + +
Sbjct: 1 MSRVAVFDSLELDNELHDLYWREFKQNLNIRNNEHEWEFLLNSIIFLFST-YKKGNNLTT 59
Query: 61 TYGSAL-SGVVFQCRKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMMWLKLYKWVNLLY 119
TY L S +F K+TL+V+T+L Y+ KK+ H+I+N N+ + L L W N +Y
Sbjct: 60 TYALELTSNNLFNATKKTLFVITILKNYINKKLQHLIYNN---SNESL-LYLLHWFNKIY 115
Query: 120 HGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQ 179
D+ NFL+FL++ N+ F+SP++R NV TR + S S+FY N+V + L++Q
Sbjct: 116 SLLDLINFLKFLSSFN-NSHLFISPIHRLLNVPITRTNLESS---SDFYQNTVVSNLQFQ 171
Query: 180 NRQLLWNALLELFSNTLLTKRGLLTFVKKPPRSRSTT-TYKTVCPRCGGFPTNPYQIACC 238
NRQLLWN++LELF+ TLL L KP + ++ + T T+C RC FP+ PY+ CC
Sbjct: 172 NRQLLWNSILELFNMTLLNNSAWLQRKFKPMKLKNKSLTDSTICTRCDEFPSQPYRFQCC 231
Query: 239 RANYCYVCVVKALEWSMCDACGSSGRLTASPVY 271
++ YCY+C +K L+ S+C CG L A P+Y
Sbjct: 232 QSLYCYICTIKTLDLSICQNCGKDNNLKAVPLY 264
>ref|NP_982853.1| ABL094Wp [Ashbya gossypii ATCC 10895]
gb|AAS50677.1| ABL094Wp [Ashbya gossypii ATCC 10895]
Length = 257
Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats.
Identities = 107/271 (39%), Positives = 154/271 (56%), Gaps = 21/271 (7%)
Query: 1 MSRVAQLDSIALDKELYGQFWSEFNAAFNTSEHKEEWELALNTVVFMCATRFLPHYGSSC 60
MSRVAQLDS+ALD EL+ WSEF + F ++ +EW+L L+T+++ +T
Sbjct: 1 MSRVAQLDSLALDSELHQGIWSEFQSQFKPVKYIDEWQLLLHTLIYHFSTH--TSVAGVS 58
Query: 61 TYGSALSGVVFQCRKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMMWLKLYKWVNLLYH 120
TYGS LSGV ++ K TL++VTVL Y+ KK++ ++ + + KLY+ YH
Sbjct: 59 TYGSQLSGVTYRTSKSTLFLVTVLVRYIHKKLSTLLVR------REGYAKLYRVAAKWYH 112
Query: 121 GCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQN 180
D+ NFL FLA FLSP++R F + R + D FY ++V++GLE+QN
Sbjct: 113 CYDLANFLSFLARP-----LFLSPIHRLFGIRCVRALDD-----PNFYLSTVYSGLEFQN 162
Query: 181 RQLLWNALLELFSNTLLTKRGLLTFVKKPPRSRSTTTYKTVCPRCGGFPTNPYQIACCRA 240
RQL+WNALLEL + F K+ + T C +C P NPY +CC A
Sbjct: 163 RQLMWNALLELLNANFFNSH---FFSKRSLVKNARPTGPEECAKCRDVPNNPYSTSCCGA 219
Query: 241 NYCYVCVVKALEWSMCDACGSSGRLTASPVY 271
YCYVCV+ +L+ C+ CG+ G +A P+Y
Sbjct: 220 TYCYVCVLISLDIKFCNNCGNRGDFSAIPLY 250
>ref|XP_453090.1| unnamed protein product [Kluyveromyces lactis]
emb|CAH00186.1| unnamed protein product [Kluyveromyces lactis NRRL Y-1140]
Length = 244
Score = 87.4 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 76/281 (27%), Positives = 116/281 (41%), Gaps = 64/281 (22%)
Query: 1 MSRVAQLDSIALDKELYGQFWSEFNAAFNTSEHKEEWELALNTVVFMCATRFLPHYGSSC 60
MSRVAQLD ++LD +L S+ ++ + +VF+ +R H GS
Sbjct: 1 MSRVAQLDGVSLDLQLTRALQSDLGFPCP--------QIVVEILVFLLGSRRW-HQGSVA 51
Query: 61 TYGSALSGVVFQCRKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMMWLKLYKWVNLLYH 120
TYGS L+GV +QC + L+ VTV+ ++ L ++ NL+Y
Sbjct: 52 TYGSVLTGVGYQCSRWRLFAVTVVLRHL--------------------LHRFERTNLVYE 91
Query: 121 GCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQN 180
D+ + L+FL + G + L RL R + F + +G
Sbjct: 92 LLDLIHLLQFLTS-GTGGPSLLH-----------RLFRVPAVFQPGFSYSDTTSGSSASE 139
Query: 181 RQLLWNALLELFSNTLLTKRGLLTF--------------------VKKPPRSRSTTTYKT 220
Q+LWNA +E+ + L K G ++ V P S T
Sbjct: 140 VQMLWNASIEMIAGLSLFKNGFVSVTSTNAAAVAAAKAIAGGSSSVGAPGEKFSQKN--T 197
Query: 221 VCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSMCDACGS 261
+CP CG TN + I CC YCY C ++ +E S C C +
Sbjct: 198 LCPVCGEVATNAFTITCCNTRYCYTCALE-VEQSHCLVCNT 237
>emb|CAO02572.1| peroxisomal membrane protein [Kluyveromyces waltii]
emb|CAO02577.1| peroxisomal membrane protein [Kluyveromyces waltii]
Length = 222
Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 68/237 (28%), Positives = 114/237 (48%), Gaps = 21/237 (8%)
Query: 4 VAQLDSIALDKELYGQFWSEFNAAFNTSEHKEEWELALNTVVFMCATRFLPHYGSSCTYG 63
V Q+D LD +L Q WS + S H E L+ + F +T ++ TYG
Sbjct: 3 VNQVDGNKLDIDLDDQLWSLLSTKLKPSSHTSEIRFLLSALTFYLSTT--SDNINTLTYG 60
Query: 64 SALSGVVFQCRKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMMWLKLYKWVNLLYHGCD 123
S+L+G ++ KRTL++ VL+ ++ +K ++N + +LK+Y ++ +
Sbjct: 61 SSLTGTCYKTTKRTLFIANVLSPFLLQKFQTYVYN-----SGASFLKVYNLLHKIATVWS 115
Query: 124 VTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQNRQL 183
+T FL+ ++ P FLS L++ + + S+FY NSV A +E+QN QL
Sbjct: 116 LTTFLKLISGNNP---PFLSLLHKLLRIQAIPYTN------SDFYQNSVNASIEFQNTQL 166
Query: 184 LWNALLELFSNTLLTKRGLLTFVKKPPRSRSTTTYKTV----CPRCGGFPTNPYQIA 236
L L NT + LL F+ K ++ +T+ CP+C PT PY+ +
Sbjct: 167 L-YNALLQLLNTHIIGSSLLKFLTKRQSGQTKHQKQTIQIRNCPQCNEIPTIPYKTS 222
>ref|XP_001387892.2| peroxisome assembly protein (Peroxin-2) [Pichia stipitis CBS 6054]
gb|EAZ63869.2| peroxisome assembly protein (Peroxin-2) [Pichia stipitis CBS 6054]
Length = 399
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 77/309 (24%), Positives = 121/309 (39%), Gaps = 82/309 (26%)
Query: 3 RVAQLDSIALDKELYG----QFWSEF----NAAFNTSEHKEEWELALNTVVFMCATRFLP 54
RV+QLD+ LD EL Q S F N+ F+ S++ E W L LN +VF L
Sbjct: 10 RVSQLDAHILDSELLSLLKEQLASIFQLHTNSRFSYSQNPELWSLLLNVLVFK-----LT 64
Query: 55 HYGSSCTYGSALSGV---------VFQCRKRTLYVVTVLAGYVWKKITHIIFN------- 98
+ S +YG AL + + KR+L + ++ Y++ K+ +++
Sbjct: 65 VWKSGSSYGLALQNLKLTDSKTNKLIGVSKRSLLLALLVGDYLYSKLQSYLYSLDDNDRS 124
Query: 99 GPHCGNQMMWLKLYKWVNLL---------YHGCDVTNFLRFLAAEGPNARAFLSPLYRAF 149
P+ +K Y + N + ++ NF+ FL N + + S ++RA
Sbjct: 125 EPYSFALFNRVKSYVYRNRTALISSVDNGFKTLNLINFMLFLV----NGK-YPSLIHRAL 179
Query: 150 NVHSTRLIRDGSAIASEFYS-NSVFAGLEYQNRQLLWNALLELFSNTLLT---------K 199
+ T IAS+ N E+QNRQL+WN + E L
Sbjct: 180 RITMT-------PIASDLLRFNGSNVNFEFQNRQLVWNVMTEFLVFLLPLLQLNKLRKMA 232
Query: 200 RGLLTFVKKPPRSRSTTTYKTV----CPRC-----------------GGFPTNPYQIACC 238
R L+ K ++ + Y + C C G TNPY + C
Sbjct: 233 RQALSTSKSQEKTTIISPYTNLPLSQCAICHDNNNQAAASGMKSFTTSGNITNPY-VTNC 291
Query: 239 RANYCYVCV 247
YCYVC+
Sbjct: 292 GHIYCYVCI 300
>ref|XP_457905.1| hypothetical protein DEHA0C05720g [Debaryomyces hansenii CBS767]
emb|CAG85956.1| unnamed protein product [Debaryomyces hansenii CBS767]
Length = 445
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 78/317 (24%), Positives = 120/317 (37%), Gaps = 90/317 (28%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAF---NTS-----EHKEEWELALNTVVFMCATRFLP 54
RV+QLD+ LD EL + + F +TS +H E W L LN +VF L
Sbjct: 10 RVSQLDANILDSELISLLKEQLTSIFQLHSTSWWTYDQHPELWSLLLNLMVFR-----LT 64
Query: 55 HYGSSCTYGSALS---------GVVFQCRKRTLYVVTVLAGYVWKKITHIIFN-----GP 100
+ S +YG+ L G + KRTL ++ Y + K+ +++
Sbjct: 65 VWRSGSSYGALLQNLKLTDFKKGKLIGYSKRTLLCAVLVGDYFYSKLQSYLYSIDESEAS 124
Query: 101 HCGNQMMWL------------KLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRA 148
+ L K+ +N + ++ NF FL N R + S +R
Sbjct: 125 RNASNFKLLNSIKSFFITHKTKILLGLNDCFKLLNLVNFTLFLV----NGR-YPSISHRL 179
Query: 149 FNVHSTRLIRDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFSNTL----------LT 198
F + T ++ D +F N V E+QNRQL+WN + E L +T
Sbjct: 180 FGISLTPIVTD----LLKFNGNKV--NFEFQNRQLVWNVMTEFLVFILPLMQLGKLKRMT 233
Query: 199 KRGLLTFVKKPPRSRST-----TTYKTV----CPRCGG-------------------FPT 230
K+ +L+ KK R + T Y + C C T
Sbjct: 234 KK-ILSPYKKGQRHETGDIPIFTPYTNLPVSQCAICHNNNDIAATSSNKNSSISSSCMVT 292
Query: 231 NPYQIACCRANYCYVCV 247
NPY + C YCY+C+
Sbjct: 293 NPY-VTNCGHIYCYICI 308
>ref|NP_001008454.1| peroxin 2 [Gallus gallus]
emb|CAG31179.1| hypothetical protein [Gallus gallus]
Length = 304
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 64/290 (22%), Positives = 114/290 (39%), Gaps = 51/290 (17%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F + F+ + E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTSCFHGFKPGVLAHIEPEVKAFLWLLLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G A+ + ++ ++ Y++ + G ++ + +F+ +
Sbjct: 75 TVGQAILNIQYKNNLSQTEKYQPLSKHQKLWYLIFTVGGRWLEERCYDLFSNRQLQSVS- 133
Query: 108 WLKLYKWVNL---LYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIA 164
K+ ++N L C + NFL FL F + R++ S
Sbjct: 134 --KIKHYINFGAGLLKLCGLVNFLIFLQKG-------------TFATLTERILGIRSVFC 178
Query: 165 SEFYSNSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRGL--------LTFVKKPPRSRS 214
V G EY NR+LLW+ E ++ L+ + L P ++
Sbjct: 179 KPQSVRQV--GFEYMNRELLWHGFAEFLIYLLPLINVQKLKLKICSWCFPIANLPNSDKT 236
Query: 215 TTTYKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
T+ VC CG +PT P+ I C +CY C+ + M C CGS
Sbjct: 237 LATHYKVCSLCGEWPTMPHTIGCSHV-FCYYCIKSNYLFDMYFTCPKCGS 285
>ref|XP_001377812.1| PREDICTED: similar to Peroxisome assembly factor 1 (PAF-1)
(Peroxin-2) (Peroxisomal membrane protein 3) (35 kDa
peroxisomal membrane protein) (RING finger protein 72)
[Monodelphis domestica]
Length = 305
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 64/287 (22%), Positives = 115/287 (40%), Gaps = 45/287 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTHCFHGFKPGLLARLEPEVKAFLWLFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQCR-------------KRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++ ++ Y + + G ++ + +F H +
Sbjct: 75 TVGQSIMNIQYKNNYSQTQKYQPLSKNQKLWYAICTVGGRWLEERCYDLFRNHHLAS--- 131
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ K+ + NL+ +++ + FL FL F + RL+ S
Sbjct: 132 FYKIKQCTNLIVGLLKLSSLVNFLI--------FLQK--GKFATLTERLLGIRSVFCKP- 180
Query: 168 YSNSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRGL--------LTFVKKPPRSRSTTT 217
N G EY NR+LLW+ E +F L+ + L + F P + T
Sbjct: 181 -QNIREVGFEYMNRELLWHGFAEFLIFLLPLINIQKLKAKLSSWCIPFTGVPNSDVTLAT 239
Query: 218 YKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
+ C CG +PT P+ I C +CY CV + + M C CG+
Sbjct: 240 HGKECSLCGEWPTMPHTIGCVHV-FCYYCVKSSYLFDMYFTCPKCGT 285
>ref|XP_714968.1| peroxisomal import RING finger complex component Pex2 [Candida
albicans SC5314]
ref|XP_714905.1| peroxisomal import RING finger complex component Pex2 [Candida
albicans SC5314]
gb|EAK95865.1| likely peroxisomal import RING finger complex component Pex2
[Candida albicans SC5314]
gb|EAK95929.1| likely peroxisomal import RING finger complex component Pex2
[Candida albicans SC5314]
Length = 420
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 81/302 (26%), Positives = 121/302 (40%), Gaps = 65/302 (21%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNT--------SEHKEEWELALNTVVFMCATRFLP 54
RV+QLD+ LD EL+ + ++ F S+H E + L LN ++F L
Sbjct: 10 RVSQLDAGILDSELFSLLKEQLSSIFQLHSTSRYSFSQHPELYSLLLNLLIFR-----LT 64
Query: 55 HYGSSCTYGSAL---------SGVVFQCRKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQ 105
+ S +YGS+L SG + ++ L ++ GY++KK+ +F Q
Sbjct: 65 VWKSGSSYGSSLQNLKLTDSRSGKIIGSSRKALLGAVIIGGYLYKKLESYLFFLDESSTQ 124
Query: 106 MMWLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIAS 165
L K N L + T+ L L A + +S+ + R I +
Sbjct: 125 NSHSTLDKLKNYLL--INRTSILSGLENSLKIANLVNFTFFLVNGQYSSLVNRILGIIET 182
Query: 166 EFYS-----NSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRGLLTFVKK-PPRSRST-- 215
S N E+QNRQL+WN + E +F LL R L +K RS+++
Sbjct: 183 PISSDLLKFNGSNVNYEFQNRQLVWNVMTEFLVFILPLLQLRKLGRMTRKLLGRSKNSLD 242
Query: 216 ---------TTYKTV----CPRC----------GG--FP-----TNPYQIACCRANYCYV 245
T+Y + C C GG FP TNPY I C YCYV
Sbjct: 243 VQSGNVPTLTSYTNLPVSECAICHDNNNQASQTGGRTFPSAGPVTNPY-ITNCGHVYCYV 301
Query: 246 CV 247
C+
Sbjct: 302 CI 303
>ref|NP_001093818.1| peroxin 2 [Bos taurus]
gb|AAI48002.1| LOC512677 protein [Bos taurus]
Length = 305
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 66/291 (22%), Positives = 113/291 (38%), Gaps = 53/291 (18%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKAFLWLFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQ------------CRKRTL-YVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + +Q R + L Y V + G ++ + +F H +
Sbjct: 75 TVGQSVLNIQYQNDLSPNLSYQPPSRNQKLWYAVCTIGGKWLEERCYDLFRNRHIASFRK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHST----RLIRDGSAI 163
+ V L + NFL FL F + R +HS + +R+
Sbjct: 135 AKQCMNLVVGLLKLGGLINFLIFL-----QRGKFATLTERLLGIHSVFHKPQSVRE---- 185
Query: 164 ASEFYSNSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRGL--------LTFVKKPPRSR 213
G EY NR+LLW+ E +F L+ + L + P +
Sbjct: 186 ----------VGFEYMNRELLWHGFAEFLIFLLPLINVQKLRAKLSSWCVPLTGAPGSNS 235
Query: 214 STTTYKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
+ T C CG +PT P+ + C +CY CV + + M C CG+
Sbjct: 236 TLATSGRQCSLCGEWPTMPHTVGCEHV-FCYYCVKSSFLFDMSFTCPKCGT 285
>ref|XP_001490672.1| PREDICTED: similar to Peroxisome assembly factor 1 (PAF-1)
(Peroxin-2) (Peroxisomal membrane protein 3) (35 kDa
peroxisomal membrane protein) (RING finger protein 72)
[Equus caballus]
Length = 305
Score = 51.6 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 65/287 (22%), Positives = 111/287 (38%), Gaps = 45/287 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKAFLWLFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQ------------CRKRTL-YVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++ R + L Y V + G ++ + +F PH +
Sbjct: 75 TVGQSVLNIQYKNDFSPNPRYQPPSRNQKLWYAVCTIGGKWLEERCYDLFRNPHLASFRK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ +V + + NFL FL F + RL+ S
Sbjct: 135 AKQCVNFVVGILKLGGLINFLIFLQRG-------------KFATLTERLLGIRSVFCKP- 180
Query: 168 YSNSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRGL--------LTFVKKPPRSRSTTT 217
N G EY NR++LW+ E +F L+ + L + P + T
Sbjct: 181 -QNIREVGFEYMNREILWHGFAEFLIFLLPLINIQKLKAKLSSWCIPLTGAPNGDSTLAT 239
Query: 218 YKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
C CG +PT P+ I C +CY CV + + M C CG+
Sbjct: 240 SGRQCSLCGEWPTMPHTIGC-EHIFCYYCVKSSFLYDMYFTCPKCGT 285
>gb|AAT97412.1| peroxin 2 [Pichia angusta]
Length = 366
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 76/336 (22%), Positives = 116/336 (34%), Gaps = 102/336 (30%)
Query: 2 SRVAQLDSIALDKELYGQFWSEFNAAFNT-----------SEHKEEWELALNTVVFMCAT 50
+RV Q+D+ LD E++ + N A + S + +E LAL VF
Sbjct: 9 NRVLQVDAKLLDNEIFDILAKQLNEAISNPKLPRFFQLLNSRYSDELRLALELCVFKVTI 68
Query: 51 RFLPHYGSSCTYGSALSGVVFQ----CRKRTLYVVTVLAGYV------------------ 88
+ S +YG L +V R+ T ++ L
Sbjct: 69 -----WNKSSSYGLLLQNLVMSDGGDRRRNTKSELSRLKKTALLSYLILSYLYKKLESHL 123
Query: 89 -------------WKKITHIIFNGPHCGNQMMWLKLYKWVNLLYHGCDVTNFLRFLA-AE 134
W + H+I Q + L KW Y G + NFL FL +
Sbjct: 124 YSLDADDEEDRTKWHQYVHMIM----ARLQRVLPTLQKW----YAGLSLANFLAFLIHGQ 175
Query: 135 GPNARAFLSPLYRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQNRQLLWNALLE---- 190
PN + R + L+ + F SN E+Q+RQL+WN L E
Sbjct: 176 YPNL------VNRVLRIRYKPLV----STQVSFASNPETISYEFQDRQLVWNTLTEFLVF 225
Query: 191 ---LFSNTLLTKRGLLTFVKKPPRSRSTTTYKTVCPRCGG-------------------F 228
+ S + L+K + + T Y+ + RC
Sbjct: 226 IMPILSMSKLSKSVVRLLQTDQKQDEKETIYRFLPERCCAICYQNTTRAGVADASIDEHL 285
Query: 229 PTNPYQIACCRANYCYVCVVKALE----WSMCDACG 260
TNP++ +C YCYVC++ LE W +C CG
Sbjct: 286 ITNPFETSCGHV-YCYVCLMAKLEDGDPW-LCLRCG 319
>ref|NP_001055075.1| Os05g0275700 [Oryza sativa (japonica cultivar-group)]
gb|AAT85132.1| putative peroxisome assembly protein 2 [Oryza sativa (japonica
cultivar-group)]
dbj|BAF16989.1| Os05g0275700 [Oryza sativa (japonica cultivar-group)]
Length = 342
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 176 LEYQNRQLLWNALLELFS------NTLLTKRGLLTFVKKPPRSRSTTTYKTVCPRCGGFP 229
EY NRQL+WN E+ N+ K+ LL F K +S S++ + CP C P
Sbjct: 239 FEYMNRQLVWNEFSEMLLLLLPLLNSSSVKKFLLPFSKD--KSASSSGDEADCPICRSSP 296
Query: 230 TNPYQIACCRANYCYVCV 247
+ P++ C+ YCY C+
Sbjct: 297 SIPFEALPCQHRYCYYCL 314
>sp|P24392|PEX2_RAT Peroxisome assembly factor 1 (PAF-1) (Peroxin-2) (Peroxisomal
membrane protein 3)
emb|CAA41054.1| peroxisome assembly factor-1 [Rattus rattus]
dbj|BAA06306.1| peroxisome assembly factor-1 [Rattus norvegicus]
gb|AAH63169.1| Peroxisomal membrane protein 3 [Rattus norvegicus]
gb|EDM01038.1| peroxisomal membrane protein 3, isoform CRA_a [Rattus norvegicus]
gb|EDM01039.1| peroxisomal membrane protein 3, isoform CRA_a [Rattus norvegicus]
gb|EDM01040.1| peroxisomal membrane protein 3, isoform CRA_a [Rattus norvegicus]
prf||1706355A peroxisome assembly factor 1
Length = 305
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 65/291 (22%), Positives = 117/291 (40%), Gaps = 53/291 (18%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKAFLWLFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++ ++ LY V + G ++ + +F H +
Sbjct: 75 TVGQSVLNIQYKNDSSPNPVYQPPSKNQKLLYAVCTIGGRWLEERCYDLFRNRHLASFGK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHST----RLIRDGSAI 163
+ +V L ++ NFL FL F + R +HS + +R+
Sbjct: 135 AKQCMNFVVGLLKLGELMNFLIFL-----QKGKFATLTERLLGIHSVFCKPQSMRE---- 185
Query: 164 ASEFYSNSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRGLLTFVKK--PPRSRSTTTYK 219
G EY NR+LLW+ E +F L+ + L + P + + +
Sbjct: 186 ----------VGFEYMNRELLWHGFAEFLVFLLPLINIQKLKAKLSSWCIPLTSTAGSDS 235
Query: 220 TV------CPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
T+ C CG +PT P+ I C +CY CV + + M C CG+
Sbjct: 236 TLGSSGKECALCGEWPTMPHTIGCEHV-FCYYCVKSSFLFDMYFTCPKCGT 285
>ref|NP_058930.1| peroxin 2 [Rattus norvegicus]
dbj|BAA06307.1| peroxisome assembly factor-1 [Rattus norvegicus]
Length = 305
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 65/291 (22%), Positives = 117/291 (40%), Gaps = 53/291 (18%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKAFLWLFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++ ++ LY V + G ++ + +F H +
Sbjct: 75 TVGQSVLNIQYKNDSSPNPVYQPPSKNQKLLYAVCTIGGRWLEERCYDLFPNRHLASFGK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHST----RLIRDGSAI 163
+ +V L ++ NFL FL F + R +HS + +R+
Sbjct: 135 AKQCMNFVVGLLKLGELMNFLIFL-----QKGKFATLTERLLGIHSVFCKPQSMRE---- 185
Query: 164 ASEFYSNSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRGLLTFVKK--PPRSRSTTTYK 219
G EY NR+LLW+ E +F L+ + L + P + + +
Sbjct: 186 ----------VGFEYMNRELLWHGFAEFLVFLLPLINIQKLKAKLSSWCIPLTSTAGSDS 235
Query: 220 TV------CPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
T+ C CG +PT P+ I C +CY CV + + M C CG+
Sbjct: 236 TLGSSGKECALCGEWPTMPHTIGCEHV-FCYYCVKSSFLFDMYFTCPKCGT 285
>sp|Q01964|PEX2_PICPA Peroxisomal biogenesis factor 2 (Peroxin-2) (Peroxisomal protein
PER6)
emb|CAA65646.1| peroxin-2 [Pichia pastoris]
Length = 461
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 77/331 (23%), Positives = 118/331 (35%), Gaps = 95/331 (28%)
Query: 2 SRVAQLDSIALDKELYGQFWSEFNAAFNT-----------SEHKEEWELALNTVVFMCAT 50
+RV QLD+ LD E+ + + + AFN+ S + E +L L ++F
Sbjct: 13 NRVLQLDAKLLDNEISDMLYRQLSGAFNSNRLPSWLGRIHSNYASELKLLLELLIFKVTV 72
Query: 51 RFLPHYGSSCTYGSALSGVV------------------FQCRKRTLYVVTVLAGYVWKKI 92
+ +YG L +V + K+ L + +VL GY KKI
Sbjct: 73 -----WNKHSSYGLTLQNLVMYDGGVHNKKFRSKQQSELRVTKKILLLSSVLLGYFVKKI 127
Query: 93 THIIF---------NGPHCGN----QMMWLKLYK-WVNLLYHGCDV---TNFLRFLAAEG 135
++ +G ++ +KL K ++ L V NF+ FL +
Sbjct: 128 QSYVYSFEDYDLETDGEDLSTLERIRLKTIKLLKSQISTLEKAHSVLSLVNFVTFLVSG- 186
Query: 136 PNARAFLSPLYRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFSNT 195
+F R N+ L+ A F SN E+QNRQL+WN L E
Sbjct: 187 ----SFPDLTTRILNIRFKPLVTTQVA----FASNPETISYEFQNRQLVWNTLTEFIVFI 238
Query: 196 L-------LTKRGLLTFVKKPPRSRSTTTY---------KTVCPRC-------------- 225
L TK + + P+S T + VC C
Sbjct: 239 LPALSVPKFTKSLVSSITGTSPKSSQVTDEDLKVFSSLPERVCAICFQNSQNSDSGAQND 298
Query: 226 ----GGFPTNPYQIACCRANYCYVCVVKALE 252
TNPY+ C YCYVC++ L+
Sbjct: 299 ISLNDTLVTNPYETTCGHI-YCYVCILSKLQ 328
>ref|XP_544136.2| PREDICTED: similar to Peroxisome assembly factor-1 (PAF-1)
(Peroxin-2) (Peroxisomal membrane protein 3) (35 kDa
peroxisomal membrane protein) (RING finger protein 72)
[Canis familiaris]
Length = 305
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 63/287 (21%), Positives = 113/287 (39%), Gaps = 45/287 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L W++F F+ + +E + ++++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWAQFTQCFHGFKPGLLAHFEPEVKALLWLFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++ ++ Y V + G ++ + +F H +
Sbjct: 75 TVGQSVLNIQYKNDFSPKLRYQPPSKNQKLWYAVCTIGGTWLEERCYDLFRNRHLAS--- 131
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ K + VN++ + + FL FL F + RL+ S
Sbjct: 132 FGKARQCVNIMVGLLKLGGLINFLI--------FLQ--RGKFATLTERLLGIRSVFCKP- 180
Query: 168 YSNSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRGL--------LTFVKKPPRSRSTTT 217
N G EY NR+LLW+ E +F L+ + L + P + T
Sbjct: 181 -QNVREVGFEYMNRELLWHGFAEFLIFLLPLINIQKLKAKLSSWCIPLTGAPTSDNTLAT 239
Query: 218 YKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
C CG +PT P+ I C +CY CV + + M C CG+
Sbjct: 240 SGKQCSLCGEWPTMPHTIGC-EHIFCYYCVKSSFLFDMYFTCPKCGT 285
>dbj|BAE27238.1| unnamed protein product [Mus musculus]
Length = 305
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 63/287 (21%), Positives = 110/287 (38%), Gaps = 45/287 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ LDK L WS+F F+ + +E + +++ RF Y +
Sbjct: 16 RISQLDALELDKALEQLVWSQFTQCFHGFKPGLLARFEPEVKAFLWLFLWRFTI-YSKNA 74
Query: 61 TYGSALSGV----------VFQCRKRT---LYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++Q +T Y V + G ++ + +F H +
Sbjct: 75 TVGQSVLNIQYKNDSSLNLIYQPPSKTQKLWYAVCTIGGKWLEERCYDLFRNRHLASFGK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ ++ L ++ NFL FL F + R +HS
Sbjct: 135 AKQFMNFLVGLLKLGELINFLIFL-----QKGKFATLTERLLGIHSVFCKP--------- 180
Query: 168 YSNSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRGL--------LTFVKKPPRSRSTTT 217
N G EY NR+LLW+ E +F L+ + L + + +
Sbjct: 181 -QNMREVGFEYMNRELLWHGFAEFLIFLLPLINIQKLKAKLSSWCIPLTGAAGHDSTLGS 239
Query: 218 YKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
C CG +PT P+ I C +CY CV + + + C CG+
Sbjct: 240 SGKECALCGEWPTMPHTIGCEHV-FCYYCVKSSFLFDIYFTCPKCGT 285
>sp|P55098|PEX2_MOUSE Peroxisome assembly factor 1 (PAF-1) (Peroxin-2) (Peroxisomal
membrane protein 3)
gb|AAA21742.1| peroxisome assembly factor-1
Length = 305
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 67/291 (23%), Positives = 112/291 (38%), Gaps = 53/291 (18%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKAFLWLFLWRFTI-YSKNA 74
Query: 61 TYGSALSGV----------VFQC---RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + V+Q ++ LY V + G ++ + +F H +
Sbjct: 75 TVGQSVLNIQHKNDSSPNPVYQPPSKNQKLLYAVCTIGGRWLEERCYDLFRNRHLASFGK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ +V L ++ NFL FL F + R +HS
Sbjct: 135 AKQCMNFVVGLLKLGELMNFLIFL-----QKGKFATLTERLLGIHSVFCKP--------- 180
Query: 168 YSNSVFAGLEYQNRQLLWNALLELFSNTLLTKRGLLTFVKKPPRSRSTTTYKT------- 220
N G EY NR+LLW+ F+ L+ L+ K + S T T
Sbjct: 181 -QNMREVGFEYMNRELLWHG----FAEFLIFLLPLINIQKLKAKLSSWCTLCTGAAGHDS 235
Query: 221 -------VCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
C CG +PT P+ I C +CY CV + + + C CG+
Sbjct: 236 TLGSSGKECALCGEWPTMPHTIGCEHV-FCYYCVKSSFLFDIYFTCPKCGT 285
>emb|CAO45868.1| unnamed protein product [Vitis vinifera]
Length = 346
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 176 LEYQNRQLLWNALLELFS------NTLLTKRGLLTFVKKPPRSRSTTTYKTVCPRCGGFP 229
EY NRQL+WN E+ N+ + L F K +S S+ +T CP C P
Sbjct: 235 FEYMNRQLVWNEFSEMLLLLLPLLNSSSIRNFLRPFSKN--KSSSSEGDETACPICQASP 292
Query: 230 TNPYQIACCRANYCYVCV 247
T P+ C YCY C+
Sbjct: 293 TIPFLALPCEHRYCYYCL 310
>ref|XP_001483143.1| hypothetical protein PGUG_05098 [Pichia guilliermondii ATCC 6260]
gb|EDK41000.1| hypothetical protein PGUG_05098 [Pichia guilliermondii ATCC 6260]
Length = 402
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 69/310 (22%), Positives = 113/310 (36%), Gaps = 76/310 (24%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNA------AFNTSEHKEE-WELALNTVVFMCATRFLPH 55
RV+QLD+ LD EL + ++ + T E + E W L LN VVF L
Sbjct: 10 RVSQLDADILDSELVSLLKQQLSSISHLHRGWWTYELQPELWSLLLNLVVFR-----LTV 64
Query: 56 YGSSCTYGSAL---------SGVVFQCRKRTLYVVTVLAGYVWKKITHIIFN---GPHCG 103
+ +YG L +G + KRT + ++ Y++ K +++
Sbjct: 65 WKKGTSYGLGLQNLQLSNFKNGKIIGYSKRTALLAVIIGDYLFTKFQSYLYSVDEADVAD 124
Query: 104 NQMMWLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAF---------LSPLYRAFNVHST 154
+ L+ V L +TN + L + + R +S Y +H
Sbjct: 125 AEKSSFALFGTVKRLI----LTNRTKILTSVSSSLRVLNLVNFTLFLISGRYSTL-IHRV 179
Query: 155 RLIRDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFSNTL----------LTKRGLLT 204
I ++ N E+QNRQL+WN + E L ++ + LL
Sbjct: 180 LGISLTPVVSDLLKFNGSNVNFEFQNRQLVWNTMTEFLVFILPLLQLKKLRRMSSKMLLP 239
Query: 205 FVKKPPRSRSTTTYKTV--------CPRC------------------GGFP-TNPYQIAC 237
+ KK +S+ T+ + C C FP TNP+ +
Sbjct: 240 YRKKAKKSQDEETFSSAYSNLPISQCAICHNNSEKRARSLGKTPSSLSSFPITNPH-VTN 298
Query: 238 CRANYCYVCV 247
C YCY+C+
Sbjct: 299 CGHIYCYICI 308
>gb|ABZ92521.1| peroxisomal membrane protein 3, 35kDa (Zellweger syndrome)
[synthetic construct]
Length = 305
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 63/291 (21%), Positives = 111/291 (38%), Gaps = 53/291 (18%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKACLWVFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++ ++ Y V + G ++ + +F H +
Sbjct: 75 TVGQSVLNIKYKNDFSPNLRYQPPSKNQKIWYAVCTIGGRWLEERCYDLFRNHHLASFGK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHST----RLIRDGSAI 163
+ +V L + NFL FL F + R +HS + IR+
Sbjct: 135 VKQCVNFVIGLLKLGGLINFLIFL-----QRGKFATLTERLLGIHSVFCKPQNIRE---- 185
Query: 164 ASEFYSNSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRGL--------LTFVKKPPRSR 213
G EY NR+LLW+ E +F L+ + L + P
Sbjct: 186 ----------VGFEYMNRELLWHGFAEFLIFLLPLINVQKLKAKLSSWCIPLTGAPNSDN 235
Query: 214 STTTYKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
+ T C CG +PT P+ I C +CY C + + + C CG+
Sbjct: 236 TLATSGKECALCGEWPTMPHTIG-CEHIFCYFCAKSSFLFDVYFTCPKCGT 285
>ref|NP_000309.1| peroxin 2 [Homo sapiens]
ref|NP_001073336.1| peroxin 2 [Homo sapiens]
sp|P28328|PEX2_HUMAN Peroxisome assembly factor 1 (PAF-1) (Peroxin-2) (Peroxisomal
membrane protein 3) (35 kDa peroxisomal membrane
protein) (RING finger protein 72)
gb|AAF97687.1|AF133826_1 35 kDa peroxisomal membrane protein [Homo sapiens]
gb|AAC12785.1| peroxisome assembly factor-1 [Homo sapiens]
gb|AAA60141.1| peroxisomal membrane protein
gb|AAH05375.1| Peroxisomal membrane protein 3, 35kDa (Zellweger syndrome) [Homo
sapiens]
gb|AAH93043.1| Peroxisomal membrane protein 3, 35kDa (Zellweger syndrome) [Homo
sapiens]
Length = 305
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 63/291 (21%), Positives = 111/291 (38%), Gaps = 53/291 (18%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKACLWVFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++ ++ Y V + G ++ + +F H +
Sbjct: 75 TVGQSVLNIKYKNDFSPNLRYQPPSKNQKIWYAVCTIGGRWLEERCYDLFRNHHLASFGK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHST----RLIRDGSAI 163
+ +V L + NFL FL F + R +HS + IR+
Sbjct: 135 VKQCVNFVIGLLKLGGLINFLIFL-----QRGKFATLTERLLGIHSVFCKPQNIRE---- 185
Query: 164 ASEFYSNSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRGL--------LTFVKKPPRSR 213
G EY NR+LLW+ E +F L+ + L + P
Sbjct: 186 ----------VGFEYMNRELLWHGFAEFLIFLLPLINVQKLKAKLSSWCIPLTGAPNSDN 235
Query: 214 STTTYKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
+ T C CG +PT P+ I C +CY C + + + C CG+
Sbjct: 236 TLATSGKECALCGEWPTMPHTIG-CEHIFCYFCAKSSFLFDVYFTCPKCGT 285
>gb|EAW87052.1| peroxisomal membrane protein 3, 35kDa (Zellweger syndrome) [Homo
sapiens]
Length = 305
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 62/287 (21%), Positives = 108/287 (37%), Gaps = 45/287 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKACLWVFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++ ++ Y V + G ++ + +F H +
Sbjct: 75 TVGQSVLNIKYKNDFSPNLRYQPPSKNQKIWYAVCTIGGRWLEERCYDLFRNHHLASFGK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ +V L + NFL FL F + R +HS
Sbjct: 135 VKQCVNFVIGLLKLGGLINFLIFL-----QRGKFATLTERLLGIHSVFCKP--------- 180
Query: 168 YSNSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRGL--------LTFVKKPPRSRSTTT 217
N G EY NR+LLW+ E +F L+ + L + P + T
Sbjct: 181 -QNICEVGFEYMNRELLWHGFAEFLIFLLPLINVQKLKAKLSSWCIPLTGAPNSDNTLAT 239
Query: 218 YKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
C CG +PT P+ I C +CY C + + + C CG+
Sbjct: 240 SGKECALCGEWPTMPHTIG-CEHIFCYFCAKSSFLFDVYFTCPKCGT 285
>gb|AAC49423.1| Pay5p
Length = 380
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 77/316 (24%), Positives = 111/316 (35%), Gaps = 91/316 (28%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNT--SEHKEEWE----LALNTVVFMCATRFLPHY 56
RV QLD+ LD EL ++ F E ++++E LAL ++F L +
Sbjct: 18 RVHQLDASLLDAELVDLLKNQLFKGFTNFHPEFRDKYESELVLALKLILFK-----LTVW 72
Query: 57 GSSCTYGSALSGVVF--------------QCRKRTLYVVTVLAGYVWKKITHIIF----- 97
+ TYG L + F +K ++ V GY+W KI +
Sbjct: 73 DHAITYGGKLQNLKFIDSRHSSKLQIQPSVIQKLGYGILVVGGGYLWSKIEGYLLARSED 132
Query: 98 ---------NGPHCGNQMMWLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRA 148
G LK+ + +LLY + NF+ FL Y
Sbjct: 133 DVATDGTSVRGASAARGA--LKVANFASLLYSAATLGNFVAFL--------------YTG 176
Query: 149 FNVHSTRLIRDGSAIASEFYSNSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRGLLTFV 206
+ RL+R + S V E+QNRQL+WNA E +F LL L +
Sbjct: 177 YATVIMRLLRIRLVPSQRTSSRQV--SYEFQNRQLVWNAFTEFLIFILPLLQLPKLKRRI 234
Query: 207 KKPPRSRSTTTYKTV---------------CPRC----------------GGFPTNPYQI 235
++ +S + T V C C TNPYQ
Sbjct: 235 ERKLQSLNVTRVGNVEEASEGELAHLPQKTCAICFRDEEEQEGGGGASHYSTDVTNPYQA 294
Query: 236 ACCRANYCYVCVVKAL 251
C YCYVC+V L
Sbjct: 295 DCGHV-YCYVCLVTKL 309
>gb|EDL05216.1| peroxisomal membrane protein 3, isoform CRA_b [Mus musculus]
Length = 307
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 62/287 (21%), Positives = 110/287 (38%), Gaps = 45/287 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 18 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKAFLWLFLWRFTI-YSKNA 76
Query: 61 TYGSALSGV----------VFQCRKRT---LYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++Q +T Y V + G ++ + +F H +
Sbjct: 77 TVGQSVLNIQYKNDSSLNLIYQPPSKTQKLWYAVCTIGGKWLEERCYDLFRNRHLASFGK 136
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ ++ L ++ NFL FL F + R +HS
Sbjct: 137 AKQFMNFLVGLLKLGELINFLIFL-----QKGKFATLTERLLGIHSVFCKP--------- 182
Query: 168 YSNSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRGL--------LTFVKKPPRSRSTTT 217
N G EY NR+LLW+ E +F L+ + L + + +
Sbjct: 183 -QNMREVGFEYMNRELLWHGFAEFLIFLLPLINIQKLKAKLSSWCIPLTGAAGHDSTLGS 241
Query: 218 YKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
C CG +PT P+ I C +CY CV + + + C CG+
Sbjct: 242 SGKECALCGEWPTMPHTIGCEHV-FCYYCVKSSFLFDIYFTCPKCGT 287
>ref|NP_033020.2| peroxin 2 [Mus musculus]
gb|AAB91465.1| peroxisome membrane protein PEX2 [Mus musculus]
gb|AAH12404.1| Peroxisomal membrane protein 3 [Mus musculus]
dbj|BAE30130.1| unnamed protein product [Mus musculus]
dbj|BAE31130.1| unnamed protein product [Mus musculus]
gb|EDL05215.1| peroxisomal membrane protein 3, isoform CRA_a [Mus musculus]
Length = 305
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 62/287 (21%), Positives = 110/287 (38%), Gaps = 45/287 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKAFLWLFLWRFTI-YSKNA 74
Query: 61 TYGSALSGV----------VFQCRKRT---LYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++Q +T Y V + G ++ + +F H +
Sbjct: 75 TVGQSVLNIQYKNDSSLNLIYQPPSKTQKLWYAVCTIGGKWLEERCYDLFRNRHLASFGK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ ++ L ++ NFL FL F + R +HS
Sbjct: 135 AKQFMNFLVGLLKLGELINFLIFL-----QKGKFATLTERLLGIHSVFCKP--------- 180
Query: 168 YSNSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRGL--------LTFVKKPPRSRSTTT 217
N G EY NR+LLW+ E +F L+ + L + + +
Sbjct: 181 -QNMREVGFEYMNRELLWHGFAEFLIFLLPLINIQKLKAKLSSWCIPLTGAAGHDSTLGS 239
Query: 218 YKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
C CG +PT P+ I C +CY CV + + + C CG+
Sbjct: 240 SGKECALCGEWPTMPHTIGCEHV-FCYYCVKSSFLFDIYFTCPKCGT 285
>ref|NP_565222.1| TED3 (REVERSAL OF THE DET PHENOTYPE); protein binding / zinc ion
binding [Arabidopsis thaliana]
sp|Q9CA86|PEX2_ARATH Peroxisome assembly protein 2 (Peroxin-2) (AthPEX2) (Pex2p)
gb|AAG52254.1|AC011717_22 putative RING finger protein; 84236-82024 [Arabidopsis thaliana]
gb|AAL36419.1| unknown protein [Arabidopsis thaliana]
gb|AAM20014.1| unknown protein [Arabidopsis thaliana]
Length = 333
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 176 LEYQNRQLLWNALLELFS------NTLLTKRGLLTFVKKPPRSRSTTTYKTVCPRCGGFP 229
EY NRQL+WN E+ N+ K L F K +S ST CP C P
Sbjct: 227 FEYMNRQLVWNEFSEMLLLLLPLLNSSAVKNILSPFAKD--KSSSTKEDTVTCPICQVDP 284
Query: 230 TNPYQIACCRANYCYVCV 247
P+ C+ YCY C+
Sbjct: 285 AIPFIALPCQHRYCYYCI 302
>gb|AAH00661.1| Peroxisomal membrane protein 3, 35kDa (Zellweger syndrome) [Homo
sapiens]
Length = 305
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 63/291 (21%), Positives = 110/291 (37%), Gaps = 53/291 (18%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKACLWVFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++ ++ Y V + G ++ + +F H +
Sbjct: 75 TVGQSVLNIKYKNDFSPNLRYQPPSKNQKIWYAVCTIGGRWLEERCYDLFRNHHLASFGK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHST----RLIRDGSAI 163
+ +V L + NFL FL F + R +HS + IR+
Sbjct: 135 VKQCVNFVIGLLKLGGLINFLIFL-----QRGKFATLTERLLGIHSVFCKPQNIRE---- 185
Query: 164 ASEFYSNSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRGL--------LTFVKKPPRSR 213
G EY NR+LLW+ E +F L+ + L + P
Sbjct: 186 ----------VGFEYMNRELLWHGFAEFLIFLLPLINVQKLKAKLSSWCIPLTGAPNSDN 235
Query: 214 STTTYKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
+ T C CG PT P+ I C +CY C + + + C CG+
Sbjct: 236 TLATSGKECALCGERPTMPHTIG-CEHIFCYFCAKSSFLFDVYFTCPKCGT 285
>ref|NP_974183.1| TED3 (REVERSAL OF THE DET PHENOTYPE); protein binding / zinc ion
binding [Arabidopsis thaliana]
Length = 282
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 176 LEYQNRQLLWNALLELFS------NTLLTKRGLLTFVKKPPRSRSTTTYKTVCPRCGGFP 229
EY NRQL+WN E+ N+ K L F K +S ST CP C P
Sbjct: 176 FEYMNRQLVWNEFSEMLLLLLPLLNSSAVKNILSPFAKD--KSSSTKEDTVTCPICQVDP 233
Query: 230 TNPYQIACCRANYCYVCV 247
P+ C+ YCY C+
Sbjct: 234 AIPFIALPCQHRYCYYCI 251
>ref|XP_684073.1| PREDICTED: similar to Peroxisome assembly factor 1 (PAF-1)
(Peroxin-2) (Peroxisomal membrane protein 3) (35 kDa
peroxisomal membrane protein) (RING finger protein 72)
[Danio rerio]
ref|XP_001343742.1| PREDICTED: similar to Peroxisome assembly factor 1 (PAF-1)
(Peroxin-2) (Peroxisomal membrane protein 3) (35 kDa
peroxisomal membrane protein) (RING finger protein 72)
[Danio rerio]
Length = 321
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 70/290 (24%), Positives = 108/290 (37%), Gaps = 50/290 (17%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD+ LD L WS+F F + E L ++ + RF Y +S
Sbjct: 32 RISQLDAFELDGALEQLVWSQFTQCFQHFKPGILTPVEPELKALLQLLLWRFTI-YSNSA 90
Query: 61 TYGSALSGVVFQ------------CRKRTLYVVTVLAGYVW-KKITHIIF-NGPHCGNQM 106
T G +L + ++ R + + + G W ++ +H +F N P N
Sbjct: 91 TVGQSLLNIRYKNALIPGQKYRPMSRPQKFWFALLTVGEKWFRERSHSLFLNHPAESNAR 150
Query: 107 MWLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASE 166
K+ + L + NFL FL F + RL+ +
Sbjct: 151 KARKVLSILLGLTKAASLVNFLLFLQRG-------------TFPTLTERLLGVQPVFSRP 197
Query: 167 FYSNSVFAGLEYQNRQLLWNALLELFS------NTLLTKRGLLTFVKKPPRS------RS 214
+ +Y NR+LLW+ E N K G+ P S S
Sbjct: 198 QGPRDI--NFQYLNRELLWHGFAEFLIFLLPLINVWKLKAGVSALFS--PLSDLTGTQSS 253
Query: 215 TTTYKTVCPRCGGFPTNPYQIACCRANYCYVCV---VKALEWSMCDACGS 261
T+ T C CG +PT P+ I C+ +CY CV V A + C CG+
Sbjct: 254 EETHLTECAICGEWPTMPHSIG-CKHVFCYYCVKSNVIADIYFTCPKCGA 302
>ref|XP_001089931.1| PREDICTED: similar to Peroxisome assembly factor 1 (PAF-1)
(Peroxin-2) (Peroxisomal membrane protein 3) (35 kDa
peroxisomal membrane protein) (RING finger protein 72)
[Macaca mulatta]
Length = 253
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 14/100 (14%)
Query: 175 GLEYQNRQLLWNALLE--LFSNTLLTKRGL--------LTFVKKPPRSRSTTTYKTVCPR 224
G EY NR+LLW+ E +F L++ + L + P + T C
Sbjct: 135 GFEYMNRELLWHGFAEFLIFLLPLISVQKLKAKLSSWCIPLTGAPNSDNTLATSGKECSL 194
Query: 225 CGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
CG +PT P+ I C +CY C + + M C CG+
Sbjct: 195 CGEWPTMPHTIG-CEHIFCYFCAKSSFLFDMYFTCPKCGT 233
>ref|NP_001016841.1| peroxin 2 [Xenopus tropicalis]
emb|CAJ82611.1| peroxisomal membrane protein 3, 35kDa (Zellweger syndrome) [Xenopus
tropicalis]
gb|AAI21554.1| Peroxisomal membrane protein 3 [Xenopus tropicalis]
Length = 306
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 68/290 (23%), Positives = 108/290 (37%), Gaps = 50/290 (17%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHKEEWELALNTVVFMCATRFLPHYG---SS 59
R++QLD+I L+K L WS+FN+ F + F+C FL Y +
Sbjct: 16 RISQLDAIELNKALEQLIWSQFNSCFQGFKPGLLTRFEPEIKAFLCL--FLWRYTIYTKN 73
Query: 60 CTYGSALSGVVFQC------------RKRTLYVVTVLAGYVW-KKITHIIFNGPHCGNQM 106
T G A+ + ++ +++ ++ + G W ++ + +F+ G
Sbjct: 74 ATVGQAILNMQYKNDLEATKNYRPLNKQQKVWFALFMVGGKWLEERSFDLFSNHPFGASF 133
Query: 107 MWLKLY--KWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIA 164
K + LL G + NFL FL F + RL+ S +
Sbjct: 134 QRTKYFLNAISGLLKFGA-LLNFLIFLQQG-------------KFATLTERLLGIRSVFS 179
Query: 165 SEFYSNSVFAGLEYQNRQLLWNALLEL------FSNTLLTKRGLLTFVKKPP-RSRSTTT 217
V G EY NR++LW+ E NT K L ++ K S S +
Sbjct: 180 RPQDVRQV--GFEYMNREILWHGFAEFLIFLLPLINTQKLKSKLFSWCKPAKGHSLSDPS 237
Query: 218 YKTVCPR---CGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
+C CG +P P+ I C +CY C+ M C C S
Sbjct: 238 LAVICKECCLCGEWPAMPHTIGCSHV-FCYYCIKSNYMADMYFTCPKCSS 286
>gb|AAM61388.1| putative RING finger protein [Arabidopsis thaliana]
Length = 333
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Query: 176 LEYQNRQLLWNALLELFS------NTLLTKRGLLTFVKKPPRSRSTTTYKTVCPRCGGFP 229
EY NRQL+WN E+ N+ K L F K +S ST CP C P
Sbjct: 227 FEYMNRQLVWNEFSEMLLLLLPLLNSSAVKNILSPFAKD--KSSSTKEDTVTCPICQVDP 284
Query: 230 TNPYQIACCRANYCYVCV 247
P C+ YCY C+
Sbjct: 285 AIPXIALPCQHRYCYYCI 302
>ref|XP_504845.1| YlPEX2 [Yarrowia lipolytica]
sp|Q99155|PEX2_YARLI Peroxisomal biogenesis factor 2 (Peroxin-2) (Peroxisomal protein
PAY5)
emb|CAG77647.1| YlPEX2 [Yarrowia lipolytica CLIB122]
Length = 381
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 79/316 (25%), Positives = 113/316 (35%), Gaps = 90/316 (28%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNT--SEHKEEWE----LALNTVVFMCATRFLPHY 56
RV QLD+ LD EL ++ F E ++++E LAL ++F L +
Sbjct: 18 RVHQLDASLLDAELVDLLKNQLFKGFTNFHPEFRDKYESELVLALKLILFK-----LTVW 72
Query: 57 GSSCTYGSALSGVVF--------------QCRKRTLYVVTVLAGYVWKKITHIIF----- 97
+ TYG L + F +K ++ V GY+W KI +
Sbjct: 73 DHAITYGGKLQNLKFIDSRHSSKLQIQPSVIQKLGYGILVVGGGYLWSKIEGYLLARSED 132
Query: 98 ---------NGPHCGNQMMWLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRA 148
G LK+ + +LLY + NF+ FL G A + L R
Sbjct: 133 DVATDGTSVRGASAARGA--LKVANFASLLYSAATLGNFVAFLYT-GRYATVIMR-LLRI 188
Query: 149 FNVHSTRLIRDGSAIASEFYSNSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRGLLTFV 206
V S R ++S E+QNRQL+WNA E +F LL L +
Sbjct: 189 RLVPSQR-------------TSSRQVSYEFQNRQLVWNAFTEFLIFILPLLQLPKLKRRI 235
Query: 207 KKPPRSRSTTTYKTV---------------CPRC----------------GGFPTNPYQI 235
++ +S + T V C C TNPYQ
Sbjct: 236 ERKLQSLNVTRVGNVEEASEGELAHLPQKTCAICFRDEEEQEGGGGASHYSTDVTNPYQA 295
Query: 236 ACCRANYCYVCVVKAL 251
C YCYVC+V L
Sbjct: 296 DCGHV-YCYVCLVTKL 310
>ref|XP_519817.2| PREDICTED: peroxisomal membrane protein 3 [Pan troglodytes]
Length = 326
Score = 43.9 bits (102), Expect = 0.014, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 14/100 (14%)
Query: 175 GLEYQNRQLLWNALLE--LFSNTLLTKRGL--------LTFVKKPPRSRSTTTYKTVCPR 224
G EY NR+LLW+ E +F L+ + L + P + T C
Sbjct: 208 GFEYMNRELLWHGFAEFLIFLLPLINVQKLKAKLSSWCIPLTGAPNSDNTLATSGKECAL 267
Query: 225 CGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
CG +PT P+ I C +CY C + + M C CG+
Sbjct: 268 CGEWPTMPHTIG-CEHIFCYFCAKSSFLFDMYFTCPKCGT 306
>sp|Q06438|PEX2_CRIGR Peroxisome assembly factor 1 (PAF-1) (Peroxin-2) (Peroxisomal
membrane protein 3)
emb|CAA78929.1| peroxisome assembly factor 1 [Cricetulus griseus]
dbj|BAA06308.1| peroxisome assembly factor-1 [Cricetulus griseus]
Length = 304
Score = 42.4 bits (98), Expect = 0.035, Method: Composition-based stats.
Identities = 69/300 (23%), Positives = 112/300 (37%), Gaps = 73/300 (24%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 15 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKACLWLFLWRFTI-YSKNA 73
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPH------ 101
T G ++ + ++ ++ Y V + G ++ + +F H
Sbjct: 74 TVGQSVLNIQYKNDFSSNSRYQPPSKNQKLWYAVCTIGGRWLEERCYDLFRNRHLASFGK 133
Query: 102 ---CGNQMMWLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHST---- 154
C N M V LL G ++ NFL FL F + R +HS
Sbjct: 134 VKQCMNVM--------VGLLKLG-ELINFLIFL-----QKGKFATLTERLLGIHSVFCKP 179
Query: 155 RLIRDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFSNTLLTKRGLLTFVKKPPR--- 211
+ IR+ G +Y NR+LLW+ E F LL + F K
Sbjct: 180 QNIRE--------------VGFDYMNRELLWHGFAE-FLIFLLPLINIQKFKAKLSSWCI 224
Query: 212 --------SRSTTTYKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACG 260
+ + C CG +PT P+ I C +CY CV + + M C CG
Sbjct: 225 PLTGAASSDSALASSGKECALCGEWPTMPHTIGCEHV-FCYYCVKSSFLFDMYFTCPKCG 283
>ref|XP_001528114.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gb|EDK42456.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 470
Score = 42.0 bits (97), Expect = 0.042, Method: Composition-based stats.
Identities = 63/247 (25%), Positives = 103/247 (41%), Gaps = 51/247 (20%)
Query: 2 SRVAQLDSIALDKELYGQFWSEFNAAF---------------NTSEHKEEWELALNTVVF 46
SRV+QLD+ LD EL+ + + F + S+H E + L LN ++F
Sbjct: 9 SRVSQLDAGILDTELFTLLKDQVKSIFQLHETSGTNSYASHLSYSKHPELYSLLLNLLIF 68
Query: 47 MCATRFLPHYGSSCTYGSAL---------SGVVFQCRKRTLYVVTVLAGYVWKKITHIIF 97
L + S +YGS+L +G V K+ L + V+ Y++K++ +++
Sbjct: 69 K-----LTVWKSGASYGSSLQNLKLTNVKNGQVIGLNKKGLLLAVVVGTYLYKRVETLLY 123
Query: 98 NGPHCGNQMMWLKLYKWVNLLYHGCDVTNFLRFLA--------AEGPNARAFL------S 143
+ Y + + V N + L A N FL S
Sbjct: 124 QMDENEIEAEASGDYDSIRYKFKSFVVNNRNKVLTKIDDVLKIANLINFTMFLVNGKYSS 183
Query: 144 PLYRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRG 201
++R F + T LI D +F ++V E+QNRQL+WN + E +F LL R
Sbjct: 184 IVHRLFGITETPLISD----LLKFNGSNV--NYEFQNRQLVWNVMTEFLVFLLPLLQVRK 237
Query: 202 LLTFVKK 208
L + + K
Sbjct: 238 LRSTMGK 244
>gb|ABQ22826.1| peroxisome assembly factor 1-like protein [Callithrix jacchus]
Length = 125
Score = 41.6 bits (96), Expect = 0.057, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 14/100 (14%)
Query: 175 GLEYQNRQLLWNALLE--LFSNTLLTKRGL--------LTFVKKPPRSRSTTTYKTVCPR 224
G EY NR+LLW+ E +F L+ + L + P T C
Sbjct: 7 GFEYMNRELLWHGFAEFLIFLLPLINVQKLKAKLSSWCIPLTGAPNSDNVLATSGKECSL 66
Query: 225 CGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
CG +PT P+ I C +CY C + + M C CG+
Sbjct: 67 CGEWPTLPHTIG-CEHIFCYFCAKSSFLFDMYFTCPKCGT 105
>ref|XP_001657838.1| hypothetical protein AaeL_AAEL006463 [Aedes aegypti]
gb|EAT41950.1| conserved hypothetical protein [Aedes aegypti]
Length = 320
Score = 40.8 bits (94), Expect = 0.093, Method: Composition-based stats.
Identities = 40/165 (24%), Positives = 65/165 (39%), Gaps = 19/165 (11%)
Query: 100 PHCGNQMMWLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRL--- 156
P N+++ K+ ++ + G + ++ +LA GP SP+ RA N+ T L
Sbjct: 136 PVSQNKLLLTKVVPYLRTYFEGVKLFQYITYLAGIGPTH----SPVLRALNLTLTYLAEE 191
Query: 157 -----IRD---GSAIASEFYSNSVFAGLEYQNRQLLWNALLELFSNTL-LTKRGLLTFVK 207
IRD G + S + LE + +E + N + L
Sbjct: 192 EESWTIRDLFGGQVKLATMLSTVMLRTLEL---SAFFLQFIEWWQNEANMGDLSKLPVPN 248
Query: 208 KPPRSRSTTTYKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALE 252
PP ++ YK +CP C P I+ YCY C+V L+
Sbjct: 249 APPADFNSEKYKGICPLCLQRWLIPTAISISGYVYCYRCIVTYLQ 293
>ref|XP_001220945.1| hypothetical protein CHGG_01724 [Chaetomium globosum CBS 148.51]
gb|EAQ93489.1| hypothetical protein CHGG_01724 [Chaetomium globosum CBS 148.51]
Length = 597
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 84/356 (23%), Positives = 120/356 (33%), Gaps = 127/356 (35%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFN-----------------TSEHKEEWE----LAL 41
RV Q+D+ LD+EL G + A S +WE L L
Sbjct: 139 RVGQVDAELLDEELVGLLRGQVGDALRYVGGGVGGGGGGAGGAGGSAVLHDWEAEVSLVL 198
Query: 42 NTVVFMCATRFLPHYGSSCTYGSALSGVVFQCRKR-------------TLY-VVTVLAGY 87
V+F L + TYG+AL + + +R +LY +VTV Y
Sbjct: 199 RAVLFK-----LTVWDHDATYGAALQNLRYTDARRDGPGLVPPSKWQKSLYGLVTVGGRY 253
Query: 88 VWKKITHII------FNGPHCGNQMMWLKLYKWVNLL---YHGCDVTNFLRFLAAEGPNA 138
+W K + F GP G Q +L +W ++L + +FL FL
Sbjct: 254 LWAKWEDWLLEQDDGFQGPSPGAQ----RLARWSSMLSTMHASAAFASFLVFL------- 302
Query: 139 RAFLSPLYRAF--NVHSTRLIRDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELF---- 192
L YR V RL S ++ E EY NRQL+W+A E
Sbjct: 303 ---LHGRYRTLLDRVLRMRLAPPTSQVSRE-------VSFEYLNRQLVWHAFTEFLLFVL 352
Query: 193 ------------------SNTLLT--------KRGLLTFVKKPPRSRS------------ 214
+ ++T K+G +F+ P R+ +
Sbjct: 353 PLVGINRWRRWLARTWRKTKKIMTTGAEGADEKKGEYSFL--PERTCAICYQDQNSVSSE 410
Query: 215 ----TTTYKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALE------WSMCDACG 260
T V TNPY C YC+VC+ +E WS C CG
Sbjct: 411 NDLMAATSSGVVGSAQTDITNPYATIPCGCIYCFVCLTTRIEREEGEGWS-CLRCG 465
>ref|XP_342603.3| PREDICTED: similar to regulator of telomere elongation helicase 1
[Rattus norvegicus]
ref|XP_001057789.1| PREDICTED: similar to regulator of telomere elongation helicase 1
[Rattus norvegicus]
Length = 1274
Score = 38.9 bits (89), Expect = 0.38, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 204 TFVKKPPR---SRSTTTYKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWS-MCDAC 259
T ++ PPR +T+ + VCP C T +Q C C C + L+ S +C AC
Sbjct: 1197 TIMQLPPRLPPEHTTSQWNFVCPACATEDTVLFQCPSCDFCRCRACWQRQLQASRLCPAC 1256
Query: 260 GSSGR 264
G+ R
Sbjct: 1257 GAVNR 1261
>ref|XP_001912471.1| unnamed protein product [Podospora anserina]
sp|P51021|PEX2_PODAN Peroxisomal biogenesis factor 2 (Peroxin-2) (Peroxisomal protein
CAR1)
emb|CAA60739.1| peroxisome assembly factor [Podospora anserina]
emb|CAP59952.1| unnamed protein product [Podospora anserina]
Length = 554
Score = 38.9 bits (89), Expect = 0.41, Method: Composition-based stats.
Identities = 70/295 (23%), Positives = 104/295 (35%), Gaps = 81/295 (27%)
Query: 34 KEEWE----LALNTVVFMCATRFLPHYGSSCTYGSALSGVVFQCRKRTLYVVTVLAGYVW 89
K EW+ LAL V+F L + TYG+AL + + + T V+ + W
Sbjct: 155 KHEWDAEISLALRAVIFK-----LTIWDHDATYGAALQNLKYTDARHTGSVLVPPSK--W 207
Query: 90 KKITHIIFNGPHCGNQMMWLKLYKWVNLLYHGCD-----------VTNFLRFLAAEGPNA 138
+K + + G + MW K W+ G D +T+ L L A A
Sbjct: 208 QKGLYGLMT---VGGRYMWSKWENWLREQDGGYDEPSPTVQRLSSMTDRLSTLHAAASFA 264
Query: 139 RAFLSPLYRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQNRQLLWNALLE--LFSNTL 196
+ L + R++R A + S V EY NRQL+W+A E LF L
Sbjct: 265 SFLVFLLQGRYRTLLDRVLRMRLAPPTSQVSREV--SFEYLNRQLVWHAFTEFLLFVLPL 322
Query: 197 LT----KRGLLTFVKKPPRSRSTTTYKTVCPRCGGFP----------------------- 229
+ +R L +K + STT + + G F
Sbjct: 323 VGINRWRRWLARTWRKTKKIMSTTGGEGAEEKKGEFAFLPERTCAICYQDQNQATNENEL 382
Query: 230 ------------------TNPYQIACCRANYCYVCVVKALE------WSMCDACG 260
TNPY+ C YC+VC+ +E W+ C CG
Sbjct: 383 MAAATSKTGVVGSAQTDVTNPYETIPCGCVYCFVCLATRIEREEGEGWN-CLRCG 436
>gb|AAL29060.2| LD46714p [Drosophila melanogaster]
Length = 306
Score = 38.9 bits (89), Expect = 0.45, Method: Composition-based stats.
Identities = 57/237 (24%), Positives = 88/237 (37%), Gaps = 58/237 (24%)
Query: 57 GSSC-TYGSALSGVVFQCRKRTL------YVVTVLAGYV--W--KKITHIIFNGPHCGNQ 105
G C T+G L + + K T+ +++TVL GYV W +++T +
Sbjct: 88 GKRCSTFGQQLLVLAYDAEKLTVSRLVLHFILTVLPGYVKSWEERRLTRRV---EWFSEA 144
Query: 106 MMWLKLYKWVNLLYHGCDVTNFLRFL-AAEGPNARAFLSPL-YRAFNVHSTRLIRDGSAI 163
+MW++ + ++ N+ RFL P +L L Y + + R I
Sbjct: 145 IMWVENSALI------LNILNYFRFLKTGRKPTLVDYLLGLDYISLRNNQRRDI------ 192
Query: 164 ASEFYSNSVFAGLEYQNRQLLWNALLELFSNTL--LTKRGLLTFVKK------------- 208
G +Y R+LLW +E+ L + R L +K
Sbjct: 193 -----------GYKYLTRELLWGGFMEILGLVLPIINFRKLQRVLKSWTFSGRRLEDRDG 241
Query: 209 PPRSRSTTTYKTVCPRCGGFPTNPYQIACCRANYCYVCV---VKALEWSMCDACGSS 262
P T T C CG PT P+ + C YCY C+ V C CGS+
Sbjct: 242 PAFLAPQMTLSTTCTFCGERPTLPHHMGCGHI-YCYYCLNANVLTDASFCCPNCGSA 297
>emb|CAF97942.1| unnamed protein product [Tetraodon nigroviridis]
Length = 378
Score = 38.5 bits (88), Expect = 0.49, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 16/104 (15%)
Query: 177 EYQNRQLLWNALLELFS------NTLLTKRGLLTFVKKPPRSRSTTTYK-----TVCPRC 225
+Y NR+LLW+ E NT K +FV ++ + C C
Sbjct: 235 QYMNRELLWHGFSEFLIFLLPLINTRRLKATASSFVFGGAKTEGKVASEGQGLLNQCGLC 294
Query: 226 GGFPTNPYQIACCRANYCYVCVVK---ALEWSMCDACGS-SGRL 265
G +PT P+ + CR +CY C+ A + +C CG+ +G+L
Sbjct: 295 GEWPTMPHTVG-CRHVFCYYCIKSHSMADPFLVCPKCGAEAGQL 337
>gb|AAH86436.1| Rtel1 protein [Rattus norvegicus]
Length = 377
Score = 38.5 bits (88), Expect = 0.50, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 204 TFVKKPPR---SRSTTTYKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWS-MCDAC 259
T ++ PPR +T+ + VCP C T +Q C C C + L+ S +C AC
Sbjct: 300 TIMQLPPRLPPEHTTSQWNFVCPACATEDTVLFQCPSCDFCRCRACWQRQLQASRLCPAC 359
Query: 260 GSSGR 264
G+ R
Sbjct: 360 GAVNR 364
>ref|XP_964597.1| peroxisomal biogenesis factor 2 [Neurospora crassa OR74A]
gb|EAA35361.1| peroxisomal biogenesis factor 2 [Neurospora crassa OR74A]
Length = 639
Score = 38.5 bits (88), Expect = 0.53, Method: Composition-based stats.
Identities = 58/224 (25%), Positives = 88/224 (39%), Gaps = 55/224 (24%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFN------TSEHKEEWE----LALNTVVFMCATRF 52
RV Q+D+ LD EL ++ A +S K+EW+ L L ++F
Sbjct: 115 RVGQVDAELLDAELVDLLRTQVGDALKYIGGGVSSTLKDEWDAEILLILRAILFK----- 169
Query: 53 LPHYGSSCTYGSAL----------SGVVFQCR---KRTLY-VVTVLAGYVWKKITHIIFN 98
L + TYG+AL SG V Q +++LY VTV Y+W K + +
Sbjct: 170 LTIWDHDATYGAALQNLRYTDARKSGPVLQPPSKLQKSLYGFVTVGGKYLWTKWETYLLD 229
Query: 99 ----------GPHCGNQMMWLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRA 148
GP+ Q + +L + + + +FL FL L+
Sbjct: 230 HDEASSYSVEGPNPNIQRL-SRLTESIGTFHAFASFASFLVFL-------------LHGR 275
Query: 149 FNVHSTRLIRDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELF 192
+ RL+R A + S V EY NRQL+W+A E
Sbjct: 276 YRTILDRLLRMRLAPPTSQVSREV--SFEYLNRQLVWHAFTEFL 317
>ref|NP_648210.1| CG7081 CG7081-PA [Drosophila melanogaster]
gb|AAF50441.1| CG7081-PA [Drosophila melanogaster]
Length = 281
Score = 38.1 bits (87), Expect = 0.73, Method: Composition-based stats.
Identities = 57/237 (24%), Positives = 88/237 (37%), Gaps = 58/237 (24%)
Query: 57 GSSC-TYGSALSGVVFQCRKRTL------YVVTVLAGYV--W--KKITHIIFNGPHCGNQ 105
G C T+G L + + K T+ +++TVL GYV W +++T +
Sbjct: 63 GKRCSTFGQQLLVLAYDAEKLTVSRLVLHFILTVLPGYVKSWEERRLTRRV---EWFSEA 119
Query: 106 MMWLKLYKWVNLLYHGCDVTNFLRFL-AAEGPNARAFLSPL-YRAFNVHSTRLIRDGSAI 163
+MW++ + ++ N+ RFL P +L L Y + + R I
Sbjct: 120 IMWVENSALI------LNILNYFRFLKTGRKPTLVDYLLGLDYISLRNNQRRDI------ 167
Query: 164 ASEFYSNSVFAGLEYQNRQLLWNALLELFSNTL--LTKRGLLTFVKK------------- 208
G +Y R+LLW +E+ L + R L +K
Sbjct: 168 -----------GYKYLTRELLWGGFMEILGLVLPIINFRKLQRVLKSWTFSGRRLEDRDG 216
Query: 209 PPRSRSTTTYKTVCPRCGGFPTNPYQIACCRANYCYVCV---VKALEWSMCDACGSS 262
P T T C CG PT P+ + C YCY C+ V C CGS+
Sbjct: 217 PAFLAPQMTLSTTCTFCGERPTLPHHMGCGHI-YCYYCLNANVLTDASFCCPNCGSA 272
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
ref|NP_012325.1| RING-finger peroxin, peroxisomal membrane ... 381 e-104
dbj|BAE27238.1| unnamed protein product [Mus musculus] 308 3e-82
sp|P24392|PEX2_RAT Peroxisome assembly factor 1 (PAF-1) (Pe... 307 8e-82
ref|XP_001490672.1| PREDICTED: similar to Peroxisome assemb... 306 9e-82
ref|NP_001093818.1| peroxin 2 [Bos taurus] >gi|151554728|gb... 305 2e-81
ref|NP_058930.1| peroxin 2 [Rattus norvegicus] >gi|1109648|... 304 3e-81
sp|P55098|PEX2_MOUSE Peroxisome assembly factor 1 (PAF-1) (... 303 9e-81
ref|NP_000309.1| peroxin 2 [Homo sapiens] >gi|121114290|ref... 303 1e-80
gb|ABZ92521.1| peroxisomal membrane protein 3, 35kDa (Zellw... 303 1e-80
ref|XP_544136.2| PREDICTED: similar to Peroxisome assembly ... 301 3e-80
gb|EAW87052.1| peroxisomal membrane protein 3, 35kDa (Zellw... 300 6e-80
ref|NP_982853.1| ABL094Wp [Ashbya gossypii ATCC 10895] >gi|... 293 8e-78
ref|XP_001377812.1| PREDICTED: similar to Peroxisome assemb... 291 4e-77
ref|XP_447524.1| hypothetical protein CAGL0I06292g [Candida... 282 2e-74
ref|XP_001646918.1| hypothetical protein Kpol_2000p24 [Vand... 279 1e-73
ref|NP_001008454.1| peroxin 2 [Gallus gallus] >gi|53127700|... 270 8e-71
ref|XP_457905.1| hypothetical protein DEHA0C05720g [Debaryo... 215 4e-54
ref|XP_001483143.1| hypothetical protein PGUG_05098 [Pichia... 211 6e-53
ref|XP_453090.1| unnamed protein product [Kluyveromyces lac... 207 6e-52
ref|XP_001387892.2| peroxisome assembly protein (Peroxin-2)... 202 2e-50
ref|XP_714968.1| peroxisomal import RING finger complex com... 198 3e-49
sp|Q01964|PEX2_PICPA Peroxisomal biogenesis factor 2 (Perox... 197 9e-49
gb|AAT97412.1| peroxin 2 [Pichia angusta] 194 6e-48
emb|CAO02572.1| peroxisomal membrane protein [Kluyveromyces... 185 2e-45
gb|AAC49423.1| Pay5p 184 4e-45
emb|CAO45868.1| unnamed protein product [Vitis vinifera] 157 1e-36
ref|NP_001055075.1| Os05g0275700 [Oryza sativa (japonica cu... 151 5e-35
Sequences not found previously or not previously below threshold:
gb|EDL05216.1| peroxisomal membrane protein 3, isoform CRA_... 307 6e-82
ref|NP_033020.2| peroxin 2 [Mus musculus] >gi|2623264|gb|AA... 305 1e-81
gb|AAH00661.1| Peroxisomal membrane protein 3, 35kDa (Zellw... 299 2e-79
sp|Q06438|PEX2_CRIGR Peroxisome assembly factor 1 (PAF-1) (... 292 2e-77
ref|XP_519817.2| PREDICTED: peroxisomal membrane protein 3 ... 268 3e-70
ref|XP_001089931.1| PREDICTED: similar to Peroxisome assemb... 237 5e-61
ref|NP_001016841.1| peroxin 2 [Xenopus tropicalis] >gi|8927... 226 1e-57
ref|XP_684073.1| PREDICTED: similar to Peroxisome assembly ... 209 2e-52
ref|XP_504845.1| YlPEX2 [Yarrowia lipolytica] >gi|54041949|... 183 2e-44
ref|XP_001528114.1| conserved hypothetical protein [Loddero... 169 2e-40
emb|CAF97942.1| unnamed protein product [Tetraodon nigrovir... 163 1e-38
ref|XP_001202188.1| PREDICTED: similar to peroxisomal membr... 151 5e-35
ref|XP_964597.1| peroxisomal biogenesis factor 2 [Neurospor... 149 1e-34
ref|XP_001269799.1| peroxisome biosynthesis protein (Peroxi... 140 8e-32
ref|NP_565222.1| TED3 (REVERSAL OF THE DET PHENOTYPE); prot... 140 1e-31
ref|XP_750106.1| peroxisome biosynthesis protein (Peroxin-2... 139 1e-31
ref|XP_001265299.1| peroxisome biosynthesis protein (Peroxi... 139 2e-31
gb|EEH42793.1| peroxisomal biogenesis factor 2 [Paracoccidi... 139 3e-31
ref|XP_001220945.1| hypothetical protein CHGG_01724 [Chaeto... 139 3e-31
ref|XP_645304.1| RING Zn finger-containing protein [Dictyos... 138 4e-31
ref|XP_001816880.1| hypothetical protein [Aspergillus oryza... 138 4e-31
gb|AAM61388.1| putative RING finger protein [Arabidopsis th... 137 5e-31
ref|XP_368589.1| hypothetical protein MGG_00655 [Magnaporth... 137 7e-31
gb|EEH34726.1| peroxisomal biogenesis factor 2 [Paracoccidi... 136 2e-30
ref|XP_661660.1| hypothetical protein AN4056.2 [Aspergillus... 132 2e-29
ref|XP_001212277.1| peroxisomal biogenesis factor 2 [Asperg... 132 2e-29
ref|XP_380900.1| hypothetical protein FG00724.1 [Gibberella... 131 4e-29
ref|XP_001398873.1| hypothetical protein An18g04150 [Asperg... 131 4e-29
ref|XP_001781834.1| predicted protein [Physcomitrella paten... 131 7e-29
gb|ABQ22826.1| peroxisome assembly factor 1-like protein [C... 127 6e-28
ref|XP_001540740.1| peroxisomal biogenesis factor 2 [Ajello... 127 6e-28
gb|ABH11413.1| peroxin 2 [Penicillium chrysogenum] 126 2e-27
ref|XP_001559557.1| hypothetical protein BC1G_01713 [Botryo... 123 1e-26
ref|XP_001912471.1| unnamed protein product [Podospora anse... 123 2e-26
gb|EDU43666.1| peroxisomal biogenesis factor 2 [Pyrenophora... 121 5e-26
ref|XP_001593335.1| hypothetical protein SS1G_06257 [Sclero... 121 5e-26
ref|XP_001837282.1| hypothetical protein CC1G_00418 [Coprin... 121 6e-26
ref|NP_974183.1| TED3 (REVERSAL OF THE DET PHENOTYPE); prot... 119 2e-25
gb|ACO64229.1| predicted protein [Micromonas sp. RCC299] 116 2e-24
gb|AAF68113.1|AC010793_8 F20B17.23 [Arabidopsis thaliana] 109 2e-22
ref|XP_001650927.1| peroxisomal membrane protein, putative ... 103 2e-20
ref|XP_001790759.1| hypothetical protein SNOG_00062 [Phaeos... 103 2e-20
ref|XP_309872.4| AGAP010836-PA [Anopheles gambiae str. PEST... 102 3e-20
ref|XP_001245152.1| hypothetical protein CIMG_04593 [Coccid... 102 3e-20
ref|XP_001193457.1| PREDICTED: similar to Peroxisomal membr... 101 4e-20
ref|XP_001013694.1| Pex2 / Pex12 amino terminal region fami... 101 8e-20
gb|AAL29060.2| LD46714p [Drosophila melanogaster] 101 9e-20
ref|NP_648210.1| CG7081 CG7081-PA [Drosophila melanogaster]... 100 2e-19
ref|XP_001605507.1| PREDICTED: similar to peroxisomal membr... 99 4e-19
ref|XP_001625262.1| predicted protein [Nematostella vectens... 98 5e-19
gb|EAY97345.1| hypothetical protein OsI_018578 [Oryza sativ... 96 2e-18
ref|NP_502201.2| PeRoXisome assembly factor family member (... 96 3e-18
ref|XP_001354095.1| GA20087-PA [Drosophila pseudoobscura] >... 96 3e-18
ref|XP_001565685.1| glycosome import protein [Leishmania br... 96 4e-18
ref|XP_001670253.1| Hypothetical protein CBG06104 [Caenorha... 95 4e-18
gb|EAZ33629.1| hypothetical protein OsJ_017112 [Oryza sativ... 94 8e-18
ref|XP_756472.1| hypothetical protein UM00325.1 [Ustilago m... 93 2e-17
ref|XP_001846716.1| peroxisome assembly factor 1 [Culex pip... 91 1e-16
ref|XP_001683984.1| glycosome import protein (gim1) [Leishm... 89 3e-16
gb|AAB48828.1| Gim1 [Leishmania donovani] 89 4e-16
ref|XP_001466263.1| glycosome import protein (gim1) [Leishm... 89 4e-16
ref|XP_001732474.1| hypothetical protein MGL_0249 [Malassez... 88 6e-16
gb|AAQ04625.1|AF443186_1 peroxisome protein Pex2 [Paracocci... 85 5e-15
ref|XP_001876750.1| predicted protein [Laccaria bicolor S23... 84 1e-14
ref|XP_820860.1| peroxin-2, putative [Trypanosoma cruzi str... 81 7e-14
emb|CAL56641.1| putative peroxisome assembly protein 2 (ISS... 80 2e-13
ref|XP_566502.1| peroxisome assembly protein [Cryptococcus ... 80 2e-13
ref|XP_778153.1| hypothetical protein CNBA1530 [Cryptococcu... 80 2e-13
ref|XP_001519317.1| PREDICTED: similar to peroxisomal membr... 79 3e-13
emb|CAC59701.1| peroxin-2 [Trypanosoma brucei] 72 5e-11
ref|XP_843828.1| peroxin-2 [Trypanosoma brucei] >gi|6236026... 72 5e-11
gb|ACF22776.1| ring finger protein [Brachypodium distachyon] 71 7e-11
ref|XP_001421023.1| predicted protein [Ostreococcus lucimar... 71 1e-10
gb|EEH57229.1| predicted protein [Micromonas pusilla CCMP1545] 65 5e-09
ref|XP_001237561.2| AGAP010497-PA [Anopheles gambiae str. P... 56 4e-06
dbj|BAD14903.1| peroxisomal membrane protein 3 [Gallus gallus] 54 2e-05
ref|XP_974586.1| PREDICTED: similar to constitutive photomo... 52 4e-05
ref|XP_001657838.1| hypothetical protein AaeL_AAEL006463 [A... 51 1e-04
emb|CAE51310.1| crgA protein [Blakeslea trispora] 51 1e-04
ref|NP_587745.1| ubiquitin-protein ligase E3 (predicted) [S... 50 2e-04
emb|CAL53461.1| FOG: FHA domain (ISS) [Ostreococcus tauri] 49 3e-04
ref|XP_001844371.1| E3 ubiquitin-ligase protein COP1 [Culex... 49 5e-04
gb|ACO65879.1| predicted protein [Micromonas sp. RCC299] 48 5e-04
ref|XP_001765135.1| SNF2 family DNA-dependent ATPase [Physc... 48 7e-04
emb|CAO18224.1| unnamed protein product [Vitis vinifera] 47 0.001
ref|NP_508904.2| C26B9.6 [Caenorhabditis elegans] >gi|34366... 47 0.001
emb|CAC83819.1| CrgA protein [Expression vector pEUKA4-crgA] 47 0.002
emb|CAB61339.2| carotenoid regulatory protein [Mucor circin... 47 0.002
gb|ACO61580.1| predicted protein [Micromonas sp. RCC299] 47 0.002
ref|XP_001741915.1| ariadne RING finger, putative [Entamoeb... 47 0.002
ref|XP_001026980.1| DNA repair helicase (rad3) [Tetrahymena... 47 0.002
ref|NP_001071934.1| zinc finger protein [Ciona intestinalis... 47 0.002
ref|XP_001223204.1| hypothetical protein CHGG_03990 [Chaeto... 47 0.002
ref|NP_594437.1| ubiquitin-protein ligase E3 (predicted) [S... 46 0.002
ref|NP_196132.2| SNF2 domain-containing protein / helicase ... 46 0.002
sp|Q9FF61|SM3L1_ARATH Putative SWI/SNF-related matrix-assoc... 46 0.003
ref|XP_001643793.1| hypothetical protein Kpol_480p22 [Vande... 46 0.003
ref|XP_447681.1| hypothetical protein CAGL0I09988g [Candida... 46 0.003
gb|EDU45409.1| conserved hypothetical protein [Pyrenophora ... 46 0.004
ref|XP_001463446.1| hypothetical protein, conserved [Leishm... 46 0.004
ref|XP_719667.1| hypothetical protein CaO19_9644 [Candida a... 46 0.004
ref|NP_509369.2| C02B8.6 [Caenorhabditis elegans] >gi|21431... 45 0.005
ref|XP_001418208.1| predicted protein [Ostreococcus lucimar... 45 0.005
ref|XP_001799256.1| hypothetical protein SNOG_08951 [Phaeos... 45 0.006
ref|XP_001332118.1| PREDICTED: similar to constitutive phot... 45 0.006
ref|NP_001083011.1| hypothetical protein LOC100037391 [Dani... 45 0.006
ref|XP_001681151.1| hypothetical protein, conserved [Leishm... 45 0.007
ref|XP_697907.2| PREDICTED: similar to constitutive photomo... 45 0.007
gb|EEH60667.1| predicted protein [Micromonas pusilla CCMP1545] 44 0.008
ref|XP_001794456.1| hypothetical protein SNOG_03911 [Phaeos... 44 0.008
ref|NP_001116534.1| hypothetical protein LOC100144568 [Dani... 44 0.008
ref|XP_001342896.1| PREDICTED: hypothetical protein [Danio ... 44 0.008
ref|XP_001602143.1| PREDICTED: hypothetical protein [Nasoni... 44 0.008
ref|XP_512083.2| PREDICTED: similar to ring finger protein ... 44 0.009
ref|NP_001048254.1| Os02g0771100 [Oryza sativa (japonica cu... 44 0.010
ref|NP_189307.2| zinc finger (C3HC4-type RING finger) famil... 44 0.010
dbj|BAA94422.1| COP1 [Oryza sativa Japonica Group] 44 0.010
emb|CAA66822.1| hypothetical protein [Arabidopsis thaliana] 44 0.011
ref|XP_644602.1| MEK1 interacting protein 1 [Dictyostelium ... 44 0.013
ref|XP_636746.1| hypothetical protein DDBDRAFT_0219336 [Dic... 44 0.014
ref|XP_001528679.1| DNA repair protein RAD5 [Lodderomyces e... 44 0.014
gb|EAY86041.1| hypothetical protein OsI_007274 [Oryza sativ... 44 0.015
ref|NP_001046958.1| Os02g0516600 [Oryza sativa (japonica cu... 44 0.015
gb|EAZ23220.1| hypothetical protein OsJ_006703 [Oryza sativ... 44 0.016
ref|XP_001564910.1| hypothetical protein LbrM21_V2.2090 [Le... 43 0.017
ref|XP_001704766.1| Zinc finger domain [Giardia lamblia ATC... 43 0.018
ref|XP_001429842.1| hypothetical protein GSPATT00005690001 ... 43 0.019
ref|XP_001234476.1| PREDICTED: similar to hemopoeitic linea... 43 0.019
gb|AAM21558.1|AF446007_1 MEK1 interacting protein 1 [Dictyo... 43 0.020
gb|AAC16087.1| unknown protein [Arabidopsis thaliana] 43 0.020
ref|NP_181969.2| protein binding / zinc ion binding [Arabid... 43 0.020
emb|CAB89694.1| constitutively photomorphogenic 1 protein [... 43 0.025
ref|XP_422114.2| PREDICTED: similar to rhysin 2 [Gallus gal... 43 0.026
gb|AAX26899.2| SJCHGC03553 protein [Schistosoma japonicum] 43 0.027
emb|CAB94800.1| COP1 regulatory protein [Pisum sativum] 43 0.029
ref|XP_537142.2| PREDICTED: similar to TNF receptor-associa... 42 0.031
gb|ABK21180.1| unknown [Picea sitchensis] 42 0.031
gb|EAZ24764.1| hypothetical protein OsJ_008247 [Oryza sativ... 42 0.034
ref|XP_001614431.1| hypothetical protein PVX_094820 [Plasmo... 42 0.035
ref|XP_001386438.2| associated with histones/Spt16/Pob3 [Pi... 42 0.035
gb|AAS45170.1| bloodthirsty [Notothenia coriiceps] 42 0.035
ref|XP_700683.2| PREDICTED: hypothetical protein [Danio rerio] 42 0.035
ref|XP_390004.1| hypothetical protein FG09828.1 [Gibberella... 42 0.036
emb|CAB89693.1| constitutively photomorphogenic 1 protein [... 42 0.037
tpg|DAA02480.1| TPA_inf: HDC06237 [Drosophila melanogaster] 42 0.037
emb|CAN71084.1| hypothetical protein [Vitis vinifera] 42 0.039
sp|P93471|COP1_PEA E3 ubiquitin-protein ligase COP1 (Consti... 42 0.040
emb|CAO24066.1| unnamed protein product [Vitis vinifera] 42 0.040
gb|AAD13530.2| major allergen Bla g 1.0101 [Blattella germa... 42 0.041
gb|ACI43177.1| TRAF5 [Canis lupus familiaris] 42 0.042
ref|NP_001061138.1| Os08g0180300 [Oryza sativa (japonica cu... 42 0.042
gb|EAZ05810.1| hypothetical protein OsI_027042 [Oryza sativ... 42 0.042
ref|XP_001662195.1| hypothetical protein AaeL_AAEL002729 [A... 42 0.045
ref|XP_001746192.1| predicted protein [Monosiga brevicollis... 42 0.045
gb|ABN08552.1| SNF2-related; Zinc finger, RING-type; ATP-re... 42 0.045
ref|XP_001730557.1| hypothetical protein MGL_2353 [Malassez... 42 0.045
ref|XP_001748213.1| predicted protein [Monosiga brevicollis... 42 0.046
ref|XP_001667669.1| Hypothetical protein CBG22172 [Caenorha... 42 0.047
ref|XP_001800760.1| hypothetical protein SNOG_10491 [Phaeos... 42 0.047
ref|XP_001850439.1| peroxisome assembly protein 12 [Culex p... 42 0.047
ref|NP_001016199.1| ring finger and WD repeat domain 2 [Xen... 42 0.048
gb|AAI61699.1| Unknown (protein for IMAGE:5537244) [Xenopus... 42 0.048
ref|XP_001484401.1| hypothetical protein PGUG_03782 [Pichia... 42 0.048
ref|XP_772319.1| hypothetical protein CNBL1870 [Cryptococcu... 42 0.050
emb|CAO49098.1| unnamed protein product [Vitis vinifera] 42 0.051
gb|EDU41877.1| postreplication repair E3 ubiquitin-protein ... 42 0.052
emb|CAG10910.1| unnamed protein product [Tetraodon nigrovir... 42 0.054
ref|NP_001098810.1| TNF receptor-associated factor 5 [Bos t... 42 0.056
ref|XP_001014568.1| hypothetical protein TTHERM_00043750 [T... 42 0.059
ref|XP_001873461.1| predicted protein [Laccaria bicolor S23... 42 0.061
ref|NP_505917.2| C55A6.1 [Caenorhabditis elegans] >gi|58081... 42 0.063
ref|NP_986450.1| AGL217Wp [Ashbya gossypii ATCC 10895] >gi|... 42 0.063
gb|AAH20845.1| RFWD2 protein [Homo sapiens] 42 0.064
ref|XP_001420760.1| predicted protein [Ostreococcus lucimar... 41 0.065
ref|XP_001615039.1| hypothetical protein PVX_089745 [Plasmo... 41 0.066
emb|CAQ13714.1| novel protein [Danio rerio] 41 0.068
ref|XP_696313.2| PREDICTED: similar to LON peptidase N-term... 41 0.070
gb|EDU46239.1| peroxisome assembly protein 12 [Pyrenophora ... 41 0.071
ref|ZP_00374273.1| ZNRF3 protein [Wolbachia endosymbiont of... 41 0.074
gb|ACO68600.1| E3 ubiquitin-protein ligase COP1 [Micromonas... 41 0.074
ref|XP_001104796.1| PREDICTED: similar to ring finger and W... 41 0.082
ref|NP_071902.2| ring finger and WD repeat domain 2 isoform... 41 0.083
ref|XP_001434306.1| hypothetical protein GSPATT00036040001 ... 41 0.084
ref|XP_001904769.1| unnamed protein product [Podospora anse... 41 0.086
ref|NP_001001740.1| ring finger and WD repeat domain 2 isof... 41 0.086
ref|NP_001101725.1| hypothetical protein LOC317486 [Rattus ... 41 0.086
ref|XP_001104719.1| PREDICTED: similar to ring finger and W... 41 0.087
ref|NP_001039926.1| tripartite motif-containing 6 and tripa... 41 0.088
ref|XP_001438086.1| hypothetical protein GSPATT00007824001 ... 41 0.088
ref|XP_001060464.1| PREDICTED: similar to polycomb group ri... 41 0.089
ref|XP_001153038.1| PREDICTED: ring finger and WD repeat do... 41 0.090
ref|NP_001088373.1| hypothetical protein LOC495222 [Xenopus... 41 0.091
ref|XP_646455.1| hypothetical protein DDBDRAFT_0190725 [Dic... 41 0.091
ref|XP_001345325.1| PREDICTED: similar to bloodthirsty [Dan... 41 0.093
ref|NP_523726.2| Suppressor of zeste 2 CG3905-PA [Drosophil... 41 0.095
emb|CAA40135.1| supressor two of zeste [Drosophila melanoga... 41 0.095
emb|CAA40134.1| suppressor two of zeste [Drosophila melanog... 41 0.095
ref|XP_692341.2| PREDICTED: hypothetical protein [Danio rerio] 41 0.095
gb|EAW90999.1| ring finger and WD repeat domain 2, isoform ... 41 0.097
ref|NP_001082838.1| hypothetical protein LOC555238 [Danio r... 41 0.098
dbj|BAB22061.1| unnamed protein product [Mus musculus] 41 0.098
gb|AAX12162.1| bloodthirsty [Chaenocephalus aceratus] 41 0.098
ref|XP_415709.2| PREDICTED: similar to Tripartite motif pro... 41 0.099
ref|XP_001493775.1| PREDICTED: similar to PCGF5 protein [Eq... 41 0.099
ref|XP_755380.1| ATP-dependent protease (CrgA) [Aspergillus... 41 0.10
ref|XP_001211184.1| predicted protein [Aspergillus terreus ... 41 0.10
ref|XP_001453731.1| hypothetical protein GSPATT00020015001 ... 41 0.10
ref|XP_001010127.2| zinc finger protein, putative [Tetrahym... 41 0.10
ref|XP_001470615.1| hypothetical protein TTHERM_00649009 [T... 41 0.10
gb|EDL41769.1| polycomb group ring finger 5, isoform CRA_b ... 41 0.10
ref|XP_001080543.1| PREDICTED: similar to polycomb group ri... 41 0.11
ref|XP_537181.2| PREDICTED: similar to constitutive photomo... 41 0.11
ref|NP_001038830.1| hypothetical protein LOC751646 [Danio r... 41 0.11
ref|NP_083784.1| polycomb group ring finger 5 [Mus musculus... 41 0.11
gb|AAG31173.1| COP1 [Ipomoea nil] 41 0.11
emb|CAK04915.1| novel protein similar to TNF receptor-assoc... 41 0.11
ref|XP_001169941.1| PREDICTED: TNF receptor-associated fact... 41 0.11
gb|AAK27808.1|AC022457_11 putative peroxin [Oryza sativa (j... 41 0.11
ref|XP_001415867.1| predicted protein [Ostreococcus lucimar... 41 0.11
gb|AAR87290.1| expressed protein [Oryza sativa (japonica cu... 41 0.12
gb|EAY91814.1| hypothetical protein OsI_013047 [Oryza sativ... 41 0.12
ref|XP_001108970.1| PREDICTED: similar to TNF receptor-asso... 41 0.12
gb|EAW93419.1| TNF receptor-associated factor 5, isoform CR... 41 0.12
dbj|BAB24708.1| unnamed protein product [Mus musculus] >gi|... 41 0.12
ref|XP_001699170.1| hypothetical protein CHLREDRAFT_177885 ... 41 0.12
ref|XP_001771245.1| predicted protein [Physcomitrella paten... 41 0.12
ref|XP_001169985.1| PREDICTED: TNF receptor-associated fact... 41 0.12
ref|NP_001096726.1| ring finger and WD repeat domain 2 [Bos... 41 0.12
gb|EDM09451.1| similar to constitutive photomorphogenic pro... 41 0.12
ref|XP_001169919.1| PREDICTED: TNF receptor-associated fact... 41 0.12
ref|XP_521559.2| PREDICTED: polycomb group ring finger 5 is... 41 0.12
ref|XP_426628.2| PREDICTED: similar to constitutive photomo... 41 0.13
gb|ABS58625.1| NRAG7 protein [Aplysia californica] 41 0.13
ref|NP_036061.1| ring finger and WD repeat domain 2 [Mus mu... 41 0.13
ref|NP_004610.1| TNF receptor-associated factor 5 [Homo sap... 41 0.13
ref|XP_993328.1| PREDICTED: similar to constitutive photomo... 41 0.13
ref|XP_001438795.1| hypothetical protein GSPATT00007944001 ... 41 0.13
emb|CAN82106.1| hypothetical protein [Vitis vinifera] 41 0.13
gb|EDL95013.1| rCG20229 [Rattus norvegicus] 41 0.13
emb|CAO70651.1| unnamed protein product [Vitis vinifera] 41 0.13
ref|NP_613222.1| inhibitor of apoptosis-3 IAP-3 [Mamestra c... 41 0.13
emb|CAO39787.1| unnamed protein product [Vitis vinifera] 41 0.13
ref|YP_053107.1| ubiquitin E3 ligase ICP0 [Equid herpesviru... 41 0.13
dbj|BAD27395.1| transactivator protein [Equid herpesvirus 1] 41 0.13
gb|AAB63316.1| contains a deletion of 399 base pairs as com... 41 0.13
dbj|BAD91106.1| transcriptional activator [Equid herpesviru... 41 0.13
dbj|BAD91102.1| transcriptional activator [Equid herpesviru... 41 0.13
dbj|BAD91104.1| transcriptional activator [Equid herpesviru... 41 0.13
dbj|BAD91098.1| transcriptional activator [Equid herpesviru... 41 0.13
dbj|BAD91096.1| transcriptional activator [Equid herpesviru... 41 0.13
gb|AAI58003.1| Ring finger and WD repeat domain 2 [Mus musc... 41 0.13
ref|XP_001676713.1| Hypothetical protein CBG14665 [Caenorha... 41 0.13
gb|EAZ16374.1| hypothetical protein OsJ_030583 [Oryza sativ... 41 0.13
ref|XP_001766701.1| predicted protein [Physcomitrella paten... 41 0.13
ref|XP_001418743.1| predicted protein [Ostreococcus lucimar... 41 0.14
ref|XP_001479473.1| PREDICTED: similar to constitutive phot... 41 0.14
gb|AAC51329.1| TNF receptor associated factor 5 [Homo sapiens] 41 0.14
gb|AAC98912.1| COP1 homolog [Lycopersicon esculentum] 41 0.14
ref|XP_001251503.1| PREDICTED: hypothetical protein LOC5289... 41 0.14
ref|XP_001367374.1| PREDICTED: similar to PCGF5 protein [Mo... 41 0.14
gb|AAY51544.1| IP01427p [Drosophila melanogaster] 41 0.14
ref|XP_657287.2| zinc finger protein, putative [Entamoeba h... 41 0.14
ref|XP_001765415.1| predicted protein [Physcomitrella paten... 41 0.14
ref|XP_001752205.1| SNF2 family DNA-dependent ATPase [Physc... 41 0.14
ref|NP_045280.1| ubiquitin E3 ligase ICP0 [Equid herpesviru... 41 0.14
ref|XP_001496466.1| PREDICTED: similar to PCGF5 protein [Eq... 41 0.14
ref|NP_057355.2| ring finger protein 138 isoform 1 [Homo sa... 40 0.14
gb|AAD46623.2|AF162680_1 HSD-4 protein [Homo sapiens] 40 0.14
gb|ABX44698.1| hypothetical protein [Monodon baculovirus] 40 0.14
emb|CAL53964.1| putative formamidopyrimidine-DNA glycosylas... 40 0.15
ref|XP_001611743.1| conserved hypothetical protein [Babesia... 40 0.15
ref|NP_001071448.1| polycomb group ring finger 5 [Bos tauru... 40 0.15
gb|AAP36534.1| Homo sapiens STRIN protein [synthetic constr... 40 0.15
>ref|NP_012325.1| RING-finger peroxin, peroxisomal membrane protein with a C-terminal
zinc-binding RING domain, forms translocation subcomplex
with Pex10p and Pex12p which functions in peroxisomal
matrix protein import; Pex2p [Saccharomyces cerevisiae]
sp|P32800|PEX2_YEAST Peroxisomal biogenesis factor 2 (Peroxin-2) (Peroxisomal protein
PAS5) (Protein CRT1)
gb|AAB36836.1| pas5 [Saccharomyces cerevisiae]
emb|CAA84000.1| ORF [Saccharomyces cerevisiae]
emb|CAA89508.1| PAS5 [Saccharomyces cerevisiae]
gb|EDN63181.1| peroxin [Saccharomyces cerevisiae YJM789]
Length = 271
Score = 381 bits (979), Expect = e-104, Method: Composition-based stats.
Identities = 271/271 (100%), Positives = 271/271 (100%)
Query: 1 MSRVAQLDSIALDKELYGQFWSEFNAAFNTSEHKEEWELALNTVVFMCATRFLPHYGSSC 60
MSRVAQLDSIALDKELYGQFWSEFNAAFNTSEHKEEWELALNTVVFMCATRFLPHYGSSC
Sbjct: 1 MSRVAQLDSIALDKELYGQFWSEFNAAFNTSEHKEEWELALNTVVFMCATRFLPHYGSSC 60
Query: 61 TYGSALSGVVFQCRKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMMWLKLYKWVNLLYH 120
TYGSALSGVVFQCRKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMMWLKLYKWVNLLYH
Sbjct: 61 TYGSALSGVVFQCRKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMMWLKLYKWVNLLYH 120
Query: 121 GCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQN 180
GCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQN
Sbjct: 121 GCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQN 180
Query: 181 RQLLWNALLELFSNTLLTKRGLLTFVKKPPRSRSTTTYKTVCPRCGGFPTNPYQIACCRA 240
RQLLWNALLELFSNTLLTKRGLLTFVKKPPRSRSTTTYKTVCPRCGGFPTNPYQIACCRA
Sbjct: 181 RQLLWNALLELFSNTLLTKRGLLTFVKKPPRSRSTTTYKTVCPRCGGFPTNPYQIACCRA 240
Query: 241 NYCYVCVVKALEWSMCDACGSSGRLTASPVY 271
NYCYVCVVKALEWSMCDACGSSGRLTASPVY
Sbjct: 241 NYCYVCVVKALEWSMCDACGSSGRLTASPVY 271
>dbj|BAE27238.1| unnamed protein product [Mus musculus]
Length = 305
Score = 308 bits (789), Expect = 3e-82, Method: Composition-based stats.
Identities = 61/287 (21%), Positives = 109/287 (37%), Gaps = 45/287 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ LDK L WS+F F+ + +E + +++ RF Y +
Sbjct: 16 RISQLDALELDKALEQLVWSQFTQCFHGFKPGLLARFEPEVKAFLWLFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++ ++ Y V + G ++ + +F H +
Sbjct: 75 TVGQSVLNIQYKNDSSLNLIYQPPSKTQKLWYAVCTIGGKWLEERCYDLFRNRHLASFGK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ ++ L ++ NFL FL F + R +HS
Sbjct: 135 AKQFMNFLVGLLKLGELINFLIFL-----QKGKFATLTERLLGIHSVFCKP--------- 180
Query: 168 YSNSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRGL--------LTFVKKPPRSRSTTT 217
N G EY NR+LLW+ E +F L+ + L + + +
Sbjct: 181 -QNMREVGFEYMNRELLWHGFAEFLIFLLPLINIQKLKAKLSSWCIPLTGAAGHDSTLGS 239
Query: 218 YKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
C CG +PT P+ I C +CY CV + + + C CG+
Sbjct: 240 SGKECALCGEWPTMPHTIGCEHV-FCYYCVKSSFLFDIYFTCPKCGT 285
>gb|EDL05216.1| peroxisomal membrane protein 3, isoform CRA_b [Mus musculus]
Length = 307
Score = 307 bits (787), Expect = 6e-82, Method: Composition-based stats.
Identities = 60/287 (20%), Positives = 109/287 (37%), Gaps = 45/287 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 18 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKAFLWLFLWRFTI-YSKNA 76
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++ ++ Y V + G ++ + +F H +
Sbjct: 77 TVGQSVLNIQYKNDSSLNLIYQPPSKTQKLWYAVCTIGGKWLEERCYDLFRNRHLASFGK 136
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ ++ L ++ NFL FL F + R +HS
Sbjct: 137 AKQFMNFLVGLLKLGELINFLIFL-----QKGKFATLTERLLGIHSVFCKP--------- 182
Query: 168 YSNSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRGL--------LTFVKKPPRSRSTTT 217
N G EY NR+LLW+ E +F L+ + L + + +
Sbjct: 183 -QNMREVGFEYMNRELLWHGFAEFLIFLLPLINIQKLKAKLSSWCIPLTGAAGHDSTLGS 241
Query: 218 YKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
C CG +PT P+ I C +CY CV + + + C CG+
Sbjct: 242 SGKECALCGEWPTMPHTIGCEHV-FCYYCVKSSFLFDIYFTCPKCGT 287
>sp|P24392|PEX2_RAT Peroxisome assembly factor 1 (PAF-1) (Peroxin-2) (Peroxisomal
membrane protein 3)
emb|CAA41054.1| peroxisome assembly factor-1 [Rattus rattus]
dbj|BAA06306.1| peroxisome assembly factor-1 [Rattus norvegicus]
gb|AAH63169.1| Peroxisomal membrane protein 3 [Rattus norvegicus]
gb|EDM01038.1| peroxisomal membrane protein 3, isoform CRA_a [Rattus norvegicus]
gb|EDM01039.1| peroxisomal membrane protein 3, isoform CRA_a [Rattus norvegicus]
gb|EDM01040.1| peroxisomal membrane protein 3, isoform CRA_a [Rattus norvegicus]
prf||1706355A peroxisome assembly factor 1
Length = 305
Score = 307 bits (786), Expect = 8e-82, Method: Composition-based stats.
Identities = 62/287 (21%), Positives = 109/287 (37%), Gaps = 45/287 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKAFLWLFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++ ++ LY V + G ++ + +F H +
Sbjct: 75 TVGQSVLNIQYKNDSSPNPVYQPPSKNQKLLYAVCTIGGRWLEERCYDLFRNRHLASFGK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ +V L ++ NFL FL F + R +HS
Sbjct: 135 AKQCMNFVVGLLKLGELMNFLIFL-----QKGKFATLTERLLGIHSVFCKP--------- 180
Query: 168 YSNSVFAGLEYQNRQLLWNALLEL--FSNTLLTKRGL--------LTFVKKPPRSRSTTT 217
+ G EY NR+LLW+ E F L+ + L + + +
Sbjct: 181 -QSMREVGFEYMNRELLWHGFAEFLVFLLPLINIQKLKAKLSSWCIPLTSTAGSDSTLGS 239
Query: 218 YKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
C CG +PT P+ I C +CY CV + + M C CG+
Sbjct: 240 SGKECALCGEWPTMPHTIGCEHV-FCYYCVKSSFLFDMYFTCPKCGT 285
>ref|XP_001490672.1| PREDICTED: similar to Peroxisome assembly factor 1 (PAF-1)
(Peroxin-2) (Peroxisomal membrane protein 3) (35 kDa
peroxisomal membrane protein) (RING finger protein 72)
[Equus caballus]
Length = 305
Score = 306 bits (785), Expect = 9e-82, Method: Composition-based stats.
Identities = 62/287 (21%), Positives = 109/287 (37%), Gaps = 45/287 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKAFLWLFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++ ++ Y V + G ++ + +F PH +
Sbjct: 75 TVGQSVLNIQYKNDFSPNPRYQPPSRNQKLWYAVCTIGGKWLEERCYDLFRNPHLASFRK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ +V + + NFL FL F + R + S
Sbjct: 135 AKQCVNFVVGILKLGGLINFLIFL-----QRGKFATLTERLLGI--------RSVFCKP- 180
Query: 168 YSNSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRGL--------LTFVKKPPRSRSTTT 217
N G EY NR++LW+ E +F L+ + L + P + T
Sbjct: 181 -QNIREVGFEYMNREILWHGFAEFLIFLLPLINIQKLKAKLSSWCIPLTGAPNGDSTLAT 239
Query: 218 YKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
C CG +PT P+ I C +CY CV + + M C CG+
Sbjct: 240 SGRQCSLCGEWPTMPHTIGC-EHIFCYYCVKSSFLYDMYFTCPKCGT 285
>ref|NP_033020.2| peroxin 2 [Mus musculus]
gb|AAB91465.1| peroxisome membrane protein PEX2 [Mus musculus]
gb|AAH12404.1| Peroxisomal membrane protein 3 [Mus musculus]
dbj|BAE30130.1| unnamed protein product [Mus musculus]
dbj|BAE31130.1| unnamed protein product [Mus musculus]
gb|EDL05215.1| peroxisomal membrane protein 3, isoform CRA_a [Mus musculus]
Length = 305
Score = 305 bits (783), Expect = 1e-81, Method: Composition-based stats.
Identities = 60/287 (20%), Positives = 109/287 (37%), Gaps = 45/287 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKAFLWLFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++ ++ Y V + G ++ + +F H +
Sbjct: 75 TVGQSVLNIQYKNDSSLNLIYQPPSKTQKLWYAVCTIGGKWLEERCYDLFRNRHLASFGK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ ++ L ++ NFL FL F + R +HS
Sbjct: 135 AKQFMNFLVGLLKLGELINFLIFL-----QKGKFATLTERLLGIHSVFCKP--------- 180
Query: 168 YSNSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRGL--------LTFVKKPPRSRSTTT 217
N G EY NR+LLW+ E +F L+ + L + + +
Sbjct: 181 -QNMREVGFEYMNRELLWHGFAEFLIFLLPLINIQKLKAKLSSWCIPLTGAAGHDSTLGS 239
Query: 218 YKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
C CG +PT P+ I C +CY CV + + + C CG+
Sbjct: 240 SGKECALCGEWPTMPHTIGCEHV-FCYYCVKSSFLFDIYFTCPKCGT 285
>ref|NP_001093818.1| peroxin 2 [Bos taurus]
gb|AAI48002.1| LOC512677 protein [Bos taurus]
Length = 305
Score = 305 bits (782), Expect = 2e-81, Method: Composition-based stats.
Identities = 63/287 (21%), Positives = 109/287 (37%), Gaps = 45/287 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKAFLWLFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + +Q ++ Y V + G ++ + +F H +
Sbjct: 75 TVGQSVLNIQYQNDLSPNLSYQPPSRNQKLWYAVCTIGGKWLEERCYDLFRNRHIASFRK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ V L + NFL FL F + R +HS
Sbjct: 135 AKQCMNLVVGLLKLGGLINFLIFL-----QRGKFATLTERLLGIHSVFHKP--------- 180
Query: 168 YSNSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRGL--------LTFVKKPPRSRSTTT 217
+ G EY NR+LLW+ E +F L+ + L + P + + T
Sbjct: 181 -QSVREVGFEYMNRELLWHGFAEFLIFLLPLINVQKLRAKLSSWCVPLTGAPGSNSTLAT 239
Query: 218 YKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
C CG +PT P+ + C +CY CV + + M C CG+
Sbjct: 240 SGRQCSLCGEWPTMPHTVGCEHV-FCYYCVKSSFLFDMSFTCPKCGT 285
>ref|NP_058930.1| peroxin 2 [Rattus norvegicus]
dbj|BAA06307.1| peroxisome assembly factor-1 [Rattus norvegicus]
Length = 305
Score = 304 bits (780), Expect = 3e-81, Method: Composition-based stats.
Identities = 62/287 (21%), Positives = 109/287 (37%), Gaps = 45/287 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKAFLWLFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++ ++ LY V + G ++ + +F H +
Sbjct: 75 TVGQSVLNIQYKNDSSPNPVYQPPSKNQKLLYAVCTIGGRWLEERCYDLFPNRHLASFGK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ +V L ++ NFL FL F + R +HS
Sbjct: 135 AKQCMNFVVGLLKLGELMNFLIFL-----QKGKFATLTERLLGIHSVFCKP--------- 180
Query: 168 YSNSVFAGLEYQNRQLLWNALLEL--FSNTLLTKRGL--------LTFVKKPPRSRSTTT 217
+ G EY NR+LLW+ E F L+ + L + + +
Sbjct: 181 -QSMREVGFEYMNRELLWHGFAEFLVFLLPLINIQKLKAKLSSWCIPLTSTAGSDSTLGS 239
Query: 218 YKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
C CG +PT P+ I C +CY CV + + M C CG+
Sbjct: 240 SGKECALCGEWPTMPHTIGCEHV-FCYYCVKSSFLFDMYFTCPKCGT 285
>sp|P55098|PEX2_MOUSE Peroxisome assembly factor 1 (PAF-1) (Peroxin-2) (Peroxisomal
membrane protein 3)
gb|AAA21742.1| peroxisome assembly factor-1
Length = 305
Score = 303 bits (776), Expect = 9e-81, Method: Composition-based stats.
Identities = 62/287 (21%), Positives = 108/287 (37%), Gaps = 45/287 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKAFLWLFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + + ++ LY V + G ++ + +F H +
Sbjct: 75 TVGQSVLNIQHKNDSSPNPVYQPPSKNQKLLYAVCTIGGRWLEERCYDLFRNRHLASFGK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ +V L ++ NFL FL F + R +HS
Sbjct: 135 AKQCMNFVVGLLKLGELMNFLIFL-----QKGKFATLTERLLGIHSVFCKP--------- 180
Query: 168 YSNSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRGLLTF--------VKKPPRSRSTTT 217
N G EY NR+LLW+ E +F L+ + L + +
Sbjct: 181 -QNMREVGFEYMNRELLWHGFAEFLIFLLPLINIQKLKAKLSSWCTLCTGAAGHDSTLGS 239
Query: 218 YKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
C CG +PT P+ I C +CY CV + + + C CG+
Sbjct: 240 SGKECALCGEWPTMPHTIGCEHV-FCYYCVKSSFLFDIYFTCPKCGT 285
>ref|NP_000309.1| peroxin 2 [Homo sapiens]
ref|NP_001073336.1| peroxin 2 [Homo sapiens]
sp|P28328|PEX2_HUMAN Peroxisome assembly factor 1 (PAF-1) (Peroxin-2) (Peroxisomal
membrane protein 3) (35 kDa peroxisomal membrane
protein) (RING finger protein 72)
gb|AAF97687.1|AF133826_1 35 kDa peroxisomal membrane protein [Homo sapiens]
gb|AAC12785.1| peroxisome assembly factor-1 [Homo sapiens]
gb|AAA60141.1| peroxisomal membrane protein
gb|AAH05375.1| Peroxisomal membrane protein 3, 35kDa (Zellweger syndrome) [Homo
sapiens]
gb|AAH93043.1| Peroxisomal membrane protein 3, 35kDa (Zellweger syndrome) [Homo
sapiens]
Length = 305
Score = 303 bits (776), Expect = 1e-80, Method: Composition-based stats.
Identities = 62/287 (21%), Positives = 108/287 (37%), Gaps = 45/287 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKACLWVFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++ ++ Y V + G ++ + +F H +
Sbjct: 75 TVGQSVLNIKYKNDFSPNLRYQPPSKNQKIWYAVCTIGGRWLEERCYDLFRNHHLASFGK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ +V L + NFL FL F + R +HS
Sbjct: 135 VKQCVNFVIGLLKLGGLINFLIFL-----QRGKFATLTERLLGIHSVFCKP--------- 180
Query: 168 YSNSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRGL--------LTFVKKPPRSRSTTT 217
N G EY NR+LLW+ E +F L+ + L + P + T
Sbjct: 181 -QNIREVGFEYMNRELLWHGFAEFLIFLLPLINVQKLKAKLSSWCIPLTGAPNSDNTLAT 239
Query: 218 YKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
C CG +PT P+ I C +CY C + + + C CG+
Sbjct: 240 SGKECALCGEWPTMPHTIGC-EHIFCYFCAKSSFLFDVYFTCPKCGT 285
>gb|ABZ92521.1| peroxisomal membrane protein 3, 35kDa (Zellweger syndrome)
[synthetic construct]
Length = 305
Score = 303 bits (776), Expect = 1e-80, Method: Composition-based stats.
Identities = 62/287 (21%), Positives = 108/287 (37%), Gaps = 45/287 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKACLWVFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++ ++ Y V + G ++ + +F H +
Sbjct: 75 TVGQSVLNIKYKNDFSPNLRYQPPSKNQKIWYAVCTIGGRWLEERCYDLFRNHHLASFGK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ +V L + NFL FL F + R +HS
Sbjct: 135 VKQCVNFVIGLLKLGGLINFLIFL-----QRGKFATLTERLLGIHSVFCKP--------- 180
Query: 168 YSNSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRGL--------LTFVKKPPRSRSTTT 217
N G EY NR+LLW+ E +F L+ + L + P + T
Sbjct: 181 -QNIREVGFEYMNRELLWHGFAEFLIFLLPLINVQKLKAKLSSWCIPLTGAPNSDNTLAT 239
Query: 218 YKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
C CG +PT P+ I C +CY C + + + C CG+
Sbjct: 240 SGKECALCGEWPTMPHTIGC-EHIFCYFCAKSSFLFDVYFTCPKCGT 285
>ref|XP_544136.2| PREDICTED: similar to Peroxisome assembly factor-1 (PAF-1)
(Peroxin-2) (Peroxisomal membrane protein 3) (35 kDa
peroxisomal membrane protein) (RING finger protein 72)
[Canis familiaris]
Length = 305
Score = 301 bits (772), Expect = 3e-80, Method: Composition-based stats.
Identities = 61/287 (21%), Positives = 108/287 (37%), Gaps = 45/287 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L W++F F+ + +E + ++++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWAQFTQCFHGFKPGLLAHFEPEVKALLWLFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++ ++ Y V + G ++ + +F H +
Sbjct: 75 TVGQSVLNIQYKNDFSPKLRYQPPSKNQKLWYAVCTIGGTWLEERCYDLFRNRHLASFGK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ + L + NFL FL F + R + S
Sbjct: 135 ARQCVNIMVGLLKLGGLINFLIFL-----QRGKFATLTERLLGI--------RSVFCKP- 180
Query: 168 YSNSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRGL--------LTFVKKPPRSRSTTT 217
N G EY NR+LLW+ E +F L+ + L + P + T
Sbjct: 181 -QNVREVGFEYMNRELLWHGFAEFLIFLLPLINIQKLKAKLSSWCIPLTGAPTSDNTLAT 239
Query: 218 YKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
C CG +PT P+ I C +CY CV + + M C CG+
Sbjct: 240 SGKQCSLCGEWPTMPHTIGC-EHIFCYYCVKSSFLFDMYFTCPKCGT 285
>gb|EAW87052.1| peroxisomal membrane protein 3, 35kDa (Zellweger syndrome) [Homo
sapiens]
Length = 305
Score = 300 bits (770), Expect = 6e-80, Method: Composition-based stats.
Identities = 62/287 (21%), Positives = 108/287 (37%), Gaps = 45/287 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKACLWVFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++ ++ Y V + G ++ + +F H +
Sbjct: 75 TVGQSVLNIKYKNDFSPNLRYQPPSKNQKIWYAVCTIGGRWLEERCYDLFRNHHLASFGK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ +V L + NFL FL F + R +HS
Sbjct: 135 VKQCVNFVIGLLKLGGLINFLIFL-----QRGKFATLTERLLGIHSVFCKP--------- 180
Query: 168 YSNSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRGL--------LTFVKKPPRSRSTTT 217
N G EY NR+LLW+ E +F L+ + L + P + T
Sbjct: 181 -QNICEVGFEYMNRELLWHGFAEFLIFLLPLINVQKLKAKLSSWCIPLTGAPNSDNTLAT 239
Query: 218 YKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
C CG +PT P+ I C +CY C + + + C CG+
Sbjct: 240 SGKECALCGEWPTMPHTIGC-EHIFCYFCAKSSFLFDVYFTCPKCGT 285
>gb|AAH00661.1| Peroxisomal membrane protein 3, 35kDa (Zellweger syndrome) [Homo
sapiens]
Length = 305
Score = 299 bits (766), Expect = 2e-79, Method: Composition-based stats.
Identities = 62/287 (21%), Positives = 107/287 (37%), Gaps = 45/287 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKACLWVFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++ ++ Y V + G ++ + +F H +
Sbjct: 75 TVGQSVLNIKYKNDFSPNLRYQPPSKNQKIWYAVCTIGGRWLEERCYDLFRNHHLASFGK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ +V L + NFL FL F + R +HS
Sbjct: 135 VKQCVNFVIGLLKLGGLINFLIFL-----QRGKFATLTERLLGIHSVFCKP--------- 180
Query: 168 YSNSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRGL--------LTFVKKPPRSRSTTT 217
N G EY NR+LLW+ E +F L+ + L + P + T
Sbjct: 181 -QNIREVGFEYMNRELLWHGFAEFLIFLLPLINVQKLKAKLSSWCIPLTGAPNSDNTLAT 239
Query: 218 YKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
C CG PT P+ I C +CY C + + + C CG+
Sbjct: 240 SGKECALCGERPTMPHTIGC-EHIFCYFCAKSSFLFDVYFTCPKCGT 285
>ref|NP_982853.1| ABL094Wp [Ashbya gossypii ATCC 10895]
gb|AAS50677.1| ABL094Wp [Ashbya gossypii ATCC 10895]
Length = 257
Score = 293 bits (751), Expect = 8e-78, Method: Composition-based stats.
Identities = 107/271 (39%), Positives = 154/271 (56%), Gaps = 21/271 (7%)
Query: 1 MSRVAQLDSIALDKELYGQFWSEFNAAFNTSEHKEEWELALNTVVFMCATRFLPHYGSSC 60
MSRVAQLDS+ALD EL+ WSEF + F ++ +EW+L L+T+++ +T
Sbjct: 1 MSRVAQLDSLALDSELHQGIWSEFQSQFKPVKYIDEWQLLLHTLIYHFSTH--TSVAGVS 58
Query: 61 TYGSALSGVVFQCRKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMMWLKLYKWVNLLYH 120
TYGS LSGV ++ K TL++VTVL Y+ KK++ ++ + + KLY+ YH
Sbjct: 59 TYGSQLSGVTYRTSKSTLFLVTVLVRYIHKKLSTLLVR------REGYAKLYRVAAKWYH 112
Query: 121 GCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQN 180
D+ NFL FLA FLSP++R F + R + D FY ++V++GLE+QN
Sbjct: 113 CYDLANFLSFLAR-----PLFLSPIHRLFGIRCVRALDD-----PNFYLSTVYSGLEFQN 162
Query: 181 RQLLWNALLELFSNTLLTKRGLLTFVKKPPRSRSTTTYKTVCPRCGGFPTNPYQIACCRA 240
RQL+WNALLEL + F K+ + T C +C P NPY +CC A
Sbjct: 163 RQLMWNALLELLNANFFNSHF---FSKRSLVKNARPTGPEECAKCRDVPNNPYSTSCCGA 219
Query: 241 NYCYVCVVKALEWSMCDACGSSGRLTASPVY 271
YCYVCV+ +L+ C+ CG+ G +A P+Y
Sbjct: 220 TYCYVCVLISLDIKFCNNCGNRGDFSAIPLY 250
>sp|Q06438|PEX2_CRIGR Peroxisome assembly factor 1 (PAF-1) (Peroxin-2) (Peroxisomal
membrane protein 3)
emb|CAA78929.1| peroxisome assembly factor 1 [Cricetulus griseus]
dbj|BAA06308.1| peroxisome assembly factor-1 [Cricetulus griseus]
Length = 304
Score = 292 bits (748), Expect = 2e-77, Method: Composition-based stats.
Identities = 59/286 (20%), Positives = 106/286 (37%), Gaps = 45/286 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 15 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKACLWLFLWRFTI-YSKNA 73
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++ ++ Y V + G ++ + +F H +
Sbjct: 74 TVGQSVLNIQYKNDFSSNSRYQPPSKNQKLWYAVCTIGGRWLEERCYDLFRNRHLASFGK 133
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ + L ++ NFL FL F + R +HS
Sbjct: 134 VKQCMNVMVGLLKLGELINFLIFL-----QKGKFATLTERLLGIHSVFCKP--------- 179
Query: 168 YSNSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRGL--------LTFVKKPPRSRSTTT 217
N G +Y NR+LLW+ E +F L+ + + + +
Sbjct: 180 -QNIREVGFDYMNRELLWHGFAEFLIFLLPLINIQKFKAKLSSWCIPLTGAASSDSALAS 238
Query: 218 YKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACG 260
C CG +PT P+ I C +CY CV + + M C CG
Sbjct: 239 SGKECALCGEWPTMPHTIGCEHV-FCYYCVKSSFLFDMYFTCPKCG 283
>ref|XP_001377812.1| PREDICTED: similar to Peroxisome assembly factor 1 (PAF-1)
(Peroxin-2) (Peroxisomal membrane protein 3) (35 kDa
peroxisomal membrane protein) (RING finger protein 72)
[Monodelphis domestica]
Length = 305
Score = 291 bits (745), Expect = 4e-77, Method: Composition-based stats.
Identities = 62/287 (21%), Positives = 108/287 (37%), Gaps = 45/287 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTHCFHGFKPGLLARLEPEVKAFLWLFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQCR-------------KRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++ ++ Y + + G ++ + +F H +
Sbjct: 75 TVGQSIMNIQYKNNYSQTQKYQPLSKNQKLWYAICTVGGRWLEERCYDLFRNHHLASFYK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ + L + NFL FL F + R + S
Sbjct: 135 IKQCTNLIVGLLKLSSLVNFLIFL-----QKGKFATLTERLLGIRSVFCKP--------- 180
Query: 168 YSNSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRGL--------LTFVKKPPRSRSTTT 217
N G EY NR+LLW+ E +F L+ + L + F P + T
Sbjct: 181 -QNIREVGFEYMNRELLWHGFAEFLIFLLPLINIQKLKAKLSSWCIPFTGVPNSDVTLAT 239
Query: 218 YKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
+ C CG +PT P+ I C +CY CV + + M C CG+
Sbjct: 240 HGKECSLCGEWPTMPHTIGCVHV-FCYYCVKSSYLFDMYFTCPKCGT 285
>ref|XP_447524.1| hypothetical protein CAGL0I06292g [Candida glabrata CBS138]
emb|CAG60461.1| unnamed protein product [Candida glabrata CBS 138]
Length = 258
Score = 282 bits (723), Expect = 2e-74, Method: Composition-based stats.
Identities = 110/262 (41%), Positives = 163/262 (62%), Gaps = 12/262 (4%)
Query: 1 MSRVAQLDSIALDKELYGQFWSEFNAAFNTSEHKEEWELALNTVVFMCATRFLPHYGSSC 60
MSRVAQLDS+ LD+E+ W+ F F S++ EE + L +VF+C ++ + +
Sbjct: 1 MSRVAQLDSVVLDQEVDHLIWNIFQKDFKVSKYAEECQFLLRCLVFICGSKSVDGVN-TT 59
Query: 61 TYGSALSGVVFQCRKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMMWLKLYKWVNLLYH 120
TYGS LSGV + CRKRTL+V +L Y+++K++++ F+ + + L+LY+W++ LY
Sbjct: 60 TYGSRLSGVYYLCRKRTLFVSNILIHYLYRKLSNLYFSSNNISERT--LRLYRWISTLYG 117
Query: 121 GCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQN 180
D+T FLRFL ++G +LS R + ++ + S FY ++V+AGLEYQN
Sbjct: 118 VLDLTTFLRFLLSDGNTK--YLSLTNRLLGIVTSVDMLSP----SSFYQDTVYAGLEYQN 171
Query: 181 RQLLWNALLELFSNTLLTKRGLLTFVKKPPRSRSTTTYKTVCPRCGGFPTNPYQIACCRA 240
RQLLWNALLE+F++TL+ L +K R +T CP C GFP NPY+ +CCRA
Sbjct: 172 RQLLWNALLEVFNSTLMNSNKYLWDTRK---KRDKPANETTCPECNGFPVNPYRSSCCRA 228
Query: 241 NYCYVCVVKALEWSMCDACGSS 262
NYCY+C +KAL C CG++
Sbjct: 229 NYCYICGMKALAREHCTNCGNT 250
>ref|XP_001646918.1| hypothetical protein Kpol_2000p24 [Vanderwaltozyma polyspora DSM
70294]
gb|EDO19060.1| hypothetical protein Kpol_2000p24 [Vanderwaltozyma polyspora DSM
70294]
Length = 264
Score = 279 bits (715), Expect = 1e-73, Method: Composition-based stats.
Identities = 109/273 (39%), Positives = 163/273 (59%), Gaps = 11/273 (4%)
Query: 1 MSRVAQLDSIALDKELYGQFWSEFNAAFNTSEHKEEWELALNTVVFMCATRFLPHYGSSC 60
MSRVA DS+ LD EL+ +W EF N ++ EWE LN+++F+ +T + +
Sbjct: 1 MSRVAVFDSLELDNELHDLYWREFKQNLNIRNNEHEWEFLLNSIIFLFST-YKKGNNLTT 59
Query: 61 TYGSAL-SGVVFQCRKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMMWLKLYKWVNLLY 119
TY L S +F K+TL+V+T+L Y+ KK+ H+I+N + L L W N +Y
Sbjct: 60 TYALELTSNNLFNATKKTLFVITILKNYINKKLQHLIYNN----SNESLLYLLHWFNKIY 115
Query: 120 HGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQ 179
D+ NFL+FL++ N+ F+SP++R NV TR + S S+FY N+V + L++Q
Sbjct: 116 SLLDLINFLKFLSSFN-NSHLFISPIHRLLNVPITRTNLESS---SDFYQNTVVSNLQFQ 171
Query: 180 NRQLLWNALLELFSNTLLTKRGLLTFVKKPPRSRSTT-TYKTVCPRCGGFPTNPYQIACC 238
NRQLLWN++LELF+ TLL L KP + ++ + T T+C RC FP+ PY+ CC
Sbjct: 172 NRQLLWNSILELFNMTLLNNSAWLQRKFKPMKLKNKSLTDSTICTRCDEFPSQPYRFQCC 231
Query: 239 RANYCYVCVVKALEWSMCDACGSSGRLTASPVY 271
++ YCY+C +K L+ S+C CG L A P+Y
Sbjct: 232 QSLYCYICTIKTLDLSICQNCGKDNNLKAVPLY 264
>ref|NP_001008454.1| peroxin 2 [Gallus gallus]
emb|CAG31179.1| hypothetical protein [Gallus gallus]
Length = 304
Score = 270 bits (691), Expect = 8e-71, Method: Composition-based stats.
Identities = 61/287 (21%), Positives = 107/287 (37%), Gaps = 45/287 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F + F+ + E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTSCFHGFKPGVLAHIEPEVKAFLWLLLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQCR-------------KRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G A+ + ++ ++ Y++ + G ++ + +F+ +
Sbjct: 75 TVGQAILNIQYKNNLSQTEKYQPLSKHQKLWYLIFTVGGRWLEERCYDLFSNRQLQSVSK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ L C + NFL FL F + R + S
Sbjct: 135 IKHYINFGAGLLKLCGLVNFLIFL-----QKGTFATLTERILGIRSVFCKP--------- 180
Query: 168 YSNSVFAGLEYQNRQLLWNALLELF--SNTLLTKRGLL--------TFVKKPPRSRSTTT 217
+ G EY NR+LLW+ E L+ + L P ++ T
Sbjct: 181 -QSVRQVGFEYMNRELLWHGFAEFLIYLLPLINVQKLKLKICSWCFPIANLPNSDKTLAT 239
Query: 218 YKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
+ VC CG +PT P+ I C +CY C+ + M C CGS
Sbjct: 240 HYKVCSLCGEWPTMPHTIGCSHV-FCYYCIKSNYLFDMYFTCPKCGS 285
>ref|XP_519817.2| PREDICTED: peroxisomal membrane protein 3 [Pan troglodytes]
Length = 326
Score = 268 bits (686), Expect = 3e-70, Method: Composition-based stats.
Identities = 53/266 (19%), Positives = 92/266 (34%), Gaps = 45/266 (16%)
Query: 24 FNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSCTYGSALSGVVFQC-------- 73
F F+ + +E + +++ RF Y + T G ++ + ++
Sbjct: 58 FTQCFHGFKPGLLARFEPEVKACLWVFLWRFTI-YSKNATVGQSVLNIKYKNDFSPNLRY 116
Query: 74 -----RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMMWLKLYKWVNLLYHGCDVTNFL 128
++ Y V + G ++ + +F + + +V L + NFL
Sbjct: 117 QPPSKNQKIWYAVCTIGGRWLEERCYDLFRNHQLASFGKVKQCVNFVIGLLKLGGLINFL 176
Query: 129 RFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQNRQLLWNAL 188
FL F + R +HS N G EY NR+LLW+
Sbjct: 177 IFL-----QRGKFATLTERLLGIHSVFCKP----------QNIREVGFEYMNRELLWHGF 221
Query: 189 LE--LFSNTLLTKRGL--------LTFVKKPPRSRSTTTYKTVCPRCGGFPTNPYQIACC 238
E +F L+ + L + P + T C CG +PT P+ I C
Sbjct: 222 AEFLIFLLPLINVQKLKAKLSSWCIPLTGAPNSDNTLATSGKECALCGEWPTMPHTIGC- 280
Query: 239 RANYCYVCVVKALEWSM---CDACGS 261
+CY C + + M C CG+
Sbjct: 281 EHIFCYFCAKSSFLFDMYFTCPKCGT 306
>ref|XP_001089931.1| PREDICTED: similar to Peroxisome assembly factor 1 (PAF-1)
(Peroxin-2) (Peroxisomal membrane protein 3) (35 kDa
peroxisomal membrane protein) (RING finger protein 72)
[Macaca mulatta]
Length = 253
Score = 237 bits (606), Expect = 5e-61, Method: Composition-based stats.
Identities = 58/274 (21%), Positives = 92/274 (33%), Gaps = 71/274 (25%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKACLWLFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQCRKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMMWLKLYKWVNLLYH 120
T G + + +V L
Sbjct: 75 TVG---------------------------------------PSFGKVKQCVNFVVGLLK 95
Query: 121 GCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQN 180
+ NFL FL F + R +HS N G EY N
Sbjct: 96 LGGLINFLIFL-----QRGKFATLTERLLGIHSVFCKP----------QNIREVGFEYMN 140
Query: 181 RQLLWNALLE--LFSNTLLTKRGL--------LTFVKKPPRSRSTTTYKTVCPRCGGFPT 230
R+LLW+ E +F L++ + L + P + T C CG +PT
Sbjct: 141 RELLWHGFAEFLIFLLPLISVQKLKAKLSSWCIPLTGAPNSDNTLATSGKECSLCGEWPT 200
Query: 231 NPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
P+ I C +CY C + + M C CG+
Sbjct: 201 MPHTIGC-EHIFCYFCAKSSFLFDMYFTCPKCGT 233
>ref|NP_001016841.1| peroxin 2 [Xenopus tropicalis]
emb|CAJ82611.1| peroxisomal membrane protein 3, 35kDa (Zellweger syndrome) [Xenopus
tropicalis]
gb|AAI21554.1| Peroxisomal membrane protein 3 [Xenopus tropicalis]
Length = 306
Score = 226 bits (578), Expect = 1e-57, Method: Composition-based stats.
Identities = 57/288 (19%), Positives = 103/288 (35%), Gaps = 46/288 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD+I L+K L WS+FN+ F + +E + + + R+ Y +
Sbjct: 16 RISQLDAIELNKALEQLIWSQFNSCFQGFKPGLLTRFEPEIKAFLCLFLWRYTI-YTKNA 74
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNG-PHCGNQM 106
T G A+ + ++ +++ + + ++ G ++ + +F+ P +
Sbjct: 75 TVGQAILNMQYKNDLEATKNYRPLNKQQKVWFALFMVGGKWLEERSFDLFSNHPFGASFQ 134
Query: 107 MWLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASE 166
++ L + NFL FL F + R + S
Sbjct: 135 RTKYFLNAISGLLKFGALLNFLIFL-----QQGKFATLTERLLGIRSVFSRP-------- 181
Query: 167 FYSNSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRGL--------LTFVKKPPRSRSTT 216
+ G EY NR++LW+ E +F L+ + L S
Sbjct: 182 --QDVRQVGFEYMNREILWHGFAEFLIFLLPLINTQKLKSKLFSWCKPAKGHSLSDPSLA 239
Query: 217 TYKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGS 261
C CG +P P+ I C +CY C+ M C C S
Sbjct: 240 VICKECCLCGEWPAMPHTIGCSHV-FCYYCIKSNYMADMYFTCPKCSS 286
>ref|XP_457905.1| hypothetical protein DEHA0C05720g [Debaryomyces hansenii CBS767]
emb|CAG85956.1| unnamed protein product [Debaryomyces hansenii CBS767]
Length = 445
Score = 215 bits (547), Expect = 4e-54, Method: Composition-based stats.
Identities = 72/337 (21%), Positives = 113/337 (33%), Gaps = 96/337 (28%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFN--------TSEHKEEWELALNTVVFMCATRFLP 54
RV+QLD+ LD EL + + F +H E W L LN +VF L
Sbjct: 10 RVSQLDANILDSELISLLKEQLTSIFQLHSTSWWTYDQHPELWSLLLNLMVFR-----LT 64
Query: 55 HYGSSCTYGSALSGV---------VFQCRKRTLYVVTVLAGYVWKKITHIIFN-----GP 100
+ S +YG+ L + + KRTL ++ Y + K+ +++
Sbjct: 65 VWRSGSSYGALLQNLKLTDFKKGKLIGYSKRTLLCAVLVGDYFYSKLQSYLYSIDESEAS 124
Query: 101 HCGNQMMWL------------KLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRA 148
+ L K+ +N + ++ NF FL + S +R
Sbjct: 125 RNASNFKLLNSIKSFFITHKTKILLGLNDCFKLLNLVNFTLFLVN-----GRYPSISHRL 179
Query: 149 FNVHSTRLIRDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFSNTLLTKR-------- 200
F + T ++ D N E+QNRQL+WN + E L +
Sbjct: 180 FGISLTPIVTDLLKF------NGNKVNFEFQNRQLVWNVMTEFLVFILPLMQLGKLKRMT 233
Query: 201 -GLLTFVKKPPRSRST-----TTYKTV----CPRCGG-------------------FPTN 231
+L+ KK R + T Y + C C TN
Sbjct: 234 KKILSPYKKGQRHETGDIPIFTPYTNLPVSQCAICHNNNDIAATSSNKNSSISSSCMVTN 293
Query: 232 PYQIACCRANYCYVCVVKAL--------EWSMCDACG 260
PY + C YCY+C+ + C CG
Sbjct: 294 PY-VTNCGHIYCYICIATKFNSLENTDSDSKGCLRCG 329
>ref|XP_001483143.1| hypothetical protein PGUG_05098 [Pichia guilliermondii ATCC 6260]
gb|EDK41000.1| hypothetical protein PGUG_05098 [Pichia guilliermondii ATCC 6260]
Length = 402
Score = 211 bits (537), Expect = 6e-53, Method: Composition-based stats.
Identities = 68/337 (20%), Positives = 113/337 (33%), Gaps = 96/337 (28%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNA------AFNTSEH-KEEWELALNTVVFMCATRFLPH 55
RV+QLD+ LD EL + ++ + T E E W L LN VVF L
Sbjct: 10 RVSQLDADILDSELVSLLKQQLSSISHLHRGWWTYELQPELWSLLLNLVVFR-----LTV 64
Query: 56 YGSSCTYGSALSGVV---------FQCRKRTLYVVTVLAGYVWKKITHIIFN---GPHCG 103
+ +YG L + KRT + ++ Y++ K +++
Sbjct: 65 WKKGTSYGLGLQNLQLSNFKNGKIIGYSKRTALLAVIIGDYLFTKFQSYLYSVDEADVAD 124
Query: 104 NQMMWLKLYKWVNLL---------------YHGCDVTNFLRFLAAEGPNARAFLSPLYRA 148
+ L+ V L ++ NF FL + + + ++R
Sbjct: 125 AEKSSFALFGTVKRLILTNRTKILTSVSSSLRVLNLVNFTLFLIS-----GRYSTLIHRV 179
Query: 149 FNVHSTRLIRDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFSNTL----------LT 198
+ T ++ D N E+QNRQL+WN + E L ++
Sbjct: 180 LGISLTPVVSDLLKF------NGSNVNFEFQNRQLVWNTMTEFLVFILPLLQLKKLRRMS 233
Query: 199 KRGLLTFVKKPPRSRSTTTYK--------TVCPRCGGF-------------------PTN 231
+ LL + KK +S+ T+ + C C TN
Sbjct: 234 SKMLLPYRKKAKKSQDEETFSSAYSNLPISQCAICHNNSEKRARSLGKTPSSLSSFPITN 293
Query: 232 PYQIACCRANYCYVCVVKAL--------EWSMCDACG 260
P+ + C YCY+C+ + C CG
Sbjct: 294 PH-VTNCGHIYCYICIATKFNAIENNDGDEEGCLRCG 329
>ref|XP_684073.1| PREDICTED: similar to Peroxisome assembly factor 1 (PAF-1)
(Peroxin-2) (Peroxisomal membrane protein 3) (35 kDa
peroxisomal membrane protein) (RING finger protein 72)
[Danio rerio]
ref|XP_001343742.1| PREDICTED: similar to Peroxisome assembly factor 1 (PAF-1)
(Peroxin-2) (Peroxisomal membrane protein 3) (35 kDa
peroxisomal membrane protein) (RING finger protein 72)
[Danio rerio]
Length = 321
Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats.
Identities = 61/287 (21%), Positives = 100/287 (34%), Gaps = 46/287 (16%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHKEE--WELALNTVVFMCATRFLPHYGSSC 60
R++QLD+ LD L WS+F F + E L ++ + RF Y +S
Sbjct: 32 RISQLDAFELDGALEQLVWSQFTQCFQHFKPGILTPVEPELKALLQLLLWRFTI-YSNSA 90
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPHC-GNQM 106
T G +L + ++ ++ + + + +++ +H +F N
Sbjct: 91 TVGQSLLNIRYKNALIPGQKYRPMSRPQKFWFALLTVGEKWFRERSHSLFLNHPAESNAR 150
Query: 107 MWLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASE 166
K+ + L + NFL FL F + R V +
Sbjct: 151 KARKVLSILLGLTKAASLVNFLLFL-----QRGTFPTLTERLLGVQ--------PVFSRP 197
Query: 167 FYSNSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRGLL--------TFVKKPPRSRSTT 216
+Y NR+LLW+ E +F L+ L S
Sbjct: 198 --QGPRDINFQYLNRELLWHGFAEFLIFLLPLINVWKLKAGVSALFSPLSDLTGTQSSEE 255
Query: 217 TYKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACG 260
T+ T C CG +PT P+ I C +CY CV + + C CG
Sbjct: 256 THLTECAICGEWPTMPHSIGCKHV-FCYYCVKSNVIADIYFTCPKCG 301
>ref|XP_453090.1| unnamed protein product [Kluyveromyces lactis]
emb|CAH00186.1| unnamed protein product [Kluyveromyces lactis NRRL Y-1140]
Length = 244
Score = 207 bits (528), Expect = 6e-52, Method: Composition-based stats.
Identities = 75/283 (26%), Positives = 115/283 (40%), Gaps = 64/283 (22%)
Query: 1 MSRVAQLDSIALDKELYGQFWSEFNAAFNTSEHKEEWELALNTVVFMCATRFLPHYGSSC 60
MSRVAQLD ++LD +L S+ ++ + +VF+ +R H GS
Sbjct: 1 MSRVAQLDGVSLDLQLTRALQSDLGFPCP--------QIVVEILVFLLGSRRW-HQGSVA 51
Query: 61 TYGSALSGVVFQCRKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMMWLKLYKWVNLLYH 120
TYGS L+GV +QC + L+ VTV+ ++ L ++ NL+Y
Sbjct: 52 TYGSVLTGVGYQCSRWRLFAVTVVLRHL--------------------LHRFERTNLVYE 91
Query: 121 GCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQN 180
D+ + L+FL + S L+R F R + F + +G
Sbjct: 92 LLDLIHLLQFLTSGTGG----PSLLHRLF--------RVPAVFQPGFSYSDTTSGSSASE 139
Query: 181 RQLLWNALLELFSNTLLTKRGLLTFV--------------------KKPPRSRSTTTYKT 220
Q+LWNA +E+ + L K G ++ P S T
Sbjct: 140 VQMLWNASIEMIAGLSLFKNGFVSVTSTNAAAVAAAKAIAGGSSSVGAPGEKFSQKN--T 197
Query: 221 VCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSMCDACGSSG 263
+CP CG TN + I CC YCY C ++ +E S C C +
Sbjct: 198 LCPVCGEVATNAFTITCCNTRYCYTCALE-VEQSHCLVCNTKN 239
>ref|XP_001387892.2| peroxisome assembly protein (Peroxin-2) [Pichia stipitis CBS 6054]
gb|EAZ63869.2| peroxisome assembly protein (Peroxin-2) [Pichia stipitis CBS 6054]
Length = 399
Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats.
Identities = 76/329 (23%), Positives = 121/329 (36%), Gaps = 87/329 (26%)
Query: 3 RVAQLDSIALDKELYGQFWSEF--------NAAFNTSEHKEEWELALNTVVFMCATRFLP 54
RV+QLD+ LD EL + N+ F+ S++ E W L LN +VF L
Sbjct: 10 RVSQLDAHILDSELLSLLKEQLASIFQLHTNSRFSYSQNPELWSLLLNVLVFK-----LT 64
Query: 55 HYGSSCTYGSALSGV---------VFQCRKRTLYVVTVLAGYVWKKITHIIFN------- 98
+ S +YG AL + + KR+L + ++ Y++ K+ +++
Sbjct: 65 VWKSGSSYGLALQNLKLTDSKTNKLIGVSKRSLLLALLVGDYLYSKLQSYLYSLDDNDRS 124
Query: 99 GPHCGNQMMWLKLYKWVNLL---------YHGCDVTNFLRFLAAEGPNARAFLSPLYRAF 149
P+ +K Y + N + ++ NF+ FL + S ++RA
Sbjct: 125 EPYSFALFNRVKSYVYRNRTALISSVDNGFKTLNLINFMLFLVN-----GKYPSLIHRAL 179
Query: 150 NVHSTRLIRDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFSNTLLTK---------R 200
+ T + D N E+QNRQL+WN + E L R
Sbjct: 180 RITMTPIASDLLRF------NGSNVNFEFQNRQLVWNVMTEFLVFLLPLLQLNKLRKMAR 233
Query: 201 GLLTFVKKPPRSRSTTTYKTV----CPRCG-----------------GFPTNPYQIACCR 239
L+ K ++ + Y + C C G TNPY + C
Sbjct: 234 QALSTSKSQEKTTIISPYTNLPLSQCAICHDNNNQAAASGMKSFTTSGNITNPY-VTNCG 292
Query: 240 ANYCYVC-------VVKALEWSMCDACGS 261
YCYVC + + E C CGS
Sbjct: 293 HIYCYVCISTRFNAIKASGEELPCLRCGS 321
>ref|XP_714968.1| peroxisomal import RING finger complex component Pex2 [Candida
albicans SC5314]
ref|XP_714905.1| peroxisomal import RING finger complex component Pex2 [Candida
albicans SC5314]
gb|EAK95865.1| likely peroxisomal import RING finger complex component Pex2
[Candida albicans SC5314]
gb|EAK95929.1| likely peroxisomal import RING finger complex component Pex2
[Candida albicans SC5314]
Length = 420
Score = 198 bits (505), Expect = 3e-49, Method: Composition-based stats.
Identities = 73/319 (22%), Positives = 112/319 (35%), Gaps = 62/319 (19%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAF---NTSEHKEEWELALNTVVFMCATRFLPHYGSS 59
RV+QLD+ LD EL+ + ++ F +TS + L +++ L + S
Sbjct: 10 RVSQLDAGILDSELFSLLKEQLSSIFQLHSTSRYSFSQHPELYSLLLNLLIFRLTVWKSG 69
Query: 60 CTYGSALSGV---------VFQCRKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMMWLK 110
+YGS+L + + ++ L ++ GY++KK+ +F Q
Sbjct: 70 SSYGSSLQNLKLTDSRSGKIIGSSRKALLGAVIIGGYLYKKLESYLFFLDESSTQNSHST 129
Query: 111 LYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEFYS- 169
L K N L + T+ L L A + +S+ + R I + S
Sbjct: 130 LDKLKNYL--LINRTSILSGLENSLKIANLVNFTFFLVNGQYSSLVNRILGIIETPISSD 187
Query: 170 ----NSVFAGLEYQNRQLLWNALLEL--FSNTLLTKRGLLTFVKKPPRSR---------- 213
N E+QNRQL+WN + E F LL R L +K
Sbjct: 188 LLKFNGSNVNYEFQNRQLVWNVMTEFLVFILPLLQLRKLGRMTRKLLGRSKNSLDVQSGN 247
Query: 214 --STTTYKTV----CPRCGGF-----------------PTNPYQIACCRANYCYVCVVKA 250
+ T+Y + C C TNPY I C YCYVC+
Sbjct: 248 VPTLTSYTNLPVSECAICHDNNNQASQTGGRTFPSAGPVTNPY-ITNCGHVYCYVCISTR 306
Query: 251 LEW------SM-CDACGSS 262
M C CG
Sbjct: 307 FNMIKVNGEDMPCLRCGKR 325
>sp|Q01964|PEX2_PICPA Peroxisomal biogenesis factor 2 (Peroxin-2) (Peroxisomal protein
PER6)
emb|CAA65646.1| peroxin-2 [Pichia pastoris]
Length = 461
Score = 197 bits (501), Expect = 9e-49, Method: Composition-based stats.
Identities = 78/355 (21%), Positives = 121/355 (34%), Gaps = 111/355 (31%)
Query: 2 SRVAQLDSIALDKELYGQFWSEFNAAFNT-----------SEHKEEWELALNTVVFMCAT 50
+RV QLD+ LD E+ + + + AFN+ S + E +L L ++F
Sbjct: 13 NRVLQLDAKLLDNEISDMLYRQLSGAFNSNRLPSWLGRIHSNYASELKLLLELLIFKV-- 70
Query: 51 RFLPHYGSSCTYGSALSGVVF------------------QCRKRTLYVVTVLAGYVWKKI 92
+ +YG L +V + K+ L + +VL GY KKI
Sbjct: 71 ---TVWNKHSSYGLTLQNLVMYDGGVHNKKFRSKQQSELRVTKKILLLSSVLLGYFVKKI 127
Query: 93 THIIFN---------GPHCGN----QMMWLKLYK-WVNLLYH---GCDVTNFLRFLAAEG 135
+++ G ++ +KL K ++ L + NF+ FL +
Sbjct: 128 QSYVYSFEDYDLETDGEDLSTLERIRLKTIKLLKSQISTLEKAHSVLSLVNFVTFLVS-- 185
Query: 136 PNARAFLSPLYRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFSNT 195
+F R N+ L+ A F SN E+QNRQL+WN L E
Sbjct: 186 ---GSFPDLTTRILNIRFKPLVTTQVA----FASNPETISYEFQNRQLVWNTLTEFIVFI 238
Query: 196 L-------LTKRGLLTFVKKPPRSRSTTTY---------KTVCPRC-------------- 225
L TK + + P+S T + VC C
Sbjct: 239 LPALSVPKFTKSLVSSITGTSPKSSQVTDEDLKVFSSLPERVCAICFQNSQNSDSGAQND 298
Query: 226 ----GGFPTNPYQIACCRANYCYVCVVKALE----------------WSMCDACG 260
TNPY+ C YCYVC++ L+ + C C
Sbjct: 299 ISLNDTLVTNPYETTC-GHIYCYVCILSKLQIFKEEGKNLPKSDPNKYWHCLRCN 352
>gb|AAT97412.1| peroxin 2 [Pichia angusta]
Length = 366
Score = 194 bits (493), Expect = 6e-48, Method: Composition-based stats.
Identities = 71/335 (21%), Positives = 113/335 (33%), Gaps = 90/335 (26%)
Query: 2 SRVAQLDSIALDKELYGQFWSEFNAAFNT-----------SEHKEEWELALNTVVFMCAT 50
+RV Q+D+ LD E++ + N A + S + +E LAL VF
Sbjct: 9 NRVLQVDAKLLDNEIFDILAKQLNEAISNPKLPRFFQLLNSRYSDELRLALELCVFKV-- 66
Query: 51 RFLPHYGSSCTYGSALSGVVFQ----CRKRTLYVVTVLAGYVW----------KKITHII 96
+ S +YG L +V R+ T ++ L KK+ +
Sbjct: 67 ---TIWNKSSSYGLLLQNLVMSDGGDRRRNTKSELSRLKKTALLSYLILSYLYKKLESHL 123
Query: 97 FNGPH-----------------CGNQMMWLKLYKWVNLLYHGCDVTNFLRFLAAEGPNAR 139
++ Q + L KW Y G + NFL FL
Sbjct: 124 YSLDADDEEDRTKWHQYVHMIMARLQRVLPTLQKW----YAGLSLANFLAFLIH-----G 174
Query: 140 AFLSPLYRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFS------ 193
+ + + R + L+ + F SN E+Q+RQL+WN L E
Sbjct: 175 QYPNLVNRVLRIRYKPLV----STQVSFASNPETISYEFQDRQLVWNTLTEFLVFIMPIL 230
Query: 194 -NTLLTKRGLLTFVKKPPRSRSTTTYKTVCPRCGGF-------------------PTNPY 233
+ L+K + + T Y+ + RC TNP+
Sbjct: 231 SMSKLSKSVVRLLQTDQKQDEKETIYRFLPERCCAICYQNTTRAGVADASIDEHLITNPF 290
Query: 234 QIACCRANYCYVCVVKALEWS---MCDACGSSGRL 265
+ +C YCYVC++ LE +C CG
Sbjct: 291 ETSCGHV-YCYVCLMAKLEDGDPWLCLRCGERVEF 324
>emb|CAO02572.1| peroxisomal membrane protein [Kluyveromyces waltii]
emb|CAO02577.1| peroxisomal membrane protein [Kluyveromyces waltii]
Length = 222
Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats.
Identities = 68/237 (28%), Positives = 114/237 (48%), Gaps = 21/237 (8%)
Query: 4 VAQLDSIALDKELYGQFWSEFNAAFNTSEHKEEWELALNTVVFMCATRFLPHYGSSCTYG 63
V Q+D LD +L Q WS + S H E L+ + F +T ++ TYG
Sbjct: 3 VNQVDGNKLDIDLDDQLWSLLSTKLKPSSHTSEIRFLLSALTFYLST--TSDNINTLTYG 60
Query: 64 SALSGVVFQCRKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMMWLKLYKWVNLLYHGCD 123
S+L+G ++ KRTL++ VL+ ++ +K ++N + +LK+Y ++ +
Sbjct: 61 SSLTGTCYKTTKRTLFIANVLSPFLLQKFQTYVYN-----SGASFLKVYNLLHKIATVWS 115
Query: 124 VTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQNRQL 183
+T FL+ ++ P FLS L++ + + S+FY NSV A +E+QN QL
Sbjct: 116 LTTFLKLISGNNP---PFLSLLHKLLRIQAIPYTN------SDFYQNSVNASIEFQNTQL 166
Query: 184 LWNALLELFSNTLLTKRGLLTFVKKPPRSRSTTTYKTV----CPRCGGFPTNPYQIA 236
L L NT + LL F+ K ++ +T+ CP+C PT PY+ +
Sbjct: 167 L-YNALLQLLNTHIIGSSLLKFLTKRQSGQTKHQKQTIQIRNCPQCNEIPTIPYKTS 222
>gb|AAC49423.1| Pay5p
Length = 380
Score = 184 bits (469), Expect = 4e-45, Method: Composition-based stats.
Identities = 74/316 (23%), Positives = 107/316 (33%), Gaps = 87/316 (27%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTS------EHKEEWELALNTVVFMCATRFLPHY 56
RV QLD+ LD EL ++ F +++ E LAL ++F L +
Sbjct: 18 RVHQLDASLLDAELVDLLKNQLFKGFTNFHPEFRDKYESELVLALKLILFK-----LTVW 72
Query: 57 GSSCTYGSALSGVVF--------------QCRKRTLYVVTVLAGYVWKKITHIIF----- 97
+ TYG L + F +K ++ V GY+W KI +
Sbjct: 73 DHAITYGGKLQNLKFIDSRHSSKLQIQPSVIQKLGYGILVVGGGYLWSKIEGYLLARSED 132
Query: 98 -------NGPHCGNQMMWLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFN 150
+ LK+ + +LLY + NF+ FL Y +
Sbjct: 133 DVATDGTSVRGASAARGALKVANFASLLYSAATLGNFVAFL--------------YTGYA 178
Query: 151 VHSTRLIRDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFSNT--LLTKRGLLTFVKK 208
RL+R + S V E+QNRQL+WNA E LL L +++
Sbjct: 179 TVIMRLLRIRLVPSQRTSSRQV--SYEFQNRQLVWNAFTEFLIFILPLLQLPKLKRRIER 236
Query: 209 PPRSRSTTTYKTV---------------CPRC----------------GGFPTNPYQIAC 237
+S + T V C C TNPYQ C
Sbjct: 237 KLQSLNVTRVGNVEEASEGELAHLPQKTCAICFRDEEEQEGGGGASHYSTDVTNPYQADC 296
Query: 238 CRANYCYVCVVKALEW 253
YCYVC+V L
Sbjct: 297 GHV-YCYVCLVTKLAQ 311
>ref|XP_504845.1| YlPEX2 [Yarrowia lipolytica]
sp|Q99155|PEX2_YARLI Peroxisomal biogenesis factor 2 (Peroxin-2) (Peroxisomal protein
PAY5)
emb|CAG77647.1| YlPEX2 [Yarrowia lipolytica CLIB122]
Length = 381
Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats.
Identities = 73/316 (23%), Positives = 106/316 (33%), Gaps = 86/316 (27%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTS------EHKEEWELALNTVVFMCATRFLPHY 56
RV QLD+ LD EL ++ F +++ E LAL ++F L +
Sbjct: 18 RVHQLDASLLDAELVDLLKNQLFKGFTNFHPEFRDKYESELVLALKLILFK-----LTVW 72
Query: 57 GSSCTYGSALSGVVF--------------QCRKRTLYVVTVLAGYVWKKITHIIF----- 97
+ TYG L + F +K ++ V GY+W KI +
Sbjct: 73 DHAITYGGKLQNLKFIDSRHSSKLQIQPSVIQKLGYGILVVGGGYLWSKIEGYLLARSED 132
Query: 98 -------NGPHCGNQMMWLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFN 150
+ LK+ + +LLY + NF+ FL +
Sbjct: 133 DVATDGTSVRGASAARGALKVANFASLLYSAATLGNFVAFLYTGR-------------YA 179
Query: 151 VHSTRLIRDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFSNT--LLTKRGLLTFVKK 208
RL+R + S V E+QNRQL+WNA E LL L +++
Sbjct: 180 TVIMRLLRIRLVPSQRTSSRQV--SYEFQNRQLVWNAFTEFLIFILPLLQLPKLKRRIER 237
Query: 209 PPRSRSTTTYKTV---------------CPRC----------------GGFPTNPYQIAC 237
+S + T V C C TNPYQ C
Sbjct: 238 KLQSLNVTRVGNVEEASEGELAHLPQKTCAICFRDEEEQEGGGGASHYSTDVTNPYQADC 297
Query: 238 CRANYCYVCVVKALEW 253
YCYVC+V L
Sbjct: 298 GHV-YCYVCLVTKLAQ 312
>ref|XP_001528114.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gb|EDK42456.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 470
Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats.
Identities = 76/355 (21%), Positives = 124/355 (34%), Gaps = 112/355 (31%)
Query: 2 SRVAQLDSIALDKELYGQFWSEFNAAF---------------NTSEHKEEWELALNTVVF 46
SRV+QLD+ LD EL+ + + F + S+H E + L LN ++F
Sbjct: 9 SRVSQLDAGILDTELFTLLKDQVKSIFQLHETSGTNSYASHLSYSKHPELYSLLLNLLIF 68
Query: 47 MCATRFLPHYGSSCTYGSALSGV---------VFQCRKRTLYVVTVLAGYVWKKITHIIF 97
L + S +YGS+L + V K+ L + V+ Y++K++ +++
Sbjct: 69 K-----LTVWKSGASYGSSLQNLKLTNVKNGQVIGLNKKGLLLAVVVGTYLYKRVETLLY 123
Query: 98 -----------NGPHCGNQMMWL--------KLYKWVNLLYHGCDVTNFLRFLAAEGPNA 138
+G + + + K+ ++ + ++ NF FL
Sbjct: 124 QMDENEIEAEASGDYDSIRYKFKSFVVNNRNKVLTKIDDVLKIANLINFTMFLVN----- 178
Query: 139 RAFLSPLYRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQNRQLLWNALLEL--FSNTL 196
+ S ++R F + T LI D N E+QNRQL+WN + E F L
Sbjct: 179 GKYSSIVHRLFGITETPLISDLLKF------NGSNVNYEFQNRQLVWNVMTEFLVFLLPL 232
Query: 197 LTKRGLLTFVKKPPRSRST----------------------TTYKTV----CPRCGGF-- 228
L R L + + K T Y+ + C C
Sbjct: 233 LQVRKLRSTMGKLLSKGIRGNAVEGQKSSGNMSSSSSNSKFTRYRNLPLLECAICHDNND 292
Query: 229 ---------------PTNPYQIACCRANYCYVC-------VVKALEWSMCDACGS 261
TNP I C YCYVC + + + C C S
Sbjct: 293 KASRSGGRVFATAGPVTNP-CITNCGHVYCYVCIATQFNIIKSSGDSVSCLRCDS 346
>emb|CAF97942.1| unnamed protein product [Tetraodon nigroviridis]
Length = 378
Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 62/316 (19%), Positives = 109/316 (34%), Gaps = 65/316 (20%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHKEEW--ELALNTVVFMCATRFLPHYGSSC 60
R+ QLD++ LD L W++F+ F E L ++ + RF Y +S
Sbjct: 51 RIDQLDALELDSALEQLLWTQFSQCFQNCRPGLLTPAEPELRALLQLLLWRF-TLYSNSA 109
Query: 61 TYGSALSGVVF-----------QCRKRTLYVVTV-LAGYVWKKITHIIFNGPHCGNQMMW 108
T G +L + + R++ + + + ++ +H +
Sbjct: 110 TVGQSLLSLRYHNLSSASRYRPLTRRQKWGLALLDIGARWLQERSHSLLLLLGLSAGGAA 169
Query: 109 LK------------LYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRL 156
+ + V + V NFL FL S R+
Sbjct: 170 SQPEGGLLALGLRRCFGLVCSVAQIASVVNFLVFLRKGQHPR-------------LSERI 216
Query: 157 IRDGSAIASEFYSNSVFAGLEYQNRQLLWNALLE--LFSNTLLTKRGLL----TFVKKPP 210
+ +A + V +Y NR+LLW+ E +F L+ R L +FV
Sbjct: 217 VGARAAFSKPDVVRDV--SYQYMNRELLWHGFSEFLIFLLPLINTRRLKATASSFVFGGA 274
Query: 211 RSRSTTTYK-----TVCPRCGGFPTNPYQIACCRANYCYVCVVK---ALEWSMCDACGS- 261
++ + C CG +PT P+ + C R +CY C+ A + +C CG+
Sbjct: 275 KTEGKVASEGQGLLNQCGLCGEWPTMPHTVGC-RHVFCYYCIKSHSMADPFLVCPKCGAE 333
Query: 262 -------SGRLTASPV 270
+ PV
Sbjct: 334 AGQLNPLRANYSLIPV 349
>emb|CAO45868.1| unnamed protein product [Vitis vinifera]
Length = 346
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 61/283 (21%), Positives = 97/283 (34%), Gaps = 55/283 (19%)
Query: 1 MSRVAQLDSIALDKELYGQFWSEFNAAFNTSEHKEEW--ELALNTVVFMCATRFLPHYGS 58
+SRV Q+D+ LD E+ + F+ + + E L+ + RF
Sbjct: 47 ISRVNQVDAARLDIEISAMLKEQLVKVFSLMKPGMLFQYEPELDAFLEFLIWRFSIWVDK 106
Query: 59 SCTYGSALSGVVFQ---------------------CRKRTLYVVTVLAG-YVWKKITHI- 95
T G+ L + ++ ++ Y V + G Y+W ++
Sbjct: 107 -PTPGNGLMNLRYRDERTMELRGKVRTGLEGPGLTVAQKIWYCVATVGGQYIWARLQSFS 165
Query: 96 IFNGPHCGNQMMWLKLY----KWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNV 151
F Q + + + LY +N L FL + YR
Sbjct: 166 AFRRWGDSEQRSVARRAWIMIQRIEGLYKAASFSNLLIFL----------FTGRYRNL-- 213
Query: 152 HSTRLIRDGSAIASEFYSNS-VFAGLEYQNRQLLWNALLELFS------NTLLTKRGLLT 204
R ++ S N EY NRQL+WN E+ N+ + L
Sbjct: 214 -IERALQARLVYGSP---NMNRAVSFEYMNRQLVWNEFSEMLLLLLPLLNSSSIRNFLRP 269
Query: 205 FVKKPPRSRSTTTYKTVCPRCGGFPTNPYQIACCRANYCYVCV 247
F K +S S+ +T CP C PT P+ C YCY C+
Sbjct: 270 FSK--NKSSSSEGDETACPICQASPTIPFLALPCEHRYCYYCL 310
>ref|XP_001202188.1| PREDICTED: similar to peroxisomal membrane protein 3, 35kDa
(Zellweger syndrome), partial [Strongylocentrotus
purpuratus]
ref|XP_797522.2| PREDICTED: similar to peroxisomal membrane protein 3, 35kDa
(Zellweger syndrome), partial [Strongylocentrotus
purpuratus]
Length = 340
Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats.
Identities = 46/273 (16%), Positives = 87/273 (31%), Gaps = 43/273 (15%)
Query: 2 SRVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSS 59
S+ + LD+ LD EL+ ++ AF + + +N V+ + F
Sbjct: 85 SKTSDLDAHQLDDELHLLLRAQLTKAFQFFRPGVLSKCDPEVNAVLRLLIWHFSIS-KVG 143
Query: 60 CTYGSALSGVVFQCR-------------KRTLYVVTVLAGYVWKKITHIIFNGPHCGNQM 106
T G + +++ + LY + ++ +++ + + +
Sbjct: 144 ATLGQQMLNMLYTNSLPQGQRSLSLDRKHQLLYALLLVGCRWFQERSSDLSLMTGSSEKF 203
Query: 107 MWL-KLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIAS 165
+ KL + L + NFL FL + S L R + A
Sbjct: 204 QLVWKLIDLLERLVKVASLVNFLVFL-----QQGFYPSLLERVLGI--------IPRFAQ 250
Query: 166 EFYSNSVFAGLEYQNRQLLWNALLELFSNTLLTKRGLLTFVKK----------PPRSRST 215
V E+ R+LLW+ E L + +
Sbjct: 251 PQSVRQVT--FEFMTRELLWHGFAEFLFFLLPLVNIHRIRNVIRRRIAGVPSGRGTLQRS 308
Query: 216 TTYKTVCPRCGGFPTNPYQIACCRANYCYVCVV 248
C CG +PT P ++ C + +CY C+
Sbjct: 309 LAECKECAVCGEWPTCPQEMGC-QHVFCYYCLK 340
>ref|NP_001055075.1| Os05g0275700 [Oryza sativa (japonica cultivar-group)]
gb|AAT85132.1| putative peroxisome assembly protein 2 [Oryza sativa (japonica
cultivar-group)]
dbj|BAF16989.1| Os05g0275700 [Oryza sativa (japonica cultivar-group)]
Length = 342
Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats.
Identities = 60/284 (21%), Positives = 100/284 (35%), Gaps = 56/284 (19%)
Query: 1 MSRVAQLDSIALDKELYGQFWSEFNAAFNTSEHKEEW--ELALNTVVFMCATRFLPHYGS 58
+SRV Q D+ LD E+ + F+ + + E L+ + RF
Sbjct: 50 ISRVNQFDAARLDVEMSAMLKEQLVKVFSLVKPGLLFQYEPELDAFLEFLIWRFSIWVDK 109
Query: 59 SCTYGSALSGVVFQ----------------------CRKRTLYVVTVLAG-YVWKKITHI 95
T G+AL + ++ ++ LY ++ + G Y+W ++
Sbjct: 110 -PTPGNALMNLRYRDERAAPITGKEVRTGLEGPGLSVSQKVLYCISTVGGQYIWSRLQSF 168
Query: 96 IFNGPHCGNQMMWLKLYKW-----VNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFN 150
++ L W LY N L FL +
Sbjct: 169 SAFRRWGDSEQRPLARRAWGLVQHAEGLYRASSFFNLLLFLYGAR-------------YK 215
Query: 151 VHSTRLIRDGSAIASEFYSNS-VFAGLEYQNRQLLWNALLELFS------NTLLTKRGLL 203
R+++ S N EY NRQL+WN E+ N+ K+ LL
Sbjct: 216 TIVERILKARLVYESP---NMNRAVSFEYMNRQLVWNEFSEMLLLLLPLLNSSSVKKFLL 272
Query: 204 TFVKKPPRSRSTTTYKTVCPRCGGFPTNPYQIACCRANYCYVCV 247
F K +S S++ + CP C P+ P++ C+ YCY C+
Sbjct: 273 PFSKD--KSASSSGDEADCPICRSSPSIPFEALPCQHRYCYYCL 314
>ref|XP_964597.1| peroxisomal biogenesis factor 2 [Neurospora crassa OR74A]
gb|EAA35361.1| peroxisomal biogenesis factor 2 [Neurospora crassa OR74A]
Length = 639
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 70/341 (20%), Positives = 103/341 (30%), Gaps = 100/341 (29%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNT------SEHKEEWE----LALNTVVFMCATRF 52
RV Q+D+ LD EL ++ A S K+EW+ L L ++F
Sbjct: 115 RVGQVDAELLDAELVDLLRTQVGDALKYIGGGVSSTLKDEWDAEILLILRAILFK----- 169
Query: 53 LPHYGSSCTYGSALSGVVF--------------QCRKRTLYVVTVLAGYVWKKITHIIFN 98
L + TYG+AL + + + +K VTV Y+W K + +
Sbjct: 170 LTIWDHDATYGAALQNLRYTDARKSGPVLQPPSKLQKSLYGFVTVGGKYLWTKWETYLLD 229
Query: 99 GPHCGNQM------MWLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVH 152
+ +L + + +F FL L+ +
Sbjct: 230 HDEASSYSVEGPNPNIQRLSRLTESIGTFHAFASFASFLV----------FLLHGRYRTI 279
Query: 153 STRLIRDGSAIASEFYSNSVFAGLEYQNRQLLWNALLEL--FSNTLLTKRGLL------T 204
RL+R A S EY NRQL+W+A E F L+
Sbjct: 280 LDRLLRMRLA--PPTSQVSREVSFEYLNRQLVWHAFTEFLLFVLPLVGINRWRRWLARTW 337
Query: 205 FVKKPPRSRSTTTYKTV-------------CPRC-------------------------- 225
K + S+T T C C
Sbjct: 338 RRTKSMLTTSSTNDPTQNKGGEFAFLPERTCAICYQDQNSAKSEAELMAAASSSSGVVGS 397
Query: 226 -GGFPTNPYQIACCRANYCYVCVVKALEWS-----MCDACG 260
TNPY+ C YC+VCV +E C CG
Sbjct: 398 AQTDITNPYEAMPCGCVYCFVCVATRIEREEGEGWTCLRCG 438
>ref|XP_001269799.1| peroxisome biosynthesis protein (Peroxin-2), putative [Aspergillus
clavatus NRRL 1]
gb|EAW08373.1| peroxisome biosynthesis protein (Peroxin-2), putative [Aspergillus
clavatus NRRL 1]
Length = 486
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 66/335 (19%), Positives = 114/335 (34%), Gaps = 97/335 (28%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK------EEWELALNTVVFMCATRFLPHY 56
RV Q+D+ LD+EL G ++ A + E + L ++F + +
Sbjct: 74 RVGQVDAELLDEELLGLLKNQVGDALKYFGPQLREDWSHEIQFVLRALLFKLSI-----W 128
Query: 57 GSSCTYGSALSGVVFQ-CR------------KRTLY-VVTVLAGYVWKKITHIIFN---- 98
+ +YG+AL G+ + CR ++T+Y ++TV Y W+K + N
Sbjct: 129 DHNASYGAALQGLRYVDCRSKGPVHSTPTRWQKTIYGLLTVGGRYAWEKWESWLINQEGG 188
Query: 99 -GPHCGNQMMWLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLI 157
M ++ ++ + T+FL FL + + + R + T
Sbjct: 189 YEEPSREVRMLSRMTDLISTTHSIAAFTSFLVFLVN-----GRYRTLVDRILRIRLTP-- 241
Query: 158 RDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFSNTLLTK-----RGLLTFVKKPPRS 212
++ EY NRQL+W+A E L R L+ V + S
Sbjct: 242 --------PSAQSAREVSFEYLNRQLVWHAFTEFLLFLLPLVGISRWRRWLSRVWRKMIS 293
Query: 213 RSTTTY----------------KTVCPRC--------------------------GGFPT 230
++ + C C T
Sbjct: 294 AIRSSGDDDEPVEKQGELAYLPERTCAICYKDQNPTSTSENEVMAASSGGIVGSAQTDIT 353
Query: 231 NPYQIACCRANYCYVCVVKALEWS-----MCDACG 260
NPY+ C YC+VC+V+ +E +C CG
Sbjct: 354 NPYETIPCGCIYCFVCLVQKVEGEEGEGWVCLRCG 388
>ref|NP_565222.1| TED3 (REVERSAL OF THE DET PHENOTYPE); protein binding / zinc ion
binding [Arabidopsis thaliana]
sp|Q9CA86|PEX2_ARATH Peroxisome assembly protein 2 (Peroxin-2) (AthPEX2) (Pex2p)
gb|AAG52254.1|AC011717_22 putative RING finger protein; 84236-82024 [Arabidopsis thaliana]
gb|AAL36419.1| unknown protein [Arabidopsis thaliana]
gb|AAM20014.1| unknown protein [Arabidopsis thaliana]
Length = 333
Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats.
Identities = 62/300 (20%), Positives = 99/300 (33%), Gaps = 58/300 (19%)
Query: 1 MSRVAQLDSIALDKELYGQFWSEFNAAFNTSEHKEEW--ELALNTVVFMCATRFLPHYGS 58
+SRV Q D+ LD E+ + F + + E L+ + RF
Sbjct: 37 ISRVNQFDAARLDVEMSAMLKEQLVKVFTLMKPGMLFQYEPELDAFLEFLIWRFSIWVDK 96
Query: 59 SCTYGSALSGVVFQ-----------------------CRKRTLYVVTVLAG-YVWKKITH 94
T G+AL + ++ ++ Y V + G Y++ ++
Sbjct: 97 -PTPGNALMNLRYRDERGVVAQHLGKVRTGLEGPGLTSPQKIWYCVASVGGQYLFSRLQS 155
Query: 95 IIFNGPHCGNQMMWL-----KLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAF 149
++ L L + + +Y N L FL + YR
Sbjct: 156 FSAFRRWGDSEQRPLARRLWTLVQRIEGIYKAASFLNLLSFLY----------TGRYRNL 205
Query: 150 NVHSTRLIRDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFS------NTLLTKRGLL 203
+ ++ S + SV EY NRQL+WN E+ N+ K L
Sbjct: 206 ---IEKALKARLVYRSPHMNRSV--SFEYMNRQLVWNEFSEMLLLLLPLLNSSAVKNILS 260
Query: 204 TFVKKPPRSRSTTTYKTVCPRCGGFPTNPYQIACCRANYCYVCVVK---ALEWSMCDACG 260
F K +S ST CP C P P+ C+ YCY C+ + C C
Sbjct: 261 PFAKD--KSSSTKEDTVTCPICQVDPAIPFIALPCQHRYCYYCIRTRCASAASFRCLRCN 318
>ref|XP_750106.1| peroxisome biosynthesis protein (Peroxin-2) [Aspergillus fumigatus
Af293]
gb|EAL88068.1| peroxisome biosynthesis protein (Peroxin-2), putative [Aspergillus
fumigatus Af293]
gb|EDP55700.1| peroxisome biosynthesis protein (Peroxin-2), putative [Aspergillus
fumigatus A1163]
Length = 479
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 64/335 (19%), Positives = 110/335 (32%), Gaps = 97/335 (28%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK------EEWELALNTVVFMCATRFLPHY 56
RV Q+D+ LD+EL G + A + E + AL ++F + +
Sbjct: 74 RVGQVDAELLDEELLGLLKGQVGNALKYFGPQLREDWSHEIQFALRAILFKLSI-----W 128
Query: 57 GSSCTYGSALSGVVFQCRK-------------RTLY-VVTVLAGYVWKKITHIIFN---- 98
+ +YG+AL G+ + + ++LY ++TV Y W+K + +
Sbjct: 129 DHNASYGAALQGLRYVDSRSKGPVHSTPTKWQKSLYGLLTVGGRYAWEKWESWLISQEGG 188
Query: 99 -GPHCGNQMMWLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLI 157
+ M +L V+ + +FL FL + + + R + T
Sbjct: 189 YEEPSRDVRMLARLTGLVSTTHSIAAFVSFLVFLVN-----GRYRTLVDRILRIRLTP-- 241
Query: 158 RDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFSNTLLTK-----RGLLTFVKKPPRS 212
++ EY NRQL+W+A E L R L+ + S
Sbjct: 242 --------PSAQSAREVSFEYLNRQLVWHAFTEFLLFLLPLVGISRWRRWLSRAWRKAIS 293
Query: 213 RSTTTY----------------KTVCPRC--------------------------GGFPT 230
+ + C C T
Sbjct: 294 AIRSRDDDEVEVEKRGELAFLPERTCAICYKDQNPASTSENDIITASAGGIVGSAQTDIT 353
Query: 231 NPYQIACCRANYCYVCVVKALEWS-----MCDACG 260
NPY+ C YC+VC+V+ +E +C CG
Sbjct: 354 NPYETVPCGCIYCFVCLVQKVEGEEGEGWICLRCG 388
>ref|XP_001265299.1| peroxisome biosynthesis protein (Peroxin-2), putative [Neosartorya
fischeri NRRL 181]
gb|EAW23402.1| peroxisome biosynthesis protein (Peroxin-2), putative [Neosartorya
fischeri NRRL 181]
Length = 479
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 64/335 (19%), Positives = 109/335 (32%), Gaps = 97/335 (28%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK------EEWELALNTVVFMCATRFLPHY 56
RV Q+D+ LD+EL G + A + E + AL ++F + +
Sbjct: 74 RVGQVDAELLDEELLGLLKGQVGNALKYFGPQLREDWSHEIQFALRAILFKLSI-----W 128
Query: 57 GSSCTYGSALSGVVFQCRK-------------RTLY-VVTVLAGYVWKKITHIIFN---- 98
+ +YG+AL G+ + + ++LY ++TV Y W+K +
Sbjct: 129 DHNASYGAALQGLRYVDSRSKGPVHSTPTKWQKSLYGLLTVGGRYAWEKWESWLIGQEGG 188
Query: 99 -GPHCGNQMMWLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLI 157
+ M +L V+ + +FL FL + + + R + T
Sbjct: 189 YEEPSRDVRMLARLTDLVSTTHSIAAFVSFLVFLVN-----GRYRTLIDRILRIRLTP-- 241
Query: 158 RDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFSNTLLTK-----RGLLTFVKKPPRS 212
++ EY NRQL+W+A E L R L+ + S
Sbjct: 242 --------PSAQSAREVSFEYLNRQLVWHAFTEFLLFLLPLVGISRWRRWLSRAWRKTIS 293
Query: 213 RSTTTY----------------KTVCPRC--------------------------GGFPT 230
+ + C C T
Sbjct: 294 AIRSRDDDEDEVEKRGELAFLPERTCAICYKDQNPASTSENDIIAASAGGIVGSAQTDIT 353
Query: 231 NPYQIACCRANYCYVCVVKALEWS-----MCDACG 260
NPY+ C YC+VC+V+ +E +C CG
Sbjct: 354 NPYETVPCGCIYCFVCLVQKVEGEEGEGWICLRCG 388
>gb|EEH42793.1| peroxisomal biogenesis factor 2 [Paracoccidioides brasiliensis
Pb18]
Length = 488
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 64/337 (18%), Positives = 103/337 (30%), Gaps = 98/337 (29%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTS------EHKEEWELALNTVVFMCATRFLPHY 56
RV Q+D+ LD+EL + + E + AL ++F + +
Sbjct: 71 RVGQVDAELLDEELLTLLKGQVGEGLKYFGSHIKEDWTHEIQFALRAILFKLS-----VW 125
Query: 57 GSSCTYGSALSGVVF--------------QCRKRTLYVVTVLAGYVWKKITHIIFNG--- 99
+ +YG+AL + + + +K + TV Y+W K + +
Sbjct: 126 DHNASYGAALQNLKYTDSRQKGPTLSDPTKSQKALYGLFTVGGRYIWDKWESWLIDQEGG 185
Query: 100 -PHCGNQMMWLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIR 158
Q+ L + N + + +F+ FL + RL+R
Sbjct: 186 YDEPSTQIRLLS--RITNTISTTHSIASFVSFLV----------FLTNGRYRTLIDRLLR 233
Query: 159 DGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFSNTLLTK-----RGLLTFVKKPPRSR 213
A F S EY NRQL+W+A E L R +T + S
Sbjct: 234 MRLA--PPFTQVSREVSFEYLNRQLVWHAFTEFLLFLLPLVGIGRWRRWITRAWRKTMSS 291
Query: 214 STTTY-----------------KTVCPRC----------------------------GGF 228
T + CP C
Sbjct: 292 LRTADEGNDEQVKAQGGLAFLPERTCPICYQEQNPAARSENDVLGASGASGGIIGSAQTD 351
Query: 229 PTNPYQIACCRANYCYVCVVKALEWS-----MCDACG 260
NPY+ C YC+VC+ + LE +C CG
Sbjct: 352 VVNPYETMPCGCIYCFVCIAEKLEAEEGEGWICLRCG 388
>ref|XP_001220945.1| hypothetical protein CHGG_01724 [Chaetomium globosum CBS 148.51]
gb|EAQ93489.1| hypothetical protein CHGG_01724 [Chaetomium globosum CBS 148.51]
Length = 597
Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats.
Identities = 66/344 (19%), Positives = 96/344 (27%), Gaps = 103/344 (29%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEH---------------------KEEWELAL 41
RV Q+D+ LD+EL G + A + E L L
Sbjct: 139 RVGQVDAELLDEELVGLLRGQVGDALRYVGGGVGGGGGGAGGAGGSAVLHDWEAEVSLVL 198
Query: 42 NTVVFMCATRFLPHYGSSCTYGSALSGVVF--------------QCRKRTLYVVTVLAGY 87
V+F L + TYG+AL + + + +K +VTV Y
Sbjct: 199 RAVLFK-----LTVWDHDATYGAALQNLRYTDARRDGPGLVPPSKWQKSLYGLVTVGGRY 253
Query: 88 VWKKITHIIFNGPHCGNQMM--WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPL 145
+W K + +L +W ++L F FL L
Sbjct: 254 LWAKWEDWLLEQDDGFQGPSPGAQRLARWSSMLSTMHASAAFASFLV----------FLL 303
Query: 146 YRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQNRQLLWNALLEL--FSNTLLTKRGLL 203
+ + R++R A S EY NRQL+W+A E F L+
Sbjct: 304 HGRYRTLLDRVLRMRLA--PPTSQVSREVSFEYLNRQLVWHAFTEFLLFVLPLVGINRWR 361
Query: 204 T-------------FVKKPPRSRSTTTYKTV----CPRC--------------------- 225
Y + C C
Sbjct: 362 RWLARTWRKTKKIMTTGAEGADEKKGEYSFLPERTCAICYQDQNSVSSENDLMAATSSGV 421
Query: 226 ----GGFPTNPYQIACCRANYCYVCVVKALEWS-----MCDACG 260
TNPY C YC+VC+ +E C CG
Sbjct: 422 VGSAQTDITNPYATIPCGCIYCFVCLTTRIEREEGEGWSCLRCG 465
>ref|XP_645304.1| RING Zn finger-containing protein [Dictyostelium discoideum AX4]
gb|AAS45382.1| similar to Rattus norvegicus (Rat). Peroxisome assembly factor-1
(PAF-1) (Peroxin-2) (Peroxisomal membrane protein 3)
[Dictyostelium discoideum]
gb|EAL71269.1| RING Zn finger-containing protein [Dictyostelium discoideum AX4]
Length = 423
Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats.
Identities = 56/319 (17%), Positives = 99/319 (31%), Gaps = 77/319 (24%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEH--KEEWELALNTVVFMCATRFLPHYGSSC 60
RV+QLDS LD+E+ S+F F + ++ +N V+ L +
Sbjct: 110 RVSQLDSARLDEEILDLLRSQFMKIFTFFKPNFIHNFQPEINLVL-KSVIYKLSIFNLGT 168
Query: 61 TYGSALSGVVFQC-------------------RKRTLYVVTVLAGYVWKKITHIIFNG-- 99
TYG+ L + ++ +K ++ + ++W +I + N
Sbjct: 169 TYGNQLQNLTYRNEKAFDPIRGSDQLNKLTMRQKWLSGLINIGGEWLWTRINRYLINNNW 228
Query: 100 ---PHCGNQMMWLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRL 156
P + + + Y + NFL FL +++ + R ++
Sbjct: 229 SEHPPNDIRKKFWNFLNFAESAYKALALLNFLTFLFN-----GKYVTLVNRILHMRLVYA 283
Query: 157 IRDGSAIASEFYSNSVFAGLEYQNRQLLWNALLEL--FSNTLLTKRGLLTFVKKPPRSRS 214
S EY NR L+W+ E F L+ + +F+ + S
Sbjct: 284 HPTLS----------RNISFEYMNRLLVWHGFTEFILFIMPLINIDRIKSFLYRLLVKTS 333
Query: 215 TTTYKTV----------------------------CPRCGGFP-TNPYQIACCRANYCYV 245
CP C P + PY C +CY
Sbjct: 334 FGNSSGNNNNTASNPLQQLQKQQLLIQQQQMALAKCPICMNDPISMPYSADC-GHLFCYY 392
Query: 246 CVVKALEWS---MCDACGS 261
C+ + C C S
Sbjct: 393 CIKTSCMIDSSFTCPRCNS 411
>ref|XP_001816880.1| hypothetical protein [Aspergillus oryzae RIB40]
dbj|BAE54878.1| unnamed protein product [Aspergillus oryzae]
Length = 516
Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats.
Identities = 60/337 (17%), Positives = 106/337 (31%), Gaps = 99/337 (29%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHKE------EWELALNTVVFMCATRFLPHY 56
RV Q+D+ LD+EL G + A + E + AL ++F + +
Sbjct: 121 RVGQVDAELLDEELLGLLKGQVGNALKYFGPQAREDWSHEIQFALRAILFKLSI-----W 175
Query: 57 GSSCTYGSALSGVVF--------------QCRKRTLYVVTVLAGYVWKKITHIIFN---- 98
+ +YG+AL + + + +K ++TV Y W+K + N
Sbjct: 176 DHNASYGAALQNLKYVDTRSKGPIHSAPTKWQKSLYGLLTVGGRYAWEKWESWLINQEGG 235
Query: 99 -GPHCGNQMMWLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLI 157
+ ++ ++ + +FL FL + + + R + T
Sbjct: 236 YDEPSREVRILARMTDLISTTHSIAAFISFLVFLVN-----GRYRTLVDRILRIRLTP-- 288
Query: 158 RDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFSNTLLTK-----RGLLTFVKKPPRS 212
S EY NRQL+W+A E L R ++ + S
Sbjct: 289 --------PSAQASREVSFEYLNRQLVWHAFTEFLLFLLPLVGISRWRRWISRAWRRTMS 340
Query: 213 RSTTTY----------------KTVCPRC----------------------------GGF 228
++ + C C
Sbjct: 341 SIRSSDGDSEEAEKQGELAFLPERTCAICYKASNPESATESEVIAASAASGGILGSAQTD 400
Query: 229 PTNPYQIACCRANYCYVCVVKALEWS-----MCDACG 260
TNPY+ C YC+VC+V+ +E +C CG
Sbjct: 401 ITNPYEAIPCGCVYCFVCLVQKVEGEEGEGWICLRCG 437
>gb|AAM61388.1| putative RING finger protein [Arabidopsis thaliana]
Length = 333
Score = 137 bits (347), Expect = 5e-31, Method: Composition-based stats.
Identities = 62/300 (20%), Positives = 98/300 (32%), Gaps = 58/300 (19%)
Query: 1 MSRVAQLDSIALDKELYGQFWSEFNAAFNTSEHKEEW--ELALNTVVFMCATRFLPHYGS 58
+SRV Q D+ LD E+ + F + + E L+ + RF
Sbjct: 37 ISRVNQFDAARLDVEMSAMLKEQLVKVFTLMKPGMLFQYEPELDAFLEFLIWRFSIWVDK 96
Query: 59 SCTYGSALSGVVFQ-----------------------CRKRTLYVVTVLAG-YVWKKITH 94
T G+AL + ++ ++ Y V + G Y++ ++
Sbjct: 97 -PTPGNALMNLRYRDERGVVAQHLGKVRTGLEGPGLTSPQKIWYCVASVGGQYLFSRLQS 155
Query: 95 IIFNGPHCGNQMMWL-----KLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAF 149
++ L L + + +Y N L FL + YR
Sbjct: 156 FSAFRRWGDSEQRPLARRLWTLVQRIEGIYKAASFLNLLSFLY----------TGRYRNL 205
Query: 150 NVHSTRLIRDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFS------NTLLTKRGLL 203
+ ++ S + SV EY NRQL+WN E+ N+ K L
Sbjct: 206 ---IEKALKARLVYRSPHMNRSV--SFEYMNRQLVWNEFSEMLLLLLPLLNSSAVKNILS 260
Query: 204 TFVKKPPRSRSTTTYKTVCPRCGGFPTNPYQIACCRANYCYVCVVK---ALEWSMCDACG 260
F K +S ST CP C P P C+ YCY C+ + C C
Sbjct: 261 PFAKD--KSSSTKEDTVTCPICQVDPAIPXIALPCQHRYCYYCIRTRCASAASFRCLRCN 318
>ref|XP_368589.1| hypothetical protein MGG_00655 [Magnaporthe grisea 70-15]
gb|EDK02709.1| hypothetical protein MGG_00655 [Magnaporthe grisea 70-15]
Length = 498
Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats.
Identities = 69/347 (19%), Positives = 106/347 (30%), Gaps = 109/347 (31%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEH-----------KEEWELALNTVVFMCATR 51
RV Q+D+ LD+EL GQ S+ + E LAL V+F
Sbjct: 76 RVGQVDAELLDEELLGQLRSQVSEGLRYLGGGGGGSRLGDDWAPEILLALRAVLFK---- 131
Query: 52 FLPHYGSSCTYGSALSGVVF-------------QCRKRTLYV-VTVLAGYVWKKITHIIF 97
L + TYG+AL + + ++ LY VTV YVW K +
Sbjct: 132 -LTIWDHDATYGAALQNLKYTDARNTGSVPVPPSRLQKALYGTVTVCGKYVWTKWEDWLI 190
Query: 98 NGPHCGNQM--------MWLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAF 149
+ + +L + + ++ + +F+ FL + + L R
Sbjct: 191 DQDNGAYDSQQARPVVQRLSRLTELASNIHAAGALVSFMAFLIN-----GRYRTLLDRIL 245
Query: 150 NVHSTRLIRDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFSNTLLTK-----RGLLT 204
+ +A S EY NRQL+W+A E L R +T
Sbjct: 246 RMR----------LAPPTSQVSREVSFEYLNRQLVWHAFTEFLLFVLPLVGINRWRKWIT 295
Query: 205 FVKKPPRSRSTTTY------------------KTVCPRC--------------------- 225
+ + T + C C
Sbjct: 296 RTWRRTKDAITAGTGGEGEEGGEKKGEFAFLPERTCAICYQDQNSGANTEEEILAAAAAS 355
Query: 226 -------GGFPTNPYQIACCRANYCYVCVVKALEWS-----MCDACG 260
TNPY+ C YC+VC+ LE +C CG
Sbjct: 356 SGVIGSAQTDITNPYETLPCGCIYCFVCLATRLEREEGDGWVCLRCG 402
Searching..................................................done
Results from round 3
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
ref|NP_012325.1| RING-finger peroxin, peroxisomal membrane ... 293 9e-78
dbj|BAE27238.1| unnamed protein product [Mus musculus] 272 3e-71
gb|EDL05216.1| peroxisomal membrane protein 3, isoform CRA_... 271 5e-71
ref|XP_001490672.1| PREDICTED: similar to Peroxisome assemb... 270 1e-70
ref|NP_033020.2| peroxin 2 [Mus musculus] >gi|2623264|gb|AA... 270 1e-70
ref|NP_001093818.1| peroxin 2 [Bos taurus] >gi|151554728|gb... 267 4e-70
sp|P24392|PEX2_RAT Peroxisome assembly factor 1 (PAF-1) (Pe... 267 6e-70
ref|NP_000309.1| peroxin 2 [Homo sapiens] >gi|121114290|ref... 267 6e-70
gb|ABZ92521.1| peroxisomal membrane protein 3, 35kDa (Zellw... 267 6e-70
ref|NP_058930.1| peroxin 2 [Rattus norvegicus] >gi|1109648|... 266 1e-69
gb|AAH00661.1| Peroxisomal membrane protein 3, 35kDa (Zellw... 266 1e-69
ref|XP_544136.2| PREDICTED: similar to Peroxisome assembly ... 265 2e-69
gb|EAW87052.1| peroxisomal membrane protein 3, 35kDa (Zellw... 264 6e-69
sp|P55098|PEX2_MOUSE Peroxisome assembly factor 1 (PAF-1) (... 262 2e-68
ref|XP_001377812.1| PREDICTED: similar to Peroxisome assemb... 261 3e-68
sp|Q06438|PEX2_CRIGR Peroxisome assembly factor 1 (PAF-1) (... 252 2e-65
ref|NP_001008454.1| peroxin 2 [Gallus gallus] >gi|53127700|... 249 1e-64
ref|XP_001816880.1| hypothetical protein [Aspergillus oryza... 238 3e-61
ref|XP_964597.1| peroxisomal biogenesis factor 2 [Neurospor... 236 1e-60
ref|NP_982853.1| ABL094Wp [Ashbya gossypii ATCC 10895] >gi|... 236 2e-60
ref|XP_519817.2| PREDICTED: peroxisomal membrane protein 3 ... 236 2e-60
ref|XP_001265299.1| peroxisome biosynthesis protein (Peroxi... 235 2e-60
gb|EEH42793.1| peroxisomal biogenesis factor 2 [Paracoccidi... 234 5e-60
ref|NP_001016841.1| peroxin 2 [Xenopus tropicalis] >gi|8927... 234 5e-60
ref|XP_001220945.1| hypothetical protein CHGG_01724 [Chaeto... 233 1e-59
ref|XP_750106.1| peroxisome biosynthesis protein (Peroxin-2... 233 1e-59
ref|XP_001269799.1| peroxisome biosynthesis protein (Peroxi... 232 2e-59
ref|XP_001398873.1| hypothetical protein An18g04150 [Asperg... 231 4e-59
gb|EEH34726.1| peroxisomal biogenesis factor 2 [Paracoccidi... 230 7e-59
ref|XP_447524.1| hypothetical protein CAGL0I06292g [Candida... 227 6e-58
ref|XP_001646918.1| hypothetical protein Kpol_2000p24 [Vand... 227 7e-58
ref|XP_661660.1| hypothetical protein AN4056.2 [Aspergillus... 226 1e-57
ref|XP_368589.1| hypothetical protein MGG_00655 [Magnaporth... 226 1e-57
ref|XP_380900.1| hypothetical protein FG00724.1 [Gibberella... 225 2e-57
gb|ABH11413.1| peroxin 2 [Penicillium chrysogenum] 225 2e-57
ref|XP_001540740.1| peroxisomal biogenesis factor 2 [Ajello... 225 3e-57
emb|CAO45868.1| unnamed protein product [Vitis vinifera] 222 3e-56
ref|XP_001212277.1| peroxisomal biogenesis factor 2 [Asperg... 222 3e-56
ref|XP_001912471.1| unnamed protein product [Podospora anse... 221 5e-56
ref|NP_565222.1| TED3 (REVERSAL OF THE DET PHENOTYPE); prot... 220 1e-55
ref|NP_001055075.1| Os05g0275700 [Oryza sativa (japonica cu... 218 3e-55
ref|XP_684073.1| PREDICTED: similar to Peroxisome assembly ... 218 4e-55
gb|AAM61388.1| putative RING finger protein [Arabidopsis th... 218 4e-55
ref|XP_714968.1| peroxisomal import RING finger complex com... 213 8e-54
ref|XP_001559557.1| hypothetical protein BC1G_01713 [Botryo... 213 8e-54
ref|XP_001089931.1| PREDICTED: similar to Peroxisome assemb... 213 1e-53
ref|XP_457905.1| hypothetical protein DEHA0C05720g [Debaryo... 208 3e-52
ref|XP_645304.1| RING Zn finger-containing protein [Dictyos... 205 4e-51
ref|XP_001483143.1| hypothetical protein PGUG_05098 [Pichia... 204 7e-51
ref|XP_001781834.1| predicted protein [Physcomitrella paten... 203 1e-50
gb|EDU43666.1| peroxisomal biogenesis factor 2 [Pyrenophora... 201 3e-50
ref|XP_001202188.1| PREDICTED: similar to peroxisomal membr... 201 3e-50
ref|XP_001593335.1| hypothetical protein SS1G_06257 [Sclero... 200 7e-50
ref|XP_001387892.2| peroxisome assembly protein (Peroxin-2)... 196 1e-48
ref|NP_974183.1| TED3 (REVERSAL OF THE DET PHENOTYPE); prot... 193 2e-47
ref|XP_504845.1| YlPEX2 [Yarrowia lipolytica] >gi|54041949|... 193 2e-47
gb|AAF68113.1|AC010793_8 F20B17.23 [Arabidopsis thaliana] 193 2e-47
ref|XP_001528114.1| conserved hypothetical protein [Loddero... 192 2e-47
gb|AAC49423.1| Pay5p 190 7e-47
ref|XP_001790759.1| hypothetical protein SNOG_00062 [Phaeos... 185 3e-45
gb|AAT97412.1| peroxin 2 [Pichia angusta] 184 7e-45
ref|XP_001650927.1| peroxisomal membrane protein, putative ... 181 5e-44
ref|XP_001837282.1| hypothetical protein CC1G_00418 [Coprin... 180 7e-44
ref|XP_001013694.1| Pex2 / Pex12 amino terminal region fami... 180 8e-44
ref|XP_001245152.1| hypothetical protein CIMG_04593 [Coccid... 178 3e-43
emb|CAF97942.1| unnamed protein product [Tetraodon nigrovir... 178 4e-43
ref|XP_001670253.1| Hypothetical protein CBG06104 [Caenorha... 178 5e-43
sp|Q01964|PEX2_PICPA Peroxisomal biogenesis factor 2 (Perox... 176 1e-42
gb|ACO64229.1| predicted protein [Micromonas sp. RCC299] 175 4e-42
ref|NP_502201.2| PeRoXisome assembly factor family member (... 175 4e-42
ref|XP_820860.1| peroxin-2, putative [Trypanosoma cruzi str... 172 3e-41
gb|AAL29060.2| LD46714p [Drosophila melanogaster] 171 4e-41
ref|XP_001846716.1| peroxisome assembly factor 1 [Culex pip... 171 6e-41
ref|XP_001354095.1| GA20087-PA [Drosophila pseudoobscura] >... 170 9e-41
ref|XP_001565685.1| glycosome import protein [Leishmania br... 170 9e-41
ref|XP_309872.4| AGAP010836-PA [Anopheles gambiae str. PEST... 170 1e-40
ref|XP_001683984.1| glycosome import protein (gim1) [Leishm... 169 2e-40
ref|NP_648210.1| CG7081 CG7081-PA [Drosophila melanogaster]... 169 2e-40
ref|XP_001466263.1| glycosome import protein (gim1) [Leishm... 166 2e-39
emb|CAC59701.1| peroxin-2 [Trypanosoma brucei] 165 4e-39
gb|AAB48828.1| Gim1 [Leishmania donovani] 165 5e-39
gb|EAY97345.1| hypothetical protein OsI_018578 [Oryza sativ... 164 5e-39
ref|XP_843828.1| peroxin-2 [Trypanosoma brucei] >gi|6236026... 164 5e-39
ref|XP_001605507.1| PREDICTED: similar to peroxisomal membr... 163 9e-39
ref|XP_001421023.1| predicted protein [Ostreococcus lucimar... 163 1e-38
gb|EAZ33629.1| hypothetical protein OsJ_017112 [Oryza sativ... 161 4e-38
emb|CAL56641.1| putative peroxisome assembly protein 2 (ISS... 160 7e-38
ref|XP_453090.1| unnamed protein product [Kluyveromyces lac... 160 1e-37
ref|XP_756472.1| hypothetical protein UM00325.1 [Ustilago m... 153 1e-35
emb|CAO02572.1| peroxisomal membrane protein [Kluyveromyces... 140 1e-31
ref|XP_001732474.1| hypothetical protein MGL_0249 [Malassez... 140 1e-31
ref|XP_566502.1| peroxisome assembly protein [Cryptococcus ... 139 3e-31
ref|XP_778153.1| hypothetical protein CNBA1530 [Cryptococcu... 139 3e-31
gb|ACF22776.1| ring finger protein [Brachypodium distachyon] 138 3e-31
ref|XP_001876750.1| predicted protein [Laccaria bicolor S23... 136 1e-30
ref|XP_001625262.1| predicted protein [Nematostella vectens... 136 2e-30
ref|XP_001193457.1| PREDICTED: similar to Peroxisomal membr... 135 3e-30
ref|XP_001657838.1| hypothetical protein AaeL_AAEL006463 [A... 133 1e-29
ref|XP_001237561.2| AGAP010497-PA [Anopheles gambiae str. P... 129 2e-28
gb|AAQ04625.1|AF443186_1 peroxisome protein Pex2 [Paracocci... 128 3e-28
gb|ABQ22826.1| peroxisome assembly factor 1-like protein [C... 120 9e-26
gb|EEH57229.1| predicted protein [Micromonas pusilla CCMP1545] 106 3e-21
ref|XP_001519317.1| PREDICTED: similar to peroxisomal membr... 85 7e-15
ref|NP_587745.1| ubiquitin-protein ligase E3 (predicted) [S... 75 7e-12
emb|CAE51310.1| crgA protein [Blakeslea trispora] 73 3e-11
ref|XP_001741915.1| ariadne RING finger, putative [Entamoeb... 68 5e-10
ref|XP_001765135.1| SNF2 family DNA-dependent ATPase [Physc... 68 5e-10
emb|CAB61339.2| carotenoid regulatory protein [Mucor circin... 67 1e-09
emb|CAC83819.1| CrgA protein [Expression vector pEUKA4-crgA] 67 1e-09
ref|NP_508904.2| C26B9.6 [Caenorhabditis elegans] >gi|34366... 65 5e-09
ref|XP_974586.1| PREDICTED: similar to constitutive photomo... 64 7e-09
ref|XP_001844371.1| E3 ubiquitin-ligase protein COP1 [Culex... 64 8e-09
emb|CAL53461.1| FOG: FHA domain (ISS) [Ostreococcus tauri] 63 2e-08
emb|CAO18224.1| unnamed protein product [Vitis vinifera] 63 3e-08
ref|XP_001026980.1| DNA repair helicase (rad3) [Tetrahymena... 62 5e-08
ref|NP_001071934.1| zinc finger protein [Ciona intestinalis... 58 5e-07
gb|ACO65879.1| predicted protein [Micromonas sp. RCC299] 56 2e-06
gb|ACO61580.1| predicted protein [Micromonas sp. RCC299] 56 2e-06
Sequences not found previously or not previously below threshold:
ref|XP_001850439.1| peroxisome assembly protein 12 [Culex p... 90 2e-16
ref|XP_001667669.1| Hypothetical protein CBG22172 [Caenorha... 62 4e-08
ref|XP_454701.1| unnamed protein product [Kluyveromyces lac... 60 2e-07
ref|XP_657287.2| zinc finger protein, putative [Entamoeba h... 59 2e-07
ref|XP_001418208.1| predicted protein [Ostreococcus lucimar... 58 1e-06
ref|NP_196132.2| SNF2 domain-containing protein / helicase ... 56 2e-06
ref|NP_001083011.1| hypothetical protein LOC100037391 [Dani... 56 2e-06
sp|Q9FF61|SM3L1_ARATH Putative SWI/SNF-related matrix-assoc... 56 2e-06
ref|XP_697907.2| PREDICTED: similar to constitutive photomo... 56 2e-06
ref|XP_447681.1| hypothetical protein CAGL0I09988g [Candida... 55 4e-06
ref|NP_014587.1| Nuclear protein, putative RNA polymerase I... 55 5e-06
gb|EDN63821.1| pob3/spt16 histone associated protein [Sacch... 55 5e-06
ref|XP_001332118.1| PREDICTED: similar to constitutive phot... 55 5e-06
ref|XP_967344.1| PREDICTED: similar to Peroxisome assembly ... 55 5e-06
ref|XP_001794456.1| hypothetical protein SNOG_03911 [Phaeos... 55 6e-06
ref|XP_644602.1| MEK1 interacting protein 1 [Dictyostelium ... 55 6e-06
emb|CAG10910.1| unnamed protein product [Tetraodon nigrovir... 55 7e-06
gb|ABN08552.1| SNF2-related; Zinc finger, RING-type; ATP-re... 54 8e-06
ref|XP_457901.1| hypothetical protein DEHA0C05610g [Debaryo... 54 8e-06
gb|EDU45409.1| conserved hypothetical protein [Pyrenophora ... 54 8e-06
ref|XP_001358810.1| GA12398-PA [Drosophila pseudoobscura] >... 54 1e-05
gb|AAM21558.1|AF446007_1 MEK1 interacting protein 1 [Dictyo... 54 1e-05
ref|XP_001347124.1| Peroxisome assembly protein, putative [... 54 1e-05
ref|NP_001016199.1| ring finger and WD repeat domain 2 [Xen... 54 1e-05
gb|AAH20845.1| RFWD2 protein [Homo sapiens] 54 1e-05
ref|XP_648541.1| zinc finger domain containing protein [Ent... 54 1e-05
ref|XP_001386438.2| associated with histones/Spt16/Pob3 [Pi... 54 1e-05
gb|AAI61699.1| Unknown (protein for IMAGE:5537244) [Xenopus... 54 1e-05
ref|XP_001873461.1| predicted protein [Laccaria bicolor S23... 54 1e-05
ref|XP_001691622.1| predicted protein [Chlamydomonas reinha... 54 1e-05
ref|XP_001104796.1| PREDICTED: similar to ring finger and W... 53 2e-05
ref|XP_001643793.1| hypothetical protein Kpol_480p22 [Vande... 53 2e-05
ref|NP_071902.2| ring finger and WD repeat domain 2 isoform... 53 2e-05
ref|NP_001001740.1| ring finger and WD repeat domain 2 isof... 53 2e-05
ref|XP_001104719.1| PREDICTED: similar to ring finger and W... 53 2e-05
ref|XP_001153038.1| PREDICTED: ring finger and WD repeat do... 53 2e-05
ref|NP_651214.1| CG13605 CG13605-PA [Drosophila melanogaste... 53 2e-05
gb|AAV36929.1| LP20373p [Drosophila melanogaster] 53 2e-05
ref|XP_001356739.1| GA17579-PA [Drosophila pseudoobscura] >... 53 2e-05
ref|XP_537181.2| PREDICTED: similar to constitutive photomo... 53 2e-05
gb|EAW90999.1| ring finger and WD repeat domain 2, isoform ... 53 2e-05
ref|XP_001401553.1| hypothetical protein An04g01850 [Asperg... 53 2e-05
ref|XP_001483148.1| hypothetical protein PGUG_05103 [Pichia... 53 2e-05
ref|XP_001271640.1| RING finger domain protein [Aspergillus... 53 2e-05
ref|XP_993328.1| PREDICTED: similar to constitutive photomo... 53 3e-05
ref|XP_426628.2| PREDICTED: similar to constitutive photomo... 53 3e-05
ref|NP_001096726.1| ring finger and WD repeat domain 2 [Bos... 53 3e-05
gb|EDM09451.1| similar to constitutive photomorphogenic pro... 53 3e-05
ref|NP_036061.1| ring finger and WD repeat domain 2 [Mus mu... 53 3e-05
ref|YP_053107.1| ubiquitin E3 ligase ICP0 [Equid herpesviru... 53 3e-05
ref|XP_001676713.1| Hypothetical protein CBG14665 [Caenorha... 53 3e-05
dbj|BAD27395.1| transactivator protein [Equid herpesvirus 1] 53 3e-05
dbj|BAD91106.1| transcriptional activator [Equid herpesviru... 53 3e-05
dbj|BAD91102.1| transcriptional activator [Equid herpesviru... 53 3e-05
dbj|BAD91104.1| transcriptional activator [Equid herpesviru... 53 3e-05
dbj|BAD91098.1| transcriptional activator [Equid herpesviru... 53 3e-05
dbj|BAD91096.1| transcriptional activator [Equid herpesviru... 53 3e-05
gb|AAI58003.1| Ring finger and WD repeat domain 2 [Mus musc... 53 3e-05
gb|AAB63316.1| contains a deletion of 399 base pairs as com... 53 3e-05
ref|XP_001602143.1| PREDICTED: hypothetical protein [Nasoni... 53 3e-05
ref|XP_001479473.1| PREDICTED: similar to constitutive phot... 53 3e-05
gb|EEH53643.1| predicted protein [Micromonas pusilla CCMP1545] 53 3e-05
ref|XP_001484401.1| hypothetical protein PGUG_03782 [Pichia... 53 3e-05
gb|AAM48370.1| LD44641p [Drosophila melanogaster] 53 3e-05
ref|XP_001223204.1| hypothetical protein CHGG_03990 [Chaeto... 53 3e-05
ref|NP_505917.2| C55A6.1 [Caenorhabditis elegans] >gi|58081... 53 3e-05
ref|NP_045280.1| ubiquitin E3 ligase ICP0 [Equid herpesviru... 52 4e-05
ref|XP_001420503.1| predicted protein [Ostreococcus lucimar... 52 4e-05
ref|XP_001306975.1| hypothetical protein TVAG_150920 [Trich... 52 4e-05
ref|NP_740943.1| Y105E8A.14 [Caenorhabditis elegans] 52 4e-05
emb|CAD21663.2| Hypothetical protein Y105E8A.14 [Caenorhabd... 52 4e-05
ref|XP_001322164.1| hypothetical protein TVAG_482150 [Trich... 52 4e-05
ref|NP_608546.1| CG3639 CG3639-PA [Drosophila melanogaster]... 52 4e-05
ref|XP_001310832.1| hypothetical protein TVAG_059670 [Trich... 52 4e-05
ref|XP_001373596.1| PREDICTED: similar to constitutive phot... 52 5e-05
ref|XP_001463446.1| hypothetical protein, conserved [Leishm... 52 5e-05
ref|NP_986450.1| AGL217Wp [Ashbya gossypii ATCC 10895] >gi|... 52 5e-05
dbj|BAD08744.1| unknown protein [Oryza sativa Japonica Grou... 52 5e-05
gb|EAZ43407.1| hypothetical protein OsJ_026890 [Oryza sativ... 52 5e-05
ref|XP_637973.1| hypothetical protein DDBDRAFT_0218752 [Dic... 52 5e-05
ref|XP_001345325.1| PREDICTED: similar to bloodthirsty [Dan... 52 5e-05
ref|XP_001681151.1| hypothetical protein, conserved [Leishm... 52 5e-05
ref|XP_001382882.1| hypothetical protein PICST_54919 [Pichi... 52 6e-05
gb|EDM09450.1| similar to constitutive photomorphogenic pro... 52 6e-05
ref|XP_001699170.1| hypothetical protein CHLREDRAFT_177885 ... 51 6e-05
ref|NP_189307.2| zinc finger (C3HC4-type RING finger) famil... 51 6e-05
gb|EEH47990.1| predicted protein [Paracoccidioides brasilie... 51 7e-05
ref|XP_001704766.1| Zinc finger domain [Giardia lamblia ATC... 51 7e-05
ref|XP_772319.1| hypothetical protein CNBL1870 [Cryptococcu... 51 7e-05
emb|CAA66822.1| hypothetical protein [Arabidopsis thaliana] 51 7e-05
ref|XP_390004.1| hypothetical protein FG09828.1 [Gibberella... 51 7e-05
ref|XP_001740793.1| hypothetical protein EDI_336040 [Entamo... 51 8e-05
ref|XP_504805.1| hypothetical protein [Yarrowia lipolytica]... 51 8e-05
ref|XP_001493775.1| PREDICTED: similar to PCGF5 protein [Eq... 51 9e-05
ref|XP_628496.1| RING finger protein [Cryptosporidium parvu... 51 9e-05
dbj|BAB22061.1| unnamed protein product [Mus musculus] 51 9e-05
ref|XP_668248.1| zinc finger protein [Cryptosporidium homin... 51 9e-05
ref|XP_001429842.1| hypothetical protein GSPATT00005690001 ... 51 9e-05
ref|XP_001873307.1| predicted protein [Laccaria bicolor S23... 51 1e-04
gb|AAF87890.1|AC012561_23 Similar tp transcription factors ... 51 1e-04
gb|AAD50036.1|AC007980_1 Similar to transcription factors [... 51 1e-04
ref|NP_564568.1| SNF2 domain-containing protein / helicase ... 51 1e-04
gb|AAU14277.1| COP1-like protein [Ostreococcus tauri] 51 1e-04
ref|XP_001829342.1| hypothetical protein CC1G_00521 [Coprin... 51 1e-04
emb|CAL53135.1| COP1-like protein (ISS) [Ostreococcus tauri] 51 1e-04
dbj|BAF83920.1| unnamed protein product [Homo sapiens] 51 1e-04
ref|XP_001060464.1| PREDICTED: similar to polycomb group ri... 51 1e-04
ref|XP_395333.3| PREDICTED: similar to citrate synthase [Ap... 51 1e-04
ref|XP_001199408.1| PREDICTED: similar to PDZRN3 protein [S... 51 1e-04
ref|XP_001514261.1| PREDICTED: similar to ring finger and W... 51 1e-04
ref|XP_534300.2| PREDICTED: similar to SWI/SNF-related matr... 51 1e-04
ref|XP_001080543.1| PREDICTED: similar to polycomb group ri... 50 1e-04
ref|XP_422114.2| PREDICTED: similar to rhysin 2 [Gallus gal... 50 1e-04
ref|XP_001431974.1| hypothetical protein GSPATT00034052001 ... 50 1e-04
ref|XP_001010127.2| zinc finger protein, putative [Tetrahym... 50 1e-04
ref|NP_083784.1| polycomb group ring finger 5 [Mus musculus... 50 1e-04
gb|EDL41769.1| polycomb group ring finger 5, isoform CRA_b ... 50 1e-04
ref|XP_001502796.1| PREDICTED: similar to PCGF5 protein [Eq... 50 1e-04
ref|XP_521559.2| PREDICTED: polycomb group ring finger 5 is... 50 2e-04
ref|XP_001897248.1| RING zinc finger protein [Brugia malayi... 50 2e-04
ref|XP_001367374.1| PREDICTED: similar to PCGF5 protein [Mo... 50 2e-04
ref|XP_001673762.1| Hypothetical protein CBG23202 [Caenorha... 50 2e-04
ref|XP_001565413.1| hypothetical protein LbrM24_V2.1490 [Le... 50 2e-04
ref|XP_001565414.1| hypothetical protein LbrM24_V2.1500 [Le... 50 2e-04
ref|NP_001046958.1| Os02g0516600 [Oryza sativa (japonica cu... 50 2e-04
ref|XP_001877406.1| predicted protein [Laccaria bicolor S23... 50 2e-04
ref|NP_594437.1| ubiquitin-protein ligase E3 (predicted) [S... 50 2e-04
gb|AAM64667.1| putative peroxisome assembly protein PER8 [A... 50 2e-04
gb|EAY86041.1| hypothetical protein OsI_007274 [Oryza sativ... 50 2e-04
ref|NP_565621.1| PEX10 (PEROXIN 10); protein binding / zinc... 50 2e-04
ref|XP_001491667.1| PREDICTED: similar to Helicase-like tra... 50 2e-04
ref|XP_001748213.1| predicted protein [Monosiga brevicollis... 50 2e-04
ref|NP_001099948.1| helicase-like transcription factor [Rat... 50 2e-04
gb|EAZ23220.1| hypothetical protein OsJ_006703 [Oryza sativ... 50 2e-04
ref|XP_646455.1| hypothetical protein DDBDRAFT_0190725 [Dic... 50 2e-04
gb|AAN05420.1| putative RING protein [Populus x canescens] 50 2e-04
ref|XP_001442750.1| hypothetical protein GSPATT00001557001 ... 50 2e-04
ref|XP_637452.1| hypothetical protein DDBDRAFT_0187224 [Dic... 50 2e-04
ref|XP_001060520.1| PREDICTED: similar to polycomb group ri... 50 2e-04
ref|XP_001251503.1| PREDICTED: hypothetical protein LOC5289... 50 2e-04
ref|XP_001908491.1| unnamed protein product [Podospora anse... 50 2e-04
emb|CAB87983.1| Pex10p [Arabidopsis thaliana] 50 2e-04
ref|NP_003062.2| helicase-like transcription factor [Homo s... 50 2e-04
gb|AAH44659.1| Helicase-like transcription factor [Homo sap... 50 2e-04
gb|AAA67436.1| ATPase 50 2e-04
ref|XP_001138277.1| PREDICTED: SWI/SNF-related matrix-assoc... 50 2e-04
ref|XP_516811.2| PREDICTED: SWI/SNF-related matrix-associat... 50 2e-04
emb|CAD10805.1| SWI/SNF related, matrix associated, actin d... 50 2e-04
ref|NP_001071448.1| polycomb group ring finger 5 [Bos tauru... 50 2e-04
ref|XP_001306653.1| hypothetical protein TVAG_354620 [Trich... 50 2e-04
emb|CAA86572.1| helicase-like transcription factor [Homo sa... 50 2e-04
gb|ABZ92233.1| helicase-like transcription factor [syntheti... 50 2e-04
emb|CAA86571.1| helicase-like transcription factor [Homo sa... 50 2e-04
dbj|BAD92289.1| SWI/SNF-related matrix-associated actin-dep... 50 2e-04
ref|XP_001080537.1| PREDICTED: similar to polycomb group ri... 50 2e-04
ref|NP_001061057.1| Os08g0162400 [Oryza sativa (japonica cu... 50 2e-04
gb|EAZ05689.1| hypothetical protein OsI_026921 [Oryza sativ... 50 2e-04
gb|AAH18533.2| Ring finger and WD repeat domain 3 [Mus musc... 50 2e-04
ref|NP_954951.1| ubiquitin E3 ligase ICP0 [Bovine herpesvir... 50 2e-04
ref|NP_188635.1| SNF2 domain-containing protein / helicase ... 50 2e-04
ref|XP_001496466.1| PREDICTED: similar to PCGF5 protein [Eq... 50 2e-04
gb|AAP06153.1| similar to GenBank Accession Number AY070592... 50 2e-04
gb|AAW26086.1| SJCHGC09082 protein [Schistosoma japonicum] 50 2e-04
ref|XP_857715.1| PREDICTED: similar to polycomb group ring ... 49 2e-04
gb|EEH58225.1| predicted protein [Micromonas pusilla CCMP1545] 49 2e-04
gb|EDM13184.1| rCG48011 [Rattus norvegicus] 49 2e-04
ref|XP_421668.1| PREDICTED: similar to PCGF5 protein [Gallu... 49 3e-04
ref|XP_001480167.1| PREDICTED: hypothetical protein isoform... 49 3e-04
ref|XP_857872.1| PREDICTED: similar to polycomb group ring ... 49 3e-04
gb|EDL41768.1| polycomb group ring finger 5, isoform CRA_a ... 49 3e-04
ref|XP_001275345.1| ATP-dependent protease (CrgA), putative... 49 3e-04
pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuc... 49 3e-04
ref|XP_001144756.1| PREDICTED: polycomb group ring finger 5... 49 3e-04
sp|P29836|ICP0_BHV1K Trans-acting transcriptional protein I... 49 3e-04
ref|NP_045363.1| ubiquitin E3 ligase ICP0 [Bovine herpesvir... 49 3e-04
ref|NP_001045260.1| Os01g0926200 [Oryza sativa (japonica cu... 49 3e-04
ref|XP_001801432.1| hypothetical protein SNOG_11188 [Phaeos... 49 3e-04
ref|XP_001457187.1| hypothetical protein GSPATT00022963001 ... 49 3e-04
ref|XP_001434306.1| hypothetical protein GSPATT00036040001 ... 49 3e-04
ref|NP_115749.2| polycomb group ring finger 5 [Homo sapiens... 49 3e-04
gb|AAB71480.1| Similar to transcription factor gb|Z46606|16... 49 3e-04
ref|NP_176309.2| EDA16 (embryo sac development arrest 16); ... 49 3e-04
>ref|NP_012325.1| RING-finger peroxin, peroxisomal membrane protein with a C-terminal
zinc-binding RING domain, forms translocation subcomplex
with Pex10p and Pex12p which functions in peroxisomal
matrix protein import; Pex2p [Saccharomyces cerevisiae]
sp|P32800|PEX2_YEAST Peroxisomal biogenesis factor 2 (Peroxin-2) (Peroxisomal protein
PAS5) (Protein CRT1)
gb|AAB36836.1| pas5 [Saccharomyces cerevisiae]
emb|CAA84000.1| ORF [Saccharomyces cerevisiae]
emb|CAA89508.1| PAS5 [Saccharomyces cerevisiae]
gb|EDN63181.1| peroxin [Saccharomyces cerevisiae YJM789]
Length = 271
Score = 293 bits (750), Expect = 9e-78, Method: Composition-based stats.
Identities = 271/271 (100%), Positives = 271/271 (100%)
Query: 1 MSRVAQLDSIALDKELYGQFWSEFNAAFNTSEHKEEWELALNTVVFMCATRFLPHYGSSC 60
MSRVAQLDSIALDKELYGQFWSEFNAAFNTSEHKEEWELALNTVVFMCATRFLPHYGSSC
Sbjct: 1 MSRVAQLDSIALDKELYGQFWSEFNAAFNTSEHKEEWELALNTVVFMCATRFLPHYGSSC 60
Query: 61 TYGSALSGVVFQCRKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMMWLKLYKWVNLLYH 120
TYGSALSGVVFQCRKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMMWLKLYKWVNLLYH
Sbjct: 61 TYGSALSGVVFQCRKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMMWLKLYKWVNLLYH 120
Query: 121 GCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQN 180
GCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQN
Sbjct: 121 GCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQN 180
Query: 181 RQLLWNALLELFSNTLLTKRGLLTFVKKPPRSRSTTTYKTVCPRCGGFPTNPYQIACCRA 240
RQLLWNALLELFSNTLLTKRGLLTFVKKPPRSRSTTTYKTVCPRCGGFPTNPYQIACCRA
Sbjct: 181 RQLLWNALLELFSNTLLTKRGLLTFVKKPPRSRSTTTYKTVCPRCGGFPTNPYQIACCRA 240
Query: 241 NYCYVCVVKALEWSMCDACGSSGRLTASPVY 271
NYCYVCVVKALEWSMCDACGSSGRLTASPVY
Sbjct: 241 NYCYVCVVKALEWSMCDACGSSGRLTASPVY 271
>dbj|BAE27238.1| unnamed protein product [Mus musculus]
Length = 305
Score = 272 bits (695), Expect = 3e-71, Method: Composition-based stats.
Identities = 61/290 (21%), Positives = 106/290 (36%), Gaps = 45/290 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ LDK L WS+F F+ + +E + +++ RF Y +
Sbjct: 16 RISQLDALELDKALEQLVWSQFTQCFHGFKPGLLARFEPEVKAFLWLFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++ ++ Y V + G ++ + +F H +
Sbjct: 75 TVGQSVLNIQYKNDSSLNLIYQPPSKTQKLWYAVCTIGGKWLEERCYDLFRNRHLASFGK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ ++ L ++ NFL FL F + R +HS
Sbjct: 135 AKQFMNFLVGLLKLGELINFLIFL-----QKGKFATLTERLLGIHSVFCKP--------- 180
Query: 168 YSNSVFAGLEYQNRQLLWNALLEL--FSNTLLTKRGLL--------TFVKKPPRSRSTTT 217
N G EY NR+LLW+ E F L+ + L + +
Sbjct: 181 -QNMREVGFEYMNRELLWHGFAEFLIFLLPLINIQKLKAKLSSWCIPLTGAAGHDSTLGS 239
Query: 218 YKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWS---MCDACGSSGR 264
C CG +PT P+ I C +CY CV + + C CG+
Sbjct: 240 SGKECALCGEWPTMPHTIG-CEHVFCYYCVKSSFLFDIYFTCPKCGTEVH 288
>gb|EDL05216.1| peroxisomal membrane protein 3, isoform CRA_b [Mus musculus]
Length = 307
Score = 271 bits (693), Expect = 5e-71, Method: Composition-based stats.
Identities = 60/290 (20%), Positives = 106/290 (36%), Gaps = 45/290 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 18 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKAFLWLFLWRFTI-YSKNA 76
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++ ++ Y V + G ++ + +F H +
Sbjct: 77 TVGQSVLNIQYKNDSSLNLIYQPPSKTQKLWYAVCTIGGKWLEERCYDLFRNRHLASFGK 136
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ ++ L ++ NFL FL F + R +HS
Sbjct: 137 AKQFMNFLVGLLKLGELINFLIFL-----QKGKFATLTERLLGIHSVFCKP--------- 182
Query: 168 YSNSVFAGLEYQNRQLLWNALLEL--FSNTLLTKRGLL--------TFVKKPPRSRSTTT 217
N G EY NR+LLW+ E F L+ + L + +
Sbjct: 183 -QNMREVGFEYMNRELLWHGFAEFLIFLLPLINIQKLKAKLSSWCIPLTGAAGHDSTLGS 241
Query: 218 YKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWS---MCDACGSSGR 264
C CG +PT P+ I C +CY CV + + C CG+
Sbjct: 242 SGKECALCGEWPTMPHTIG-CEHVFCYYCVKSSFLFDIYFTCPKCGTEVH 290
>ref|XP_001490672.1| PREDICTED: similar to Peroxisome assembly factor 1 (PAF-1)
(Peroxin-2) (Peroxisomal membrane protein 3) (35 kDa
peroxisomal membrane protein) (RING finger protein 72)
[Equus caballus]
Length = 305
Score = 270 bits (690), Expect = 1e-70, Method: Composition-based stats.
Identities = 62/290 (21%), Positives = 107/290 (36%), Gaps = 45/290 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKAFLWLFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++ ++ Y V + G ++ + +F PH +
Sbjct: 75 TVGQSVLNIQYKNDFSPNPRYQPPSRNQKLWYAVCTIGGKWLEERCYDLFRNPHLASFRK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ +V + + NFL FL F + R + S
Sbjct: 135 AKQCVNFVVGILKLGGLINFLIFL-----QRGKFATLTERLLGIRSVFCKP--------- 180
Query: 168 YSNSVFAGLEYQNRQLLWNALLEL--FSNTLLTKRGLL--------TFVKKPPRSRSTTT 217
N G EY NR++LW+ E F L+ + L P + T
Sbjct: 181 -QNIREVGFEYMNREILWHGFAEFLIFLLPLINIQKLKAKLSSWCIPLTGAPNGDSTLAT 239
Query: 218 YKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGSSGR 264
C CG +PT P+ I C +CY CV + + M C CG+
Sbjct: 240 SGRQCSLCGEWPTMPHTIG-CEHIFCYYCVKSSFLYDMYFTCPKCGTEVH 288
>ref|NP_033020.2| peroxin 2 [Mus musculus]
gb|AAB91465.1| peroxisome membrane protein PEX2 [Mus musculus]
gb|AAH12404.1| Peroxisomal membrane protein 3 [Mus musculus]
dbj|BAE30130.1| unnamed protein product [Mus musculus]
dbj|BAE31130.1| unnamed protein product [Mus musculus]
gb|EDL05215.1| peroxisomal membrane protein 3, isoform CRA_a [Mus musculus]
Length = 305
Score = 270 bits (690), Expect = 1e-70, Method: Composition-based stats.
Identities = 60/290 (20%), Positives = 106/290 (36%), Gaps = 45/290 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKAFLWLFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++ ++ Y V + G ++ + +F H +
Sbjct: 75 TVGQSVLNIQYKNDSSLNLIYQPPSKTQKLWYAVCTIGGKWLEERCYDLFRNRHLASFGK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ ++ L ++ NFL FL F + R +HS
Sbjct: 135 AKQFMNFLVGLLKLGELINFLIFL-----QKGKFATLTERLLGIHSVFCKP--------- 180
Query: 168 YSNSVFAGLEYQNRQLLWNALLEL--FSNTLLTKRGLL--------TFVKKPPRSRSTTT 217
N G EY NR+LLW+ E F L+ + L + +
Sbjct: 181 -QNMREVGFEYMNRELLWHGFAEFLIFLLPLINIQKLKAKLSSWCIPLTGAAGHDSTLGS 239
Query: 218 YKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWS---MCDACGSSGR 264
C CG +PT P+ I C +CY CV + + C CG+
Sbjct: 240 SGKECALCGEWPTMPHTIG-CEHVFCYYCVKSSFLFDIYFTCPKCGTEVH 288
>ref|NP_001093818.1| peroxin 2 [Bos taurus]
gb|AAI48002.1| LOC512677 protein [Bos taurus]
Length = 305
Score = 267 bits (684), Expect = 4e-70, Method: Composition-based stats.
Identities = 63/290 (21%), Positives = 107/290 (36%), Gaps = 45/290 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKAFLWLFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + +Q ++ Y V + G ++ + +F H +
Sbjct: 75 TVGQSVLNIQYQNDLSPNLSYQPPSRNQKLWYAVCTIGGKWLEERCYDLFRNRHIASFRK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ V L + NFL FL F + R +HS
Sbjct: 135 AKQCMNLVVGLLKLGGLINFLIFL-----QRGKFATLTERLLGIHSVFHKP--------- 180
Query: 168 YSNSVFAGLEYQNRQLLWNALLEL--FSNTLLTKRGLL--------TFVKKPPRSRSTTT 217
+ G EY NR+LLW+ E F L+ + L P + + T
Sbjct: 181 -QSVREVGFEYMNRELLWHGFAEFLIFLLPLINVQKLRAKLSSWCVPLTGAPGSNSTLAT 239
Query: 218 YKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGSSGR 264
C CG +PT P+ + C +CY CV + + M C CG+
Sbjct: 240 SGRQCSLCGEWPTMPHTVG-CEHVFCYYCVKSSFLFDMSFTCPKCGTEVH 288
>sp|P24392|PEX2_RAT Peroxisome assembly factor 1 (PAF-1) (Peroxin-2) (Peroxisomal
membrane protein 3)
emb|CAA41054.1| peroxisome assembly factor-1 [Rattus rattus]
dbj|BAA06306.1| peroxisome assembly factor-1 [Rattus norvegicus]
gb|AAH63169.1| Peroxisomal membrane protein 3 [Rattus norvegicus]
gb|EDM01038.1| peroxisomal membrane protein 3, isoform CRA_a [Rattus norvegicus]
gb|EDM01039.1| peroxisomal membrane protein 3, isoform CRA_a [Rattus norvegicus]
gb|EDM01040.1| peroxisomal membrane protein 3, isoform CRA_a [Rattus norvegicus]
prf||1706355A peroxisome assembly factor 1
Length = 305
Score = 267 bits (683), Expect = 6e-70, Method: Composition-based stats.
Identities = 62/290 (21%), Positives = 108/290 (37%), Gaps = 45/290 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKAFLWLFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++ ++ LY V + G ++ + +F H +
Sbjct: 75 TVGQSVLNIQYKNDSSPNPVYQPPSKNQKLLYAVCTIGGRWLEERCYDLFRNRHLASFGK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ +V L ++ NFL FL F + R +HS
Sbjct: 135 AKQCMNFVVGLLKLGELMNFLIFL-----QKGKFATLTERLLGIHSVFCKP--------- 180
Query: 168 YSNSVFAGLEYQNRQLLWNALLEL--FSNTLLTKRGLL--------TFVKKPPRSRSTTT 217
+ G EY NR+LLW+ E F L+ + L + +
Sbjct: 181 -QSMREVGFEYMNRELLWHGFAEFLVFLLPLINIQKLKAKLSSWCIPLTSTAGSDSTLGS 239
Query: 218 YKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGSSGR 264
C CG +PT P+ I C +CY CV + + M C CG+
Sbjct: 240 SGKECALCGEWPTMPHTIG-CEHVFCYYCVKSSFLFDMYFTCPKCGTEVH 288
>ref|NP_000309.1| peroxin 2 [Homo sapiens]
ref|NP_001073336.1| peroxin 2 [Homo sapiens]
sp|P28328|PEX2_HUMAN Peroxisome assembly factor 1 (PAF-1) (Peroxin-2) (Peroxisomal
membrane protein 3) (35 kDa peroxisomal membrane
protein) (RING finger protein 72)
gb|AAF97687.1|AF133826_1 35 kDa peroxisomal membrane protein [Homo sapiens]
gb|AAC12785.1| peroxisome assembly factor-1 [Homo sapiens]
gb|AAA60141.1| peroxisomal membrane protein
gb|AAH05375.1| Peroxisomal membrane protein 3, 35kDa (Zellweger syndrome) [Homo
sapiens]
gb|AAH93043.1| Peroxisomal membrane protein 3, 35kDa (Zellweger syndrome) [Homo
sapiens]
Length = 305
Score = 267 bits (683), Expect = 6e-70, Method: Composition-based stats.
Identities = 62/290 (21%), Positives = 105/290 (36%), Gaps = 45/290 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKACLWVFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++ ++ Y V + G ++ + +F H +
Sbjct: 75 TVGQSVLNIKYKNDFSPNLRYQPPSKNQKIWYAVCTIGGRWLEERCYDLFRNHHLASFGK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ +V L + NFL FL F + R +HS
Sbjct: 135 VKQCVNFVIGLLKLGGLINFLIFL-----QRGKFATLTERLLGIHSVFCKP--------- 180
Query: 168 YSNSVFAGLEYQNRQLLWNALLEL--FSNTLLTKRGLL--------TFVKKPPRSRSTTT 217
N G EY NR+LLW+ E F L+ + L P + T
Sbjct: 181 -QNIREVGFEYMNRELLWHGFAEFLIFLLPLINVQKLKAKLSSWCIPLTGAPNSDNTLAT 239
Query: 218 YKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWS---MCDACGSSGR 264
C CG +PT P+ I C +CY C + + C CG+
Sbjct: 240 SGKECALCGEWPTMPHTIG-CEHIFCYFCAKSSFLFDVYFTCPKCGTEVH 288
>gb|ABZ92521.1| peroxisomal membrane protein 3, 35kDa (Zellweger syndrome)
[synthetic construct]
Length = 305
Score = 267 bits (683), Expect = 6e-70, Method: Composition-based stats.
Identities = 62/290 (21%), Positives = 105/290 (36%), Gaps = 45/290 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKACLWVFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++ ++ Y V + G ++ + +F H +
Sbjct: 75 TVGQSVLNIKYKNDFSPNLRYQPPSKNQKIWYAVCTIGGRWLEERCYDLFRNHHLASFGK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ +V L + NFL FL F + R +HS
Sbjct: 135 VKQCVNFVIGLLKLGGLINFLIFL-----QRGKFATLTERLLGIHSVFCKP--------- 180
Query: 168 YSNSVFAGLEYQNRQLLWNALLEL--FSNTLLTKRGLL--------TFVKKPPRSRSTTT 217
N G EY NR+LLW+ E F L+ + L P + T
Sbjct: 181 -QNIREVGFEYMNRELLWHGFAEFLIFLLPLINVQKLKAKLSSWCIPLTGAPNSDNTLAT 239
Query: 218 YKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWS---MCDACGSSGR 264
C CG +PT P+ I C +CY C + + C CG+
Sbjct: 240 SGKECALCGEWPTMPHTIG-CEHIFCYFCAKSSFLFDVYFTCPKCGTEVH 288
>ref|NP_058930.1| peroxin 2 [Rattus norvegicus]
dbj|BAA06307.1| peroxisome assembly factor-1 [Rattus norvegicus]
Length = 305
Score = 266 bits (680), Expect = 1e-69, Method: Composition-based stats.
Identities = 62/290 (21%), Positives = 108/290 (37%), Gaps = 45/290 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKAFLWLFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++ ++ LY V + G ++ + +F H +
Sbjct: 75 TVGQSVLNIQYKNDSSPNPVYQPPSKNQKLLYAVCTIGGRWLEERCYDLFPNRHLASFGK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ +V L ++ NFL FL F + R +HS
Sbjct: 135 AKQCMNFVVGLLKLGELMNFLIFL-----QKGKFATLTERLLGIHSVFCKP--------- 180
Query: 168 YSNSVFAGLEYQNRQLLWNALLEL--FSNTLLTKRGLL--------TFVKKPPRSRSTTT 217
+ G EY NR+LLW+ E F L+ + L + +
Sbjct: 181 -QSMREVGFEYMNRELLWHGFAEFLVFLLPLINIQKLKAKLSSWCIPLTSTAGSDSTLGS 239
Query: 218 YKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGSSGR 264
C CG +PT P+ I C +CY CV + + M C CG+
Sbjct: 240 SGKECALCGEWPTMPHTIG-CEHVFCYYCVKSSFLFDMYFTCPKCGTEVH 288
>gb|AAH00661.1| Peroxisomal membrane protein 3, 35kDa (Zellweger syndrome) [Homo
sapiens]
Length = 305
Score = 266 bits (680), Expect = 1e-69, Method: Composition-based stats.
Identities = 62/290 (21%), Positives = 104/290 (35%), Gaps = 45/290 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKACLWVFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++ ++ Y V + G ++ + +F H +
Sbjct: 75 TVGQSVLNIKYKNDFSPNLRYQPPSKNQKIWYAVCTIGGRWLEERCYDLFRNHHLASFGK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ +V L + NFL FL F + R +HS
Sbjct: 135 VKQCVNFVIGLLKLGGLINFLIFL-----QRGKFATLTERLLGIHSVFCKP--------- 180
Query: 168 YSNSVFAGLEYQNRQLLWNALLEL--FSNTLLTKRGLL--------TFVKKPPRSRSTTT 217
N G EY NR+LLW+ E F L+ + L P + T
Sbjct: 181 -QNIREVGFEYMNRELLWHGFAEFLIFLLPLINVQKLKAKLSSWCIPLTGAPNSDNTLAT 239
Query: 218 YKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWS---MCDACGSSGR 264
C CG PT P+ I C +CY C + + C CG+
Sbjct: 240 SGKECALCGERPTMPHTIG-CEHIFCYFCAKSSFLFDVYFTCPKCGTEVH 288
>ref|XP_544136.2| PREDICTED: similar to Peroxisome assembly factor-1 (PAF-1)
(Peroxin-2) (Peroxisomal membrane protein 3) (35 kDa
peroxisomal membrane protein) (RING finger protein 72)
[Canis familiaris]
Length = 305
Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats.
Identities = 61/289 (21%), Positives = 106/289 (36%), Gaps = 45/289 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L W++F F+ + +E + ++++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWAQFTQCFHGFKPGLLAHFEPEVKALLWLFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++ ++ Y V + G ++ + +F H +
Sbjct: 75 TVGQSVLNIQYKNDFSPKLRYQPPSKNQKLWYAVCTIGGTWLEERCYDLFRNRHLASFGK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ + L + NFL FL F + R + S
Sbjct: 135 ARQCVNIMVGLLKLGGLINFLIFL-----QRGKFATLTERLLGIRSVFCKP--------- 180
Query: 168 YSNSVFAGLEYQNRQLLWNALLEL--FSNTLLTKRGLL--------TFVKKPPRSRSTTT 217
N G EY NR+LLW+ E F L+ + L P + T
Sbjct: 181 -QNVREVGFEYMNRELLWHGFAEFLIFLLPLINIQKLKAKLSSWCIPLTGAPTSDNTLAT 239
Query: 218 YKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGSSG 263
C CG +PT P+ I C +CY CV + + M C CG+
Sbjct: 240 SGKQCSLCGEWPTMPHTIG-CEHIFCYYCVKSSFLFDMYFTCPKCGTEV 287
>gb|EAW87052.1| peroxisomal membrane protein 3, 35kDa (Zellweger syndrome) [Homo
sapiens]
Length = 305
Score = 264 bits (674), Expect = 6e-69, Method: Composition-based stats.
Identities = 62/290 (21%), Positives = 105/290 (36%), Gaps = 45/290 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKACLWVFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++ ++ Y V + G ++ + +F H +
Sbjct: 75 TVGQSVLNIKYKNDFSPNLRYQPPSKNQKIWYAVCTIGGRWLEERCYDLFRNHHLASFGK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ +V L + NFL FL F + R +HS
Sbjct: 135 VKQCVNFVIGLLKLGGLINFLIFL-----QRGKFATLTERLLGIHSVFCKP--------- 180
Query: 168 YSNSVFAGLEYQNRQLLWNALLEL--FSNTLLTKRGLL--------TFVKKPPRSRSTTT 217
N G EY NR+LLW+ E F L+ + L P + T
Sbjct: 181 -QNICEVGFEYMNRELLWHGFAEFLIFLLPLINVQKLKAKLSSWCIPLTGAPNSDNTLAT 239
Query: 218 YKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWS---MCDACGSSGR 264
C CG +PT P+ I C +CY C + + C CG+
Sbjct: 240 SGKECALCGEWPTMPHTIG-CEHIFCYFCAKSSFLFDVYFTCPKCGTEVH 288
>sp|P55098|PEX2_MOUSE Peroxisome assembly factor 1 (PAF-1) (Peroxin-2) (Peroxisomal
membrane protein 3)
gb|AAA21742.1| peroxisome assembly factor-1
Length = 305
Score = 262 bits (671), Expect = 2e-68, Method: Composition-based stats.
Identities = 62/290 (21%), Positives = 106/290 (36%), Gaps = 45/290 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKAFLWLFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + + ++ LY V + G ++ + +F H +
Sbjct: 75 TVGQSVLNIQHKNDSSPNPVYQPPSKNQKLLYAVCTIGGRWLEERCYDLFRNRHLASFGK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ +V L ++ NFL FL F + R +HS
Sbjct: 135 AKQCMNFVVGLLKLGELMNFLIFL-----QKGKFATLTERLLGIHSVFCKP--------- 180
Query: 168 YSNSVFAGLEYQNRQLLWNALLEL--FSNTLLTKRGLLTF--------VKKPPRSRSTTT 217
N G EY NR+LLW+ E F L+ + L + +
Sbjct: 181 -QNMREVGFEYMNRELLWHGFAEFLIFLLPLINIQKLKAKLSSWCTLCTGAAGHDSTLGS 239
Query: 218 YKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWS---MCDACGSSGR 264
C CG +PT P+ I C +CY CV + + C CG+
Sbjct: 240 SGKECALCGEWPTMPHTIG-CEHVFCYYCVKSSFLFDIYFTCPKCGTEVH 288
>ref|XP_001377812.1| PREDICTED: similar to Peroxisome assembly factor 1 (PAF-1)
(Peroxin-2) (Peroxisomal membrane protein 3) (35 kDa
peroxisomal membrane protein) (RING finger protein 72)
[Monodelphis domestica]
Length = 305
Score = 261 bits (668), Expect = 3e-68, Method: Composition-based stats.
Identities = 62/289 (21%), Positives = 106/289 (36%), Gaps = 45/289 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTHCFHGFKPGLLARLEPEVKAFLWLFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQCR-------------KRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++ ++ Y + + G ++ + +F H +
Sbjct: 75 TVGQSIMNIQYKNNYSQTQKYQPLSKNQKLWYAICTVGGRWLEERCYDLFRNHHLASFYK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ + L + NFL FL F + R + S
Sbjct: 135 IKQCTNLIVGLLKLSSLVNFLIFL-----QKGKFATLTERLLGIRSVFCKP--------- 180
Query: 168 YSNSVFAGLEYQNRQLLWNALLEL--FSNTLLTKRGLL--------TFVKKPPRSRSTTT 217
N G EY NR+LLW+ E F L+ + L F P + T
Sbjct: 181 -QNIREVGFEYMNRELLWHGFAEFLIFLLPLINIQKLKAKLSSWCIPFTGVPNSDVTLAT 239
Query: 218 YKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGSSG 263
+ C CG +PT P+ I C +CY CV + + M C CG+
Sbjct: 240 HGKECSLCGEWPTMPHTIGCV-HVFCYYCVKSSYLFDMYFTCPKCGTEV 287
>sp|Q06438|PEX2_CRIGR Peroxisome assembly factor 1 (PAF-1) (Peroxin-2) (Peroxisomal
membrane protein 3)
emb|CAA78929.1| peroxisome assembly factor 1 [Cricetulus griseus]
dbj|BAA06308.1| peroxisome assembly factor-1 [Cricetulus griseus]
Length = 304
Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats.
Identities = 59/286 (20%), Positives = 104/286 (36%), Gaps = 45/286 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 15 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKACLWLFLWRFTI-YSKNA 73
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G ++ + ++ ++ Y V + G ++ + +F H +
Sbjct: 74 TVGQSVLNIQYKNDFSSNSRYQPPSKNQKLWYAVCTIGGRWLEERCYDLFRNRHLASFGK 133
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ + L ++ NFL FL F + R +HS
Sbjct: 134 VKQCMNVMVGLLKLGELINFLIFL-----QKGKFATLTERLLGIHSVFCKP--------- 179
Query: 168 YSNSVFAGLEYQNRQLLWNALLEL--FSNTLLTKRGLL--------TFVKKPPRSRSTTT 217
N G +Y NR+LLW+ E F L+ + + +
Sbjct: 180 -QNIREVGFDYMNRELLWHGFAEFLIFLLPLINIQKFKAKLSSWCIPLTGAASSDSALAS 238
Query: 218 YKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACG 260
C CG +PT P+ I C +CY CV + + M C CG
Sbjct: 239 SGKECALCGEWPTMPHTIG-CEHVFCYYCVKSSFLFDMYFTCPKCG 283
>ref|NP_001008454.1| peroxin 2 [Gallus gallus]
emb|CAG31179.1| hypothetical protein [Gallus gallus]
Length = 304
Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats.
Identities = 61/290 (21%), Positives = 107/290 (36%), Gaps = 45/290 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F + F+ + E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTSCFHGFKPGVLAHIEPEVKAFLWLLLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQCR-------------KRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMM 107
T G A+ + ++ ++ Y++ + G ++ + +F+ +
Sbjct: 75 TVGQAILNIQYKNNLSQTEKYQPLSKHQKLWYLIFTVGGRWLEERCYDLFSNRQLQSVSK 134
Query: 108 WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEF 167
+ L C + NFL FL F + R + S
Sbjct: 135 IKHYINFGAGLLKLCGLVNFLIFL-----QKGTFATLTERILGIRSVFCKP--------- 180
Query: 168 YSNSVFAGLEYQNRQLLWNALLELF--SNTLLTKRGLL--------TFVKKPPRSRSTTT 217
+ G EY NR+LLW+ E L+ + L P ++ T
Sbjct: 181 -QSVRQVGFEYMNRELLWHGFAEFLIYLLPLINVQKLKLKICSWCFPIANLPNSDKTLAT 239
Query: 218 YKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGSSGR 264
+ VC CG +PT P+ I C +CY C+ + M C CGS
Sbjct: 240 HYKVCSLCGEWPTMPHTIGCS-HVFCYYCIKSNYLFDMYFTCPKCGSEVH 288
>ref|XP_001816880.1| hypothetical protein [Aspergillus oryzae RIB40]
dbj|BAE54878.1| unnamed protein product [Aspergillus oryzae]
Length = 516
Score = 238 bits (608), Expect = 3e-61, Method: Composition-based stats.
Identities = 60/345 (17%), Positives = 107/345 (31%), Gaps = 99/345 (28%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK------EEWELALNTVVFMCATRFLPHY 56
RV Q+D+ LD+EL G + A + E + AL ++F + +
Sbjct: 121 RVGQVDAELLDEELLGLLKGQVGNALKYFGPQAREDWSHEIQFALRAILFKLSI-----W 175
Query: 57 GSSCTYGSALSGVVF--------------QCRKRTLYVVTVLAGYVWKKITHIIFNGP-- 100
+ +YG+AL + + + +K ++TV Y W+K + N
Sbjct: 176 DHNASYGAALQNLKYVDTRSKGPIHSAPTKWQKSLYGLLTVGGRYAWEKWESWLINQEGG 235
Query: 101 ---HCGNQMMWLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLI 157
+ ++ ++ + +FL FL + + + R + T
Sbjct: 236 YDEPSREVRILARMTDLISTTHSIAAFISFLVFLVN-----GRYRTLVDRILRIRLTP-- 288
Query: 158 RDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFSNTLLTK-----RGLLTFVKKPPRS 212
S EY NRQL+W+A E L R ++ + S
Sbjct: 289 --------PSAQASREVSFEYLNRQLVWHAFTEFLLFLLPLVGISRWRRWISRAWRRTMS 340
Query: 213 RSTTTY----------------KTVCPRC----------------------------GGF 228
++ + C C
Sbjct: 341 SIRSSDGDSEEAEKQGELAFLPERTCAICYKASNPESATESEVIAASAASGGILGSAQTD 400
Query: 229 PTNPYQIACCRANYCYVCVVKALEWS-----MCDACGSSGRLTAS 268
TNPY+ C YC+VC+V+ +E +C CG +
Sbjct: 401 ITNPYEAIPCGCVYCFVCLVQKVEGEEGEGWICLRCGEIVKKCKP 445
>ref|XP_964597.1| peroxisomal biogenesis factor 2 [Neurospora crassa OR74A]
gb|EAA35361.1| peroxisomal biogenesis factor 2 [Neurospora crassa OR74A]
Length = 639
Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats.
Identities = 63/345 (18%), Positives = 99/345 (28%), Gaps = 92/345 (26%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK------EEWELALNTVVFMCATRFLPHY 56
RV Q+D+ LD EL ++ A +EW+ + ++ L +
Sbjct: 115 RVGQVDAELLDAELVDLLRTQVGDALKYIGGGVSSTLKDEWDAEI-LLILRAILFKLTIW 173
Query: 57 GSSCTYGSALSGVVF--------------QCRKRTLYVVTVLAGYVWKKITHIIFNGPHC 102
TYG+AL + + + +K VTV Y+W K + +
Sbjct: 174 DHDATYGAALQNLRYTDARKSGPVLQPPSKLQKSLYGFVTVGGKYLWTKWETYLLDHDEA 233
Query: 103 GN------QMMWLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRL 156
+ +L + + +F FL + + L R +
Sbjct: 234 SSYSVEGPNPNIQRLSRLTESIGTFHAFASFASFLVFLL--HGRYRTILDRLLRMRL--- 288
Query: 157 IRDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFSNTLLTK-----RGLLTFVKKPPR 211
A S EY NRQL+W+A E L R L + +
Sbjct: 289 -------APPTSQVSREVSFEYLNRQLVWHAFTEFLLFVLPLVGINRWRRWLARTWRRTK 341
Query: 212 SRSTTTY----------------KTVCPRC---------------------------GGF 228
S TT+ + C C
Sbjct: 342 SMLTTSSTNDPTQNKGGEFAFLPERTCAICYQDQNSAKSEAELMAAASSSSGVVGSAQTD 401
Query: 229 PTNPYQIACCRANYCYVCVVKALEWS-----MCDACGSSGRLTAS 268
TNPY+ C YC+VCV +E C CG +
Sbjct: 402 ITNPYEAMPCGCVYCFVCVATRIEREEGEGWTCLRCGELVKECKP 446
>ref|NP_982853.1| ABL094Wp [Ashbya gossypii ATCC 10895]
gb|AAS50677.1| ABL094Wp [Ashbya gossypii ATCC 10895]
Length = 257
Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats.
Identities = 107/271 (39%), Positives = 154/271 (56%), Gaps = 21/271 (7%)
Query: 1 MSRVAQLDSIALDKELYGQFWSEFNAAFNTSEHKEEWELALNTVVFMCATRFLPHYGSSC 60
MSRVAQLDS+ALD EL+ WSEF + F ++ +EW+L L+T+++ +T
Sbjct: 1 MSRVAQLDSLALDSELHQGIWSEFQSQFKPVKYIDEWQLLLHTLIYHFSTH--TSVAGVS 58
Query: 61 TYGSALSGVVFQCRKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMMWLKLYKWVNLLYH 120
TYGS LSGV ++ K TL++VTVL Y+ KK++ ++ + + KLY+ YH
Sbjct: 59 TYGSQLSGVTYRTSKSTLFLVTVLVRYIHKKLSTLLVR------REGYAKLYRVAAKWYH 112
Query: 121 GCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQN 180
D+ NFL FLA FLSP++R F + R + D FY ++V++GLE+QN
Sbjct: 113 CYDLANFLSFLA-----RPLFLSPIHRLFGIRCVRALDD-----PNFYLSTVYSGLEFQN 162
Query: 181 RQLLWNALLELFSNTLLTKRGLLTFVKKPPRSRSTTTYKTVCPRCGGFPTNPYQIACCRA 240
RQL+WNALLEL + F K+ + T C +C P NPY +CC A
Sbjct: 163 RQLMWNALLELLNANFFNSHF---FSKRSLVKNARPTGPEECAKCRDVPNNPYSTSCCGA 219
Query: 241 NYCYVCVVKALEWSMCDACGSSGRLTASPVY 271
YCYVCV+ +L+ C+ CG+ G +A P+Y
Sbjct: 220 TYCYVCVLISLDIKFCNNCGNRGDFSAIPLY 250
>ref|XP_519817.2| PREDICTED: peroxisomal membrane protein 3 [Pan troglodytes]
Length = 326
Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats.
Identities = 53/269 (19%), Positives = 90/269 (33%), Gaps = 45/269 (16%)
Query: 24 FNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSCTYGSALSGVVFQC-------- 73
F F+ + +E + +++ RF Y + T G ++ + ++
Sbjct: 58 FTQCFHGFKPGLLARFEPEVKACLWVFLWRFTI-YSKNATVGQSVLNIKYKNDFSPNLRY 116
Query: 74 -----RKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMMWLKLYKWVNLLYHGCDVTNFL 128
++ Y V + G ++ + +F + + +V L + NFL
Sbjct: 117 QPPSKNQKIWYAVCTIGGRWLEERCYDLFRNHQLASFGKVKQCVNFVIGLLKLGGLINFL 176
Query: 129 RFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQNRQLLWNAL 188
FL F + R +HS N G EY NR+LLW+
Sbjct: 177 IFL-----QRGKFATLTERLLGIHSVFCKP----------QNIREVGFEYMNRELLWHGF 221
Query: 189 LEL--FSNTLLTKRGLL--------TFVKKPPRSRSTTTYKTVCPRCGGFPTNPYQIACC 238
E F L+ + L P + T C CG +PT P+ I C
Sbjct: 222 AEFLIFLLPLINVQKLKAKLSSWCIPLTGAPNSDNTLATSGKECALCGEWPTMPHTIG-C 280
Query: 239 RANYCYVCVVKALEWSM---CDACGSSGR 264
+CY C + + M C CG+
Sbjct: 281 EHIFCYFCAKSSFLFDMYFTCPKCGTEVH 309
>ref|XP_001265299.1| peroxisome biosynthesis protein (Peroxin-2), putative [Neosartorya
fischeri NRRL 181]
gb|EAW23402.1| peroxisome biosynthesis protein (Peroxin-2), putative [Neosartorya
fischeri NRRL 181]
Length = 479
Score = 235 bits (601), Expect = 2e-60, Method: Composition-based stats.
Identities = 63/343 (18%), Positives = 108/343 (31%), Gaps = 97/343 (28%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK------EEWELALNTVVFMCATRFLPHY 56
RV Q+D+ LD+EL G + A + E + AL ++F + +
Sbjct: 74 RVGQVDAELLDEELLGLLKGQVGNALKYFGPQLREDWSHEIQFALRAILFKLSI-----W 128
Query: 57 GSSCTYGSALSGVVF--------------QCRKRTLYVVTVLAGYVWKKITHIIFN---- 98
+ +YG+AL G+ + + +K ++TV Y W+K +
Sbjct: 129 DHNASYGAALQGLRYVDSRSKGPVHSTPTKWQKSLYGLLTVGGRYAWEKWESWLIGQEGG 188
Query: 99 -GPHCGNQMMWLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLI 157
+ M +L V+ + +FL FL + + + R + T
Sbjct: 189 YEEPSRDVRMLARLTDLVSTTHSIAAFVSFLVFLVN-----GRYRTLIDRILRIRLTP-- 241
Query: 158 RDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFSNTLLTK-----RGLLTFVKKPPRS 212
++ EY NRQL+W+A E L R L+ + S
Sbjct: 242 --------PSAQSAREVSFEYLNRQLVWHAFTEFLLFLLPLVGISRWRRWLSRAWRKTIS 293
Query: 213 RSTTTY----------------KTVCPRC--------------------------GGFPT 230
+ + C C T
Sbjct: 294 AIRSRDDDEDEVEKRGELAFLPERTCAICYKDQNPASTSENDIIAASAGGIVGSAQTDIT 353
Query: 231 NPYQIACCRANYCYVCVVKALEWS-----MCDACGSSGRLTAS 268
NPY+ C YC+VC+V+ +E +C CG +
Sbjct: 354 NPYETVPCGCIYCFVCLVQKVEGEEGEGWICLRCGEIVKKCKP 396
>gb|EEH42793.1| peroxisomal biogenesis factor 2 [Paracoccidioides brasiliensis
Pb18]
Length = 488
Score = 234 bits (597), Expect = 5e-60, Method: Composition-based stats.
Identities = 61/346 (17%), Positives = 105/346 (30%), Gaps = 100/346 (28%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTS------EHKEEWELALNTVVFMCATRFLPHY 56
RV Q+D+ LD+EL + + E + AL ++F + +
Sbjct: 71 RVGQVDAELLDEELLTLLKGQVGEGLKYFGSHIKEDWTHEIQFALRAILFKLS-----VW 125
Query: 57 GSSCTYGSALSGVVFQ-------------CRKRTLYVV-TVLAGYVWKKITHIIFNGPHC 102
+ +YG+AL + + ++ LY + TV Y+W K + +
Sbjct: 126 DHNASYGAALQNLKYTDSRQKGPTLSDPTKSQKALYGLFTVGGRYIWDKWESWLIDQEGG 185
Query: 103 GNQMM-----WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLI 157
++ ++ ++ + +FL FL + + + R +
Sbjct: 186 YDEPSTQIRLLSRITNTISTTHSIASFVSFLVFLTN-----GRYRTLIDRLLRMRL---- 236
Query: 158 RDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFSNTLLTK-----RGLLTFVKKPPRS 212
A F S EY NRQL+W+A E L R +T + S
Sbjct: 237 ------APPFTQVSREVSFEYLNRQLVWHAFTEFLLFLLPLVGIGRWRRWITRAWRKTMS 290
Query: 213 RSTTTY-----------------KTVCPRC----------------------------GG 227
T + CP C
Sbjct: 291 SLRTADEGNDEQVKAQGGLAFLPERTCPICYQEQNPAARSENDVLGASGASGGIIGSAQT 350
Query: 228 FPTNPYQIACCRANYCYVCVVKALEWS-----MCDACGSSGRLTAS 268
NPY+ C YC+VC+ + LE +C CG +
Sbjct: 351 DVVNPYETMPCGCIYCFVCIAEKLEAEEGEGWICLRCGEIVKKCKP 396
>ref|NP_001016841.1| peroxin 2 [Xenopus tropicalis]
emb|CAJ82611.1| peroxisomal membrane protein 3, 35kDa (Zellweger syndrome) [Xenopus
tropicalis]
gb|AAI21554.1| Peroxisomal membrane protein 3 [Xenopus tropicalis]
Length = 306
Score = 234 bits (597), Expect = 5e-60, Method: Composition-based stats.
Identities = 56/291 (19%), Positives = 101/291 (34%), Gaps = 46/291 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD+I L+K L WS+FN+ F + +E + + + R+ Y +
Sbjct: 16 RISQLDAIELNKALEQLIWSQFNSCFQGFKPGLLTRFEPEIKAFLCLFLWRYTI-YTKNA 74
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIFNGPH-CGNQM 106
T G A+ + ++ +++ + + ++ G ++ + +F+ +
Sbjct: 75 TVGQAILNMQYKNDLEATKNYRPLNKQQKVWFALFMVGGKWLEERSFDLFSNHPFGASFQ 134
Query: 107 MWLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASE 166
++ L + NFL FL F + R + S
Sbjct: 135 RTKYFLNAISGLLKFGALLNFLIFL-----QQGKFATLTERLLGIRSVFSRP-------- 181
Query: 167 FYSNSVFAGLEYQNRQLLWNALLEL--FSNTLLTKRGL--------LTFVKKPPRSRSTT 216
+ G EY NR++LW+ E F L+ + L S
Sbjct: 182 --QDVRQVGFEYMNREILWHGFAEFLIFLLPLINTQKLKSKLFSWCKPAKGHSLSDPSLA 239
Query: 217 TYKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWSM---CDACGSSGR 264
C CG +P P+ I C +CY C+ M C C S
Sbjct: 240 VICKECCLCGEWPAMPHTIGCS-HVFCYYCIKSNYMADMYFTCPKCSSQVH 289
>ref|XP_001220945.1| hypothetical protein CHGG_01724 [Chaetomium globosum CBS 148.51]
gb|EAQ93489.1| hypothetical protein CHGG_01724 [Chaetomium globosum CBS 148.51]
Length = 597
Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats.
Identities = 64/353 (18%), Positives = 98/353 (27%), Gaps = 109/353 (30%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTS---------------------EHKEEWELAL 41
RV Q+D+ LD+EL G + A + + E L L
Sbjct: 139 RVGQVDAELLDEELVGLLRGQVGDALRYVGGGVGGGGGGAGGAGGSAVLHDWEAEVSLVL 198
Query: 42 NTVVFMCATRFLPHYGSSCTYGSALSGVVF--------------QCRKRTLYVVTVLAGY 87
V+F + TYG+AL + + + +K +VTV Y
Sbjct: 199 RAVLFKL-----TVWDHDATYGAALQNLRYTDARRDGPGLVPPSKWQKSLYGLVTVGGRY 253
Query: 88 VWKKITHIIFNGPHC-----GNQMMWLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFL 142
+W K + + ++ ++ +FL FL +
Sbjct: 254 LWAKWEDWLLEQDDGFQGPSPGAQRLARWSSMLSTMHASAAFASFLVFL-----LHGRYR 308
Query: 143 SPLYRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFSNTLLTK--- 199
+ L R + A S EY NRQL+W+A E L
Sbjct: 309 TLLDRVLRMRL----------APPTSQVSREVSFEYLNRQLVWHAFTEFLLFVLPLVGIN 358
Query: 200 --RGLLTFVKKPPRSRSTTT--------------YKTVCPRC------------------ 225
R L + + TT + C C
Sbjct: 359 RWRRWLARTWRKTKKIMTTGAEGADEKKGEYSFLPERTCAICYQDQNSVSSENDLMAATS 418
Query: 226 -------GGFPTNPYQIACCRANYCYVCVVKALEWS-----MCDACGSSGRLT 266
TNPY C YC+VC+ +E C CG +
Sbjct: 419 SGVVGSAQTDITNPYATIPCGCIYCFVCLTTRIEREEGEGWSCLRCGELVKEC 471
>ref|XP_750106.1| peroxisome biosynthesis protein (Peroxin-2) [Aspergillus fumigatus
Af293]
gb|EAL88068.1| peroxisome biosynthesis protein (Peroxin-2), putative [Aspergillus
fumigatus Af293]
gb|EDP55700.1| peroxisome biosynthesis protein (Peroxin-2), putative [Aspergillus
fumigatus A1163]
Length = 479
Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats.
Identities = 63/343 (18%), Positives = 109/343 (31%), Gaps = 97/343 (28%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK------EEWELALNTVVFMCATRFLPHY 56
RV Q+D+ LD+EL G + A + E + AL ++F + +
Sbjct: 74 RVGQVDAELLDEELLGLLKGQVGNALKYFGPQLREDWSHEIQFALRAILFKLSI-----W 128
Query: 57 GSSCTYGSALSGVVF--------------QCRKRTLYVVTVLAGYVWKKITHIIFN---- 98
+ +YG+AL G+ + + +K ++TV Y W+K + +
Sbjct: 129 DHNASYGAALQGLRYVDSRSKGPVHSTPTKWQKSLYGLLTVGGRYAWEKWESWLISQEGG 188
Query: 99 -GPHCGNQMMWLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLI 157
+ M +L V+ + +FL FL + + + R + T
Sbjct: 189 YEEPSRDVRMLARLTGLVSTTHSIAAFVSFLVFLVN-----GRYRTLVDRILRIRLTP-- 241
Query: 158 RDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFSNTLLTK-----RGLLTFVKKPPRS 212
++ EY NRQL+W+A E L R L+ + S
Sbjct: 242 --------PSAQSAREVSFEYLNRQLVWHAFTEFLLFLLPLVGISRWRRWLSRAWRKAIS 293
Query: 213 RSTTTY----------------KTVCPRC--------------------------GGFPT 230
+ + C C T
Sbjct: 294 AIRSRDDDEVEVEKRGELAFLPERTCAICYKDQNPASTSENDIITASAGGIVGSAQTDIT 353
Query: 231 NPYQIACCRANYCYVCVVKALEWS-----MCDACGSSGRLTAS 268
NPY+ C YC+VC+V+ +E +C CG +
Sbjct: 354 NPYETVPCGCIYCFVCLVQKVEGEEGEGWICLRCGEIVKKCKP 396
>ref|XP_001269799.1| peroxisome biosynthesis protein (Peroxin-2), putative [Aspergillus
clavatus NRRL 1]
gb|EAW08373.1| peroxisome biosynthesis protein (Peroxin-2), putative [Aspergillus
clavatus NRRL 1]
Length = 486
Score = 232 bits (593), Expect = 2e-59, Method: Composition-based stats.
Identities = 63/343 (18%), Positives = 111/343 (32%), Gaps = 97/343 (28%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK------EEWELALNTVVFMCATRFLPHY 56
RV Q+D+ LD+EL G ++ A + E + L ++F + +
Sbjct: 74 RVGQVDAELLDEELLGLLKNQVGDALKYFGPQLREDWSHEIQFVLRALLFKLSI-----W 128
Query: 57 GSSCTYGSALSGVVF--------------QCRKRTLYVVTVLAGYVWKKITHIIFN---- 98
+ +YG+AL G+ + + +K ++TV Y W+K + N
Sbjct: 129 DHNASYGAALQGLRYVDCRSKGPVHSTPTRWQKTIYGLLTVGGRYAWEKWESWLINQEGG 188
Query: 99 -GPHCGNQMMWLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLI 157
M ++ ++ + T+FL FL + + + R + T
Sbjct: 189 YEEPSREVRMLSRMTDLISTTHSIAAFTSFLVFLVN-----GRYRTLVDRILRIRLTP-- 241
Query: 158 RDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFSNTLLTK-----RGLLTFVKKPPRS 212
++ EY NRQL+W+A E L R L+ V + S
Sbjct: 242 --------PSAQSAREVSFEYLNRQLVWHAFTEFLLFLLPLVGISRWRRWLSRVWRKMIS 293
Query: 213 RSTTT----------------YKTVCPRC--------------------------GGFPT 230
++ + C C T
Sbjct: 294 AIRSSGDDDEPVEKQGELAYLPERTCAICYKDQNPTSTSENEVMAASSGGIVGSAQTDIT 353
Query: 231 NPYQIACCRANYCYVCVVKALEWS-----MCDACGSSGRLTAS 268
NPY+ C YC+VC+V+ +E +C CG +
Sbjct: 354 NPYETIPCGCIYCFVCLVQKVEGEEGEGWVCLRCGEIVKRCQP 396
>ref|XP_001398873.1| hypothetical protein An18g04150 [Aspergillus niger]
emb|CAK43217.1| unnamed protein product [Aspergillus niger]
Length = 481
Score = 231 bits (589), Expect = 4e-59, Method: Composition-based stats.
Identities = 64/345 (18%), Positives = 106/345 (30%), Gaps = 99/345 (28%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK------EEWELALNTVVFMCATRFLPHY 56
RV Q+D+ LD+EL G + A + E + AL ++F + +
Sbjct: 74 RVGQVDAELLDEELLGLLKGQVGDALKYYGPQLREDWSHEIQFALRAILFKLSI-----W 128
Query: 57 GSSCTYGSALSGVVF--------------QCRKRTLYVVTVLAGYVWKKITHIIFN---- 98
+YG+AL + + + +K ++TV Y W K + N
Sbjct: 129 DHDASYGAALQNLKYIDSRSKGPVHSAPTKWQKSLYGLLTVGGRYAWGKWESWLINQESG 188
Query: 99 -GPHCGNQMMWLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLI 157
M ++ V+ + +FL FL + + + R +
Sbjct: 189 YEEPSQEVRMLARMTDLVSASHSIAAFVSFLVFLVN-----GRYRTLVDRVLRMRLIP-- 241
Query: 158 RDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFSNTLLTK-----RGLLTFVKKPPRS 212
S EY NRQL+W+A+ E L R L+ + + S
Sbjct: 242 --------PSAQASREVSFEYLNRQLVWHAMTEFLLFLLPLVGISRWRRWLSRLWRKTLS 293
Query: 213 RSTTTY----------------KTVCPRC----------------------------GGF 228
+ + C C
Sbjct: 294 TLKSGSEDEEQTGKQGELAFLPERTCAICYKDNNPTSTTEGEAIAASASSGGIVGSAQTD 353
Query: 229 PTNPYQIACCRANYCYVCVVKALEWS-----MCDACGSSGRLTAS 268
TNPY+I C YC+VC+V+ LE +C CG +
Sbjct: 354 ITNPYEIIPCGCIYCFVCIVQKLEGEEGEGWVCLRCGEIVKKCKP 398
>gb|EEH34726.1| peroxisomal biogenesis factor 2 [Paracoccidioides brasiliensis
Pb01]
Length = 488
Score = 230 bits (588), Expect = 7e-59, Method: Composition-based stats.
Identities = 59/346 (17%), Positives = 103/346 (29%), Gaps = 100/346 (28%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTS------EHKEEWELALNTVVFMCATRFLPHY 56
RV Q+D+ LD+EL + + E + AL ++F + +
Sbjct: 71 RVGQVDAELLDEELLTLLKGQVGEGLKYFGSHIKEDWTHEIQFALRAILFKLS-----VW 125
Query: 57 GSSCTYGSALSGVVFQCR-------------KRTLYVV-TVLAGYVWKKITHIIFNGPHC 102
+ +YG+AL + + ++ LY + TV Y+W K + +
Sbjct: 126 DHNASYGAALQNLKYTDSRQKGPTLSDPTKWQKALYGLYTVGGRYIWDKWESWLIDQEGG 185
Query: 103 GNQMM-----WLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLI 157
N+ ++ ++ + +FL FL + + + R +
Sbjct: 186 YNEPSPQIRLLSRITNTISTTHSIASFVSFLVFLTN-----GRYRTLIDRLLRMRL---- 236
Query: 158 RDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFSNTLLTK-----RGLLTFVKKPPRS 212
A S EY NRQL+W+A E L R ++ +
Sbjct: 237 ------APPSTQVSREVSFEYLNRQLVWHAFTEFLLFLLPLVGIGRWRRWISRAWRKTML 290
Query: 213 RSTTTY-----------------KTVCPRC----------------------------GG 227
T + CP C
Sbjct: 291 SLRTADEGDDEQVKAQGELAFLPERACPICYQEQNPAARSENDVLGASGGSGGIIGSAQT 350
Query: 228 FPTNPYQIACCRANYCYVCVVKALEWS-----MCDACGSSGRLTAS 268
NPY+ C YC+VC+ + LE +C CG +
Sbjct: 351 DVVNPYETMPCGCIYCFVCIAEKLEAEEGEGWICLRCGEIVKKCKP 396
>ref|XP_447524.1| hypothetical protein CAGL0I06292g [Candida glabrata CBS138]
emb|CAG60461.1| unnamed protein product [Candida glabrata CBS 138]
Length = 258
Score = 227 bits (580), Expect = 6e-58, Method: Composition-based stats.
Identities = 109/262 (41%), Positives = 163/262 (62%), Gaps = 12/262 (4%)
Query: 1 MSRVAQLDSIALDKELYGQFWSEFNAAFNTSEHKEEWELALNTVVFMCATRFLPHYGSSC 60
MSRVAQLDS+ LD+E+ W+ F F S++ EE + L +VF+C ++ + +
Sbjct: 1 MSRVAQLDSVVLDQEVDHLIWNIFQKDFKVSKYAEECQFLLRCLVFICGSKSVDGVN-TT 59
Query: 61 TYGSALSGVVFQCRKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMMWLKLYKWVNLLYH 120
TYGS LSGV + CRKRTL+V +L Y+++K++++ F+ + + L+LY+W++ LY
Sbjct: 60 TYGSRLSGVYYLCRKRTLFVSNILIHYLYRKLSNLYFSSNNISER--TLRLYRWISTLYG 117
Query: 121 GCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQN 180
D+T FLRFL ++G +LS R + ++ + S FY ++V+AGLEYQN
Sbjct: 118 VLDLTTFLRFLLSDGNT--KYLSLTNRLLGIVTSVDMLSP----SSFYQDTVYAGLEYQN 171
Query: 181 RQLLWNALLELFSNTLLTKRGLLTFVKKPPRSRSTTTYKTVCPRCGGFPTNPYQIACCRA 240
RQLLWNALLE+F++TL+ L + + R +T CP C GFP NPY+ +CCRA
Sbjct: 172 RQLLWNALLEVFNSTLMNSNKYLWDTR---KKRDKPANETTCPECNGFPVNPYRSSCCRA 228
Query: 241 NYCYVCVVKALEWSMCDACGSS 262
NYCY+C +KAL C CG++
Sbjct: 229 NYCYICGMKALAREHCTNCGNT 250
>ref|XP_001646918.1| hypothetical protein Kpol_2000p24 [Vanderwaltozyma polyspora DSM
70294]
gb|EDO19060.1| hypothetical protein Kpol_2000p24 [Vanderwaltozyma polyspora DSM
70294]
Length = 264
Score = 227 bits (579), Expect = 7e-58, Method: Composition-based stats.
Identities = 107/273 (39%), Positives = 160/273 (58%), Gaps = 11/273 (4%)
Query: 1 MSRVAQLDSIALDKELYGQFWSEFNAAFNTSEHKEEWELALNTVVFMCATRFLPHYGSSC 60
MSRVA DS+ LD EL+ +W EF N ++ EWE LN+++F+ +T +
Sbjct: 1 MSRVAVFDSLELDNELHDLYWREFKQNLNIRNNEHEWEFLLNSIIFLFSTYK-KGNNLTT 59
Query: 61 TYGSAL-SGVVFQCRKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMMWLKLYKWVNLLY 119
TY L S +F K+TL+V+T+L Y+ KK+ H+I+N + L L W N +Y
Sbjct: 60 TYALELTSNNLFNATKKTLFVITILKNYINKKLQHLIYNN----SNESLLYLLHWFNKIY 115
Query: 120 HGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQ 179
D+ NFL+FL++ + F+SP++R NV TR +S+FY N+V + L++Q
Sbjct: 116 SLLDLINFLKFLSSFNNSH-LFISPIHRLLNVPITRTN---LESSSDFYQNTVVSNLQFQ 171
Query: 180 NRQLLWNALLELFSNTLLTKRGLLTFVKKPPRSRSTT-TYKTVCPRCGGFPTNPYQIACC 238
NRQLLWN++LELF+ TLL L KP + ++ + T T+C RC FP+ PY+ CC
Sbjct: 172 NRQLLWNSILELFNMTLLNNSAWLQRKFKPMKLKNKSLTDSTICTRCDEFPSQPYRFQCC 231
Query: 239 RANYCYVCVVKALEWSMCDACGSSGRLTASPVY 271
++ YCY+C +K L+ S+C CG L A P+Y
Sbjct: 232 QSLYCYICTIKTLDLSICQNCGKDNNLKAVPLY 264
>ref|XP_661660.1| hypothetical protein AN4056.2 [Aspergillus nidulans FGSC A4]
gb|EAA58944.1| hypothetical protein AN4056.2 [Aspergillus nidulans FGSC A4]
Length = 444
Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats.
Identities = 59/346 (17%), Positives = 101/346 (29%), Gaps = 100/346 (28%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEH------KEEWELALNTVVFMCATRFLPHY 56
RV Q+D+ LD+EL G + A E + L ++F + +
Sbjct: 74 RVGQVDAELLDEELLGLLKGQVGDALKYFGPHLRDDWSHEIQFVLRAILFKLSI-----W 128
Query: 57 GSSCTYGSALSGVVFQCRKR--------------TLYVVTVLAGYVWKKITHIIFN---- 98
+YG+AL + + + ++TV Y W K + +
Sbjct: 129 DHDASYGAALQSLKYVDSRSKGPVHSTPTMLQKSLYGLLTVGGRYAWDKWESWLISREGG 188
Query: 99 -GPHCGNQMMWLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLI 157
++ +++ + +FL FL + + + R + T
Sbjct: 189 YEEPSPEVRSLSRITNFLSTTHSIAAFFSFLIFLV-----DGRYRTLIDRLLRMRLTP-- 241
Query: 158 RDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFSNTLLTK-----RGLLTFVKKPPRS 212
S EY NRQL+W+A E L R ++ + S
Sbjct: 242 --------PSAQASREVSFEYLNRQLVWHAFTEFLLFLLPLVGISRWRRWVSRAWRKAMS 293
Query: 213 RSTTTY-----------------KTVCPRC----------------------------GG 227
+T + C C
Sbjct: 294 AIRSTSVDEDEVSEKQGELAFLPERSCAICYKANNTATTETEVIAAASSGAGGIIGSAQT 353
Query: 228 FPTNPYQIACCRANYCYVCVVKALEWS-----MCDACGSSGRLTAS 268
TNPY+ C YC+VC+V+ LE +C CG +
Sbjct: 354 DITNPYETIPCGCIYCFVCIVQKLEGEEGEGWVCLRCGELVKKCKP 399
>ref|XP_368589.1| hypothetical protein MGG_00655 [Magnaporthe grisea 70-15]
gb|EDK02709.1| hypothetical protein MGG_00655 [Magnaporthe grisea 70-15]
Length = 498
Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats.
Identities = 68/355 (19%), Positives = 106/355 (29%), Gaps = 109/355 (30%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTS-----------EHKEEWELALNTVVFMCATR 51
RV Q+D+ LD+EL GQ S+ + + E LAL V+F
Sbjct: 76 RVGQVDAELLDEELLGQLRSQVSEGLRYLGGGGGGSRLGDDWAPEILLALRAVLFKL--- 132
Query: 52 FLPHYGSSCTYGSALSGVVFQCR-------------KRTLYV-VTVLAGYVWKKITHIIF 97
+ TYG+AL + + ++ LY VTV YVW K +
Sbjct: 133 --TIWDHDATYGAALQNLKYTDARNTGSVPVPPSRLQKALYGTVTVCGKYVWTKWEDWLI 190
Query: 98 NGPHCGN--------QMMWLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAF 149
+ + +L + + ++ + +F+ FL + + L R
Sbjct: 191 DQDNGAYDSQQARPVVQRLSRLTELASNIHAAGALVSFMAFLIN-----GRYRTLLDRIL 245
Query: 150 NVHSTRLIRDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFSNTLLTK-----RGLLT 204
+ A S EY NRQL+W+A E L R +T
Sbjct: 246 RMRL----------APPTSQVSREVSFEYLNRQLVWHAFTEFLLFVLPLVGINRWRKWIT 295
Query: 205 FVKKPPRSRSTTT------------------YKTVCPRC--------------------- 225
+ + T + C C
Sbjct: 296 RTWRRTKDAITAGTGGEGEEGGEKKGEFAFLPERTCAICYQDQNSGANTEEEILAAAAAS 355
Query: 226 -------GGFPTNPYQIACCRANYCYVCVVKALEWS-----MCDACGSSGRLTAS 268
TNPY+ C YC+VC+ LE +C CG +
Sbjct: 356 SGVIGSAQTDITNPYETLPCGCIYCFVCLATRLEREEGDGWVCLRCGEIVKECKP 410
>ref|XP_380900.1| hypothetical protein FG00724.1 [Gibberella zeae PH-1]
Length = 439
Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats.
Identities = 63/339 (18%), Positives = 97/339 (28%), Gaps = 90/339 (26%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTS-------EHKEEWELALNTVVFMCATRFLPH 55
RV Q+D+ LD EL + + + E LAL V+F
Sbjct: 69 RVGQVDAELLDIELLDILKDQVSEGLKYFGGGHLHDDWSAEIMLALRAVLFKL-----TV 123
Query: 56 YGSSCTYGSALSGVVF--------------QCRKRTLYVVTVLAGYVWKKITHIIFNGPH 101
+ TYG+AL + + + +K +VTV Y W + +
Sbjct: 124 WDHDATYGAALQNLKYTDARNDGLILKAPSKVQKSLYGLVTVFGNYAWTRWEDWLLEHDD 183
Query: 102 CGNQM--MWLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRD 159
++ +L K+ + + + FL + + L R +
Sbjct: 184 GYDEPSPRLKRLSKFTSAISTVHSAAACVSFLVFLL--HGRYRTLLDRILRMRL------ 235
Query: 160 GSAIASEFYSNSVFAGLEYQNRQLLWNALLELFSNTLLTK-----RGLLTFVKKPPRSRS 214
A S EY NRQL+W+A E L R LT + +
Sbjct: 236 ----APPTSQVSREVSFEYLNRQLVWHAFTEFLLFVLPLIGIQRWRRWLTRTWRKTKDII 291
Query: 215 TTT--------------YKTVCPRC--------------------------GGFPTNPYQ 234
T + C C TNPY+
Sbjct: 292 RTGPQEEGKANGEYAFLPERTCAICYQDQNNATSENEVMAAAASSGVVGSAQTDITNPYE 351
Query: 235 IACCRANYCYVCVVKALEWS-----MCDACGSSGRLTAS 268
C YC+VC+ LE C CG +
Sbjct: 352 TIPCGCVYCFVCLATRLEREEGEGWTCLRCGEHVKECKP 390
>gb|ABH11413.1| peroxin 2 [Penicillium chrysogenum]
Length = 487
Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats.
Identities = 61/344 (17%), Positives = 103/344 (29%), Gaps = 98/344 (28%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK------EEWELALNTVVFMCATRFLPHY 56
RV Q+D+ LD+EL G + A + E AL ++F + +
Sbjct: 74 RVGQVDAELLDEELLGLLKGQVGDALKYFGPQMREDWSHEILFALRAILFKLSI-----W 128
Query: 57 GSSCTYGSALSGVVF--------------QCRKRTLYVVTVLAGYVWKKITHIIFNGPHC 102
+ +YG+AL G+ + + +K ++TV Y W K +
Sbjct: 129 DHNASYGAALQGLKYTDSRSKGPVYASPTKWQKGIYGLLTVGGRYAWDKWESWLVGQEGG 188
Query: 103 GNQ-----MMWLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLI 157
++ M L ++ + +FL FL + + + R +
Sbjct: 189 YDEPSQDIRMLSGLTGILSTSHSIAAFVSFLVFLVN-----GRYRTLVDRILRIRL---- 239
Query: 158 RDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFSNTLLTK-----RGLLTFVKKPPRS 212
A S EY NRQL+W+A E L R + +
Sbjct: 240 ------APPSAQASREVSFEYLNRQLVWHAFTEFLLFLLPLVGIGRWRRWIARAWHKMVN 293
Query: 213 RSTTT----------------YKTVCPRC---------------------------GGFP 229
++ + C C
Sbjct: 294 SVRSSGDDDEIPEKQGELAFLPERTCAICYRDQNPTTTTESDAIAASASGGIVGSAQTDI 353
Query: 230 TNPYQIACCRANYCYVCVVKALEWS-----MCDACGSSGRLTAS 268
TNPY+ C YC+VC+V+ +E C CG +
Sbjct: 354 TNPYETVPCGCIYCFVCIVQKIEAEEGQGWSCLRCGEVVKKCQP 397
>ref|XP_001540740.1| peroxisomal biogenesis factor 2 [Ajellomyces capsulatus NAm1]
gb|EDN08070.1| peroxisomal biogenesis factor 2 [Ajellomyces capsulatus NAm1]
Length = 466
Score = 225 bits (573), Expect = 3e-57, Method: Composition-based stats.
Identities = 57/345 (16%), Positives = 100/345 (28%), Gaps = 99/345 (28%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTS------EHKEEWELALNTVVFMCATRFLPHY 56
RV Q+D+ LD+EL + + E + AL ++F + +
Sbjct: 71 RVGQVDAELLDEELLALLKGQVGEGLKYFGTHIKEDWTHEIQFALRAILFKLS-----VW 125
Query: 57 GSSCTYGSALSGVVFQCRKR--------------TLYVVTVLAGYVWKKITHIIFNGP-- 100
+ +YG+AL + + ++ + TV Y W K + +
Sbjct: 126 DHNASYGAALQNLKYTDSRKRSPTLSDPTKWQKSLYGIFTVGGRYAWDKWESWLIDQEGG 185
Query: 101 ---HCGNQMMWLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLI 157
+ ++ K ++ + +FL FL + + + R +
Sbjct: 186 YDEPPSQVRLLSRVTKVISTTHSIAGFISFLVFLTN-----GRYRTLIDRVLRMRL---- 236
Query: 158 RDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFSNTLLTK-----RGLLTFVKKPPRS 212
A S EY NRQL+W+A E L R ++ + S
Sbjct: 237 ------APPSTQVSREVSFEYLNRQLVWHAFTEFLLFLLPLVGIGRWRRWVSRAWRRTMS 290
Query: 213 RSTTTY----------------KTVCPRC----------------------------GGF 228
+ CP C
Sbjct: 291 SLKAADEGAVQAKSKGDLAFLPERTCPICYQEKNPTATSENEVLGASGALGGIIGSAQTD 350
Query: 229 PTNPYQIACCRANYCYVCVVKALEWS-----MCDACGSSGRLTAS 268
NPY+ C YC+VC+ + LE +C CG +
Sbjct: 351 VVNPYETMPCGCVYCFVCIAEKLEAEEGEGWICLRCGDLVKQCKP 395
>emb|CAO45868.1| unnamed protein product [Vitis vinifera]
Length = 346
Score = 222 bits (565), Expect = 3e-56, Method: Composition-based stats.
Identities = 59/299 (19%), Positives = 100/299 (33%), Gaps = 56/299 (18%)
Query: 1 MSRVAQLDSIALDKELYGQFWSEFNAAFNTSEHKEEWE--LALNTVVFMCATRFLPHYGS 58
+SRV Q+D+ LD E+ + F+ + ++ L+ + RF
Sbjct: 47 ISRVNQVDAARLDIEISAMLKEQLVKVFSLMKPGMLFQYEPELDAFLEFLIWRFSIWVDK 106
Query: 59 SCTYGSALSGVVFQCR---------------------KRTLYVVTVLAG-YVWKKITHII 96
T G+ L + ++ ++ Y V + G Y+W ++
Sbjct: 107 -PTPGNGLMNLRYRDERTMELRGKVRTGLEGPGLTVAQKIWYCVATVGGQYIWARLQSFS 165
Query: 97 FNGPHCGNQMMWLKLYKWV-----NLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNV 151
++ + W+ LY +N L FL + + + RA
Sbjct: 166 AFRRWGDSEQRSVARRAWIMIQRIEGLYKAASFSNLLIFLFT-----GRYRNLIERAL-- 218
Query: 152 HSTRLIRDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFS------NTLLTKRGLLTF 205
+ S + + EY NRQL+WN E+ N+ + L F
Sbjct: 219 ------QARLVYGSP--NMNRAVSFEYMNRQLVWNEFSEMLLLLLPLLNSSSIRNFLRPF 270
Query: 206 VKKPPRSRSTTTYKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALE---WSMCDACGS 261
K +S S+ +T CP C PT P+ C YCY C+ C C
Sbjct: 271 SK--NKSSSSEGDETACPICQASPTIPFLALPCEHRYCYYCLRTRCAAASSFRCIRCSE 327
>ref|XP_001212277.1| peroxisomal biogenesis factor 2 [Aspergillus terreus NIH2624]
gb|EAU36373.1| peroxisomal biogenesis factor 2 [Aspergillus terreus NIH2624]
Length = 473
Score = 222 bits (565), Expect = 3e-56, Method: Composition-based stats.
Identities = 64/345 (18%), Positives = 110/345 (31%), Gaps = 99/345 (28%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK------EEWELALNTVVFMCATRFLPHY 56
RV Q+D+ LD+EL G ++ A + E + AL ++F + +
Sbjct: 74 RVGQVDAELLDEELLGLLKNQVGDALKYYGPQLREDWSNEIQFALRALLFKLSI-----W 128
Query: 57 GSSCTYGSALSGVVFQCR-------------KRTLY-VVTVLAGYVWKKITHIIFN---- 98
+YG+AL G+ + ++TLY ++TV Y W K + N
Sbjct: 129 DHDASYGAALQGLKYVDSRSKGPVHSTPTKWQKTLYGLLTVGGRYAWDKWESWLINQEGG 188
Query: 99 -GPHCGNQMMWLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLI 157
+ +L V+ + +FL FL + + + R + T
Sbjct: 189 YEEPSREVRLLSRLTDLVSTTHSIAAFISFLVFLVN-----GRYRTLVDRILRIRLTP-- 241
Query: 158 RDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFSNTLLTK-----RGLLTFVKKPPRS 212
S EY NRQL+W+A E L R ++ + +
Sbjct: 242 --------PSAQASREVSFEYLNRQLVWHAFTEFLLFLLPLVGISRWRRWVSRAWRKTMA 293
Query: 213 RSTTTY----------------KTVCPRC----------------------------GGF 228
++ + C C
Sbjct: 294 TLKSSEDEDETVEKQGELAFLPERTCGICYQQNNPSSATESEAIAASAASGGIIGSAQTD 353
Query: 229 PTNPYQIACCRANYCYVCVVKALEWS-----MCDACGSSGRLTAS 268
TNPY+ C YC+VC+V+ +E +C CG+ +
Sbjct: 354 ITNPYEAVPCGCVYCFVCLVQKIEGEEGEGWVCLRCGAVVKKCKP 398
>ref|XP_001912471.1| unnamed protein product [Podospora anserina]
sp|P51021|PEX2_PODAN Peroxisomal biogenesis factor 2 (Peroxin-2) (Peroxisomal protein
CAR1)
emb|CAA60739.1| peroxisome assembly factor [Podospora anserina]
emb|CAP59952.1| unnamed protein product [Podospora anserina]
Length = 554
Score = 221 bits (563), Expect = 5e-56, Method: Composition-based stats.
Identities = 65/349 (18%), Positives = 100/349 (28%), Gaps = 103/349 (29%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTS------------EHKEEWELALNTVVFMCAT 50
RV Q+D+ LD+EL + A E E LAL V+F
Sbjct: 116 RVGQVDAELLDEELVELMKGQVGEAVRYYGGGGGGDNNIKHEWDAEISLALRAVIFKL-- 173
Query: 51 RFLPHYGSSCTYGSALSGVVF--------------QCRKRTLYVVTVLAGYVWKKITHII 96
+ TYG+AL + + + +K ++TV Y+W K + +
Sbjct: 174 ---TIWDHDATYGAALQNLKYTDARHTGSVLVPPSKWQKGLYGLMTVGGRYMWSKWENWL 230
Query: 97 FNGP-----HCGNQMMWLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNV 151
+ ++ L+ +FL FL + + L R +
Sbjct: 231 REQDGGYDEPSPTVQRLSSMTDRLSTLHAAASFASFLVFL-----LQGRYRTLLDRVLRM 285
Query: 152 HSTRLIRDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFSNTLLTK-----RGLLTFV 206
A S EY NRQL+W+A E L R L
Sbjct: 286 RL----------APPTSQVSREVSFEYLNRQLVWHAFTEFLLFVLPLVGINRWRRWLART 335
Query: 207 KKPPRSRSTTT---------------YKTVCPRC-------------------------- 225
+ + +TT + C C
Sbjct: 336 WRKTKKIMSTTGGEGAEEKKGEFAFLPERTCAICYQDQNQATNENELMAAATSKTGVVGS 395
Query: 226 -GGFPTNPYQIACCRANYCYVCVVKALEWS-----MCDACGSSGRLTAS 268
TNPY+ C YC+VC+ +E C CG +
Sbjct: 396 AQTDVTNPYETIPCGCVYCFVCLATRIEREEGEGWNCLRCGELVKECKP 444
>ref|NP_565222.1| TED3 (REVERSAL OF THE DET PHENOTYPE); protein binding / zinc ion
binding [Arabidopsis thaliana]
sp|Q9CA86|PEX2_ARATH Peroxisome assembly protein 2 (Peroxin-2) (AthPEX2) (Pex2p)
gb|AAG52254.1|AC011717_22 putative RING finger protein; 84236-82024 [Arabidopsis thaliana]
gb|AAL36419.1| unknown protein [Arabidopsis thaliana]
gb|AAM20014.1| unknown protein [Arabidopsis thaliana]
Length = 333
Score = 220 bits (560), Expect = 1e-55, Method: Composition-based stats.
Identities = 57/301 (18%), Positives = 95/301 (31%), Gaps = 58/301 (19%)
Query: 1 MSRVAQLDSIALDKELYGQFWSEFNAAFNTSEHKEEWE--LALNTVVFMCATRFLPHYGS 58
+SRV Q D+ LD E+ + F + ++ L+ + RF
Sbjct: 37 ISRVNQFDAARLDVEMSAMLKEQLVKVFTLMKPGMLFQYEPELDAFLEFLIWRFSIWVDK 96
Query: 59 SCTYGSALSGVVFQCR-----------------------KRTLYVVTVLAG-YVWKKITH 94
T G+AL + ++ ++ Y V + G Y++ ++
Sbjct: 97 -PTPGNALMNLRYRDERGVVAQHLGKVRTGLEGPGLTSPQKIWYCVASVGGQYLFSRLQS 155
Query: 95 IIFNGPHCGNQ-----MMWLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAF 149
++ L + + +Y N L FL + + + +A
Sbjct: 156 FSAFRRWGDSEQRPLARRLWTLVQRIEGIYKAASFLNLLSFLYT-----GRYRNLIEKAL 210
Query: 150 NVHSTRLIRDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFS------NTLLTKRGLL 203
S + EY NRQL+WN E+ N+ K L
Sbjct: 211 K--------ARLVYRSPH--MNRSVSFEYMNRQLVWNEFSEMLLLLLPLLNSSAVKNILS 260
Query: 204 TFVKKPPRSRSTTTYKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWS---MCDACG 260
F K +S ST CP C P P+ C+ YCY C+ + C C
Sbjct: 261 PFAKD--KSSSTKEDTVTCPICQVDPAIPFIALPCQHRYCYYCIRTRCASAASFRCLRCN 318
Query: 261 S 261
Sbjct: 319 E 319
>ref|NP_001055075.1| Os05g0275700 [Oryza sativa (japonica cultivar-group)]
gb|AAT85132.1| putative peroxisome assembly protein 2 [Oryza sativa (japonica
cultivar-group)]
dbj|BAF16989.1| Os05g0275700 [Oryza sativa (japonica cultivar-group)]
Length = 342
Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats.
Identities = 60/300 (20%), Positives = 103/300 (34%), Gaps = 57/300 (19%)
Query: 1 MSRVAQLDSIALDKELYGQFWSEFNAAFNTSEHKEEWE--LALNTVVFMCATRFLPHYGS 58
+SRV Q D+ LD E+ + F+ + ++ L+ + RF
Sbjct: 50 ISRVNQFDAARLDVEMSAMLKEQLVKVFSLVKPGLLFQYEPELDAFLEFLIWRFSIWVDK 109
Query: 59 SCTYGSALSGVVFQ----------------------CRKRTLYVVTVLAG-YVWKKITHI 95
T G+AL + ++ ++ LY ++ + G Y+W ++
Sbjct: 110 -PTPGNALMNLRYRDERAAPITGKEVRTGLEGPGLSVSQKVLYCISTVGGQYIWSRLQSF 168
Query: 96 IFNGPHCGNQMMWLKLYKW-----VNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFN 150
++ L W LY N L FL + + + R
Sbjct: 169 SAFRRWGDSEQRPLARRAWGLVQHAEGLYRASSFFNLLLFLYGA-----RYKTIVERILK 223
Query: 151 VHSTRLIRDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFS------NTLLTKRGLLT 204
S + + EY NRQL+WN E+ N+ K+ LL
Sbjct: 224 --------ARLVYESP--NMNRAVSFEYMNRQLVWNEFSEMLLLLLPLLNSSSVKKFLLP 273
Query: 205 FVKKPPRSRSTTTYKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWS---MCDACGS 261
F K +S S++ + CP C P+ P++ C+ YCY C+ + C C
Sbjct: 274 FSKD--KSASSSGDEADCPICRSSPSIPFEALPCQHRYCYYCLQTRCAATNSYRCARCNE 331
>ref|XP_684073.1| PREDICTED: similar to Peroxisome assembly factor 1 (PAF-1)
(Peroxin-2) (Peroxisomal membrane protein 3) (35 kDa
peroxisomal membrane protein) (RING finger protein 72)
[Danio rerio]
ref|XP_001343742.1| PREDICTED: similar to Peroxisome assembly factor 1 (PAF-1)
(Peroxin-2) (Peroxisomal membrane protein 3) (35 kDa
peroxisomal membrane protein) (RING finger protein 72)
[Danio rerio]
Length = 321
Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats.
Identities = 62/298 (20%), Positives = 102/298 (34%), Gaps = 47/298 (15%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHKEEW--ELALNTVVFMCATRFLPHYGSSC 60
R++QLD+ LD L WS+F F + E L ++ + RF Y +S
Sbjct: 32 RISQLDAFELDGALEQLVWSQFTQCFQHFKPGILTPVEPELKALLQLLLWRFTI-YSNSA 90
Query: 61 TYGSALSGVVFQC-------------RKRTLYVVTVLAGYVWKKITHIIF-NGPHCGNQM 106
T G +L + ++ ++ + + + +++ +H +F N P N
Sbjct: 91 TVGQSLLNIRYKNALIPGQKYRPMSRPQKFWFALLTVGEKWFRERSHSLFLNHPAESNAR 150
Query: 107 MWLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASE 166
K+ + L + NFL FL F + R V
Sbjct: 151 KARKVLSILLGLTKAASLVNFLLFL-----QRGTFPTLTERLLGVQPVFSRP-------- 197
Query: 167 FYSNSVFAGLEYQNRQLLWNALLELFSNTLLTKRGLL----------TFVKKPPRSRSTT 216
+Y NR+LLW+ E L S
Sbjct: 198 --QGPRDINFQYLNRELLWHGFAEFLIFLLPLINVWKLKAGVSALFSPLSDLTGTQSSEE 255
Query: 217 TYKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWS---MCDACG-SSGRLTASPV 270
T+ T C CG +PT P+ I C+ +CY CV + C CG +G++ +
Sbjct: 256 THLTECAICGEWPTMPHSIG-CKHVFCYYCVKSNVIADIYFTCPKCGAETGQIEPVRL 312
>gb|AAM61388.1| putative RING finger protein [Arabidopsis thaliana]
Length = 333
Score = 218 bits (555), Expect = 4e-55, Method: Composition-based stats.
Identities = 57/301 (18%), Positives = 94/301 (31%), Gaps = 58/301 (19%)
Query: 1 MSRVAQLDSIALDKELYGQFWSEFNAAFNTSEHKEEWE--LALNTVVFMCATRFLPHYGS 58
+SRV Q D+ LD E+ + F + ++ L+ + RF
Sbjct: 37 ISRVNQFDAARLDVEMSAMLKEQLVKVFTLMKPGMLFQYEPELDAFLEFLIWRFSIWVDK 96
Query: 59 SCTYGSALSGVVFQCR-----------------------KRTLYVVTVLAG-YVWKKITH 94
T G+AL + ++ ++ Y V + G Y++ ++
Sbjct: 97 -PTPGNALMNLRYRDERGVVAQHLGKVRTGLEGPGLTSPQKIWYCVASVGGQYLFSRLQS 155
Query: 95 IIFNGPHCGNQ-----MMWLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAF 149
++ L + + +Y N L FL + + + +A
Sbjct: 156 FSAFRRWGDSEQRPLARRLWTLVQRIEGIYKAASFLNLLSFLYT-----GRYRNLIEKAL 210
Query: 150 NVHSTRLIRDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFS------NTLLTKRGLL 203
S + EY NRQL+WN E+ N+ K L
Sbjct: 211 K--------ARLVYRSPH--MNRSVSFEYMNRQLVWNEFSEMLLLLLPLLNSSAVKNILS 260
Query: 204 TFVKKPPRSRSTTTYKTVCPRCGGFPTNPYQIACCRANYCYVCVVKALEWS---MCDACG 260
F K +S ST CP C P P C+ YCY C+ + C C
Sbjct: 261 PFAKD--KSSSTKEDTVTCPICQVDPAIPXIALPCQHRYCYYCIRTRCASAASFRCLRCN 318
Query: 261 S 261
Sbjct: 319 E 319
>ref|XP_714968.1| peroxisomal import RING finger complex component Pex2 [Candida
albicans SC5314]
ref|XP_714905.1| peroxisomal import RING finger complex component Pex2 [Candida
albicans SC5314]
gb|EAK95865.1| likely peroxisomal import RING finger complex component Pex2
[Candida albicans SC5314]
gb|EAK95929.1| likely peroxisomal import RING finger complex component Pex2
[Candida albicans SC5314]
Length = 420
Score = 213 bits (544), Expect = 8e-54, Method: Composition-based stats.
Identities = 70/330 (21%), Positives = 106/330 (32%), Gaps = 80/330 (24%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFN---TSEHKEEWELALNTVVFMCATRFLPHYGSS 59
RV+QLD+ LD EL+ + ++ F TS + L +++ L + S
Sbjct: 10 RVSQLDAGILDSELFSLLKEQLSSIFQLHSTSRYSFSQHPELYSLLLNLLIFRLTVWKSG 69
Query: 60 CTYGSALSGVVF---------QCRKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMMWLK 110
+YGS+L + ++ L ++ GY++KK+ +F Q
Sbjct: 70 SSYGSSLQNLKLTDSRSGKIIGSSRKALLGAVIIGGYLYKKLESYLFFLDESSTQNSHST 129
Query: 111 LYKW--------------VNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRL 156
L K + ++ NF FL + S + R + T +
Sbjct: 130 LDKLKNYLLINRTSILSGLENSLKIANLVNFTFFLVN-----GQYSSLVNRILGIIETPI 184
Query: 157 IRDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFSN--TLLTKRGLLTFVKKPPRSR- 213
D N E+QNRQL+WN + E LL R L +K
Sbjct: 185 SSDLLKF------NGSNVNYEFQNRQLVWNVMTEFLVFILPLLQLRKLGRMTRKLLGRSK 238
Query: 214 -----------STTTYKT----VCPRCGG-----------------FPTNPYQIACCRAN 241
+ T+Y C C TNPY I C
Sbjct: 239 NSLDVQSGNVPTLTSYTNLPVSECAICHDNNNQASQTGGRTFPSAGPVTNPY-ITNCGHV 297
Query: 242 YCYVCVVKAL-------EWSMCDACGSSGR 264
YCYVC+ E C CG
Sbjct: 298 YCYVCISTRFNMIKVNGEDMPCLRCGKRLE 327
>ref|XP_001559557.1| hypothetical protein BC1G_01713 [Botryotinia fuckeliana B05.10]
gb|EDN28594.1| hypothetical protein BC1G_01713 [Botryotinia fuckeliana B05.10]
Length = 474
Score = 213 bits (544), Expect = 8e-54, Method: Composition-based stats.
Identities = 61/343 (17%), Positives = 100/343 (29%), Gaps = 99/343 (28%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTS------EHKEEWELALNTVVFMCATRFLPHY 56
RV Q+D+ LD+E+ + S + E LAL ++ + +
Sbjct: 72 RVGQVDAELLDEEMLDYDEGQVGEGLKYSGTHIQDDWSAEIMLALRAILSNLSI-----W 126
Query: 57 GSSCTYGSALSGVVF--------------QCRKRTLYVVTVLAGYVWKKITHIIFNGPHC 102
TYG+ L + F + +K + TV Y W + + + + +
Sbjct: 127 DHDATYGATLQNLKFTDARHSGPVLVSPSKWQKSLYGLFTVGGKYAWTRWENYLVDSDNG 186
Query: 103 GNQ-----MMWLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLI 157
N ++ + ++ +FL FL +
Sbjct: 187 YNTPSPLMSRLSRITDLLTNVHSTAAFASFLVFLVNG---------------RYRTLLDR 231
Query: 158 RDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFSNTLLTK-----RGLLTFVKKPPRS 212
+A S EY NRQL+W+A E L R LL+ V + +S
Sbjct: 232 ILRLRLAPPTSQVSREVSFEYLNRQLVWHAFTEFLLFVLPLVGISRWRRLLSRVWRRAKS 291
Query: 213 RSTTTY-----------------KTVCPRC---------------------------GGF 228
T+ + C C
Sbjct: 292 VFNTSSPDELSINEKKGELSFLPERTCAICYHDQNALQATEEGVMAAAASTGVIGSAQTD 351
Query: 229 PTNPYQIACCRANYCYVCVVKALEWS-----MCDACGSSGRLT 266
TNPY+ C YC+VC+ LE C CG +
Sbjct: 352 ITNPYETVECGCIYCFVCIASKLEAEEGEGWTCLRCGEDVKGC 394
>ref|XP_001089931.1| PREDICTED: similar to Peroxisome assembly factor 1 (PAF-1)
(Peroxin-2) (Peroxisomal membrane protein 3) (35 kDa
peroxisomal membrane protein) (RING finger protein 72)
[Macaca mulatta]
Length = 253
Score = 213 bits (543), Expect = 1e-53, Method: Composition-based stats.
Identities = 58/277 (20%), Positives = 90/277 (32%), Gaps = 71/277 (25%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHK--EEWELALNTVVFMCATRFLPHYGSSC 60
R++QLD++ L+K L WS+F F+ + +E + +++ RF Y +
Sbjct: 16 RISQLDALELNKALEQLVWSQFTQCFHGFKPGLLARFEPEVKACLWLFLWRFTI-YSKNA 74
Query: 61 TYGSALSGVVFQCRKRTLYVVTVLAGYVWKKITHIIFNGPHCGNQMMWLKLYKWVNLLYH 120
T G + + +V L
Sbjct: 75 TVG---------------------------------------PSFGKVKQCVNFVVGLLK 95
Query: 121 GCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHSTRLIRDGSAIASEFYSNSVFAGLEYQN 180
+ NFL FL F + R +HS N G EY N
Sbjct: 96 LGGLINFLIFL-----QRGKFATLTERLLGIHSVFCKP----------QNIREVGFEYMN 140
Query: 181 RQLLWNALLEL--FSNTLLTKRGLL--------TFVKKPPRSRSTTTYKTVCPRCGGFPT 230
R+LLW+ E F L++ + L P + T C CG +PT
Sbjct: 141 RELLWHGFAEFLIFLLPLISVQKLKAKLSSWCIPLTGAPNSDNTLATSGKECSLCGEWPT 200
Query: 231 NPYQIACCRANYCYVCVVKALEWSM---CDACGSSGR 264
P+ I C +CY C + + M C CG+
Sbjct: 201 MPHTIG-CEHIFCYFCAKSSFLFDMYFTCPKCGTEVH 236
>ref|XP_457905.1| hypothetical protein DEHA0C05720g [Debaryomyces hansenii CBS767]
emb|CAG85956.1| unnamed protein product [Debaryomyces hansenii CBS767]
Length = 445
Score = 208 bits (531), Expect = 3e-52, Method: Composition-based stats.
Identities = 71/337 (21%), Positives = 109/337 (32%), Gaps = 96/337 (28%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFN--------TSEHKEEWELALNTVVFMCATRFLP 54
RV+QLD+ LD EL + + F +H E W L LN +VF
Sbjct: 10 RVSQLDANILDSELISLLKEQLTSIFQLHSTSWWTYDQHPELWSLLLNLMVFRL-----T 64
Query: 55 HYGSSCTYGSALSGVVF---------QCRKRTLYVVTVLAGYVWKKITHIIFNGPHC--- 102
+ S +YG+ L + KRTL ++ Y + K+ +++
Sbjct: 65 VWRSGSSYGALLQNLKLTDFKKGKLIGYSKRTLLCAVLVGDYFYSKLQSYLYSIDESEAS 124
Query: 103 --GNQMMWL------------KLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRA 148
+ L K+ +N + ++ NF FL + S +R
Sbjct: 125 RNASNFKLLNSIKSFFITHKTKILLGLNDCFKLLNLVNFTLFLVN-----GRYPSISHRL 179
Query: 149 FNVHSTRLIRDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFSNTLLTKR-------- 200
F + T ++ D N E+QNRQL+WN + E L +
Sbjct: 180 FGISLTPIVTDLLKF------NGNKVNFEFQNRQLVWNVMTEFLVFILPLMQLGKLKRMT 233
Query: 201 -GLLTFVKKPPRSRST-----TTYKT----VCPRCGGF-------------------PTN 231
+L+ KK R + T Y C C TN
Sbjct: 234 KKILSPYKKGQRHETGDIPIFTPYTNLPVSQCAICHNNNDIAATSSNKNSSISSSCMVTN 293
Query: 232 PYQIACCRANYCYVCVVKAL--------EWSMCDACG 260
PY C YCY+C+ + C CG
Sbjct: 294 PYV-TNCGHIYCYICIATKFNSLENTDSDSKGCLRCG 329
>ref|XP_645304.1| RING Zn finger-containing protein [Dictyostelium discoideum AX4]
gb|AAS45382.1| similar to Rattus norvegicus (Rat). Peroxisome assembly factor-1
(PAF-1) (Peroxin-2) (Peroxisomal membrane protein 3)
[Dictyostelium discoideum]
gb|EAL71269.1| RING Zn finger-containing protein [Dictyostelium discoideum AX4]
Length = 423
Score = 205 bits (521), Expect = 4e-51, Method: Composition-based stats.
Identities = 54/321 (16%), Positives = 97/321 (30%), Gaps = 77/321 (23%)
Query: 1 MSRVAQLDSIALDKELYGQFWSEFNAAFNTSEH--KEEWELALNTVVFMCATRFLPHYGS 58
+ RV+QLDS LD+E+ S+F F + ++ +N V+ L +
Sbjct: 108 IVRVSQLDSARLDEEILDLLRSQFMKIFTFFKPNFIHNFQPEINLVL-KSVIYKLSIFNL 166
Query: 59 SCTYGSALSGVVFQC-------------------RKRTLYVVTVLAGYVWKKITHIIFNG 99
TYG+ L + ++ +K ++ + ++W +I + N
Sbjct: 167 GTTYGNQLQNLTYRNEKAFDPIRGSDQLNKLTMRQKWLSGLINIGGEWLWTRINRYLINN 226
Query: 100 PHC-----GNQMMWLKLYKWVNLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHST 154
+ + + Y + NFL FL +++ + R ++
Sbjct: 227 NWSEHPPNDIRKKFWNFLNFAESAYKALALLNFLTFLFN-----GKYVTLVNRILHMRLV 281
Query: 155 RLIRDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFSN--TLLTKRGLLTFVKKPPRS 212
S EY NR L+W+ E L+ + +F+ +
Sbjct: 282 YAHPTLS----------RNISFEYMNRLLVWHGFTEFILFIMPLINIDRIKSFLYRLLVK 331
Query: 213 RSTTTYKT----------------------------VCPRCGGFPT-NPYQIACCRANYC 243
S CP C P PY C +C
Sbjct: 332 TSFGNSSGNNNNTASNPLQQLQKQQLLIQQQQMALAKCPICMNDPISMPYSAD-CGHLFC 390
Query: 244 YVCVVKALEWS---MCDACGS 261
Y C+ + C C S
Sbjct: 391 YYCIKTSCMIDSSFTCPRCNS 411
>ref|XP_001483143.1| hypothetical protein PGUG_05098 [Pichia guilliermondii ATCC 6260]
gb|EDK41000.1| hypothetical protein PGUG_05098 [Pichia guilliermondii ATCC 6260]
Length = 402
Score = 204 bits (519), Expect = 7e-51, Method: Composition-based stats.
Identities = 60/332 (18%), Positives = 106/332 (31%), Gaps = 86/332 (25%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSE--HKEEWELALNTVVFMCATRFLPHYGSSC 60
RV+QLD+ LD EL + ++ + E + L +++ L +
Sbjct: 10 RVSQLDADILDSELVSLLKQQLSSISHLHRGWWTYELQPELWSLLLNLVVFRLTVWKKGT 69
Query: 61 TYGSALSGVVFQC---------RKRTLYVVTVLAGYVWKKITHIIFN---GPHCGNQMMW 108
+YG L + KRT + ++ Y++ K +++ +
Sbjct: 70 SYGLGLQNLQLSNFKNGKIIGYSKRTALLAVIIGDYLFTKFQSYLYSVDEADVADAEKSS 129
Query: 109 LKLYKWVNLL---------------YHGCDVTNFLRFLAAEGPNARAFLSPLYRAFNVHS 153
L+ V L ++ NF FL + + + ++R +
Sbjct: 130 FALFGTVKRLILTNRTKILTSVSSSLRVLNLVNFTLFLIS-----GRYSTLIHRVLGISL 184
Query: 154 TRLIRDGSAIASEFYSNSVFAGLEYQNRQLLWNALLELFSNTLLTKR----------GLL 203
T ++ D N E+QNRQL+WN + E L + LL
Sbjct: 185 TPVVSDLLKF------NGSNVNFEFQNRQLVWNTMTEFLVFILPLLQLKKLRRMSSKMLL 238
Query: 204 TFVKKPPRSRSTTTYK--------TVCPRCGG-------------------FPTNPYQIA 236
+ KK +S+ T+ + C C TNP+
Sbjct: 239 PYRKKAKKSQDEETFSSAYSNLPISQCAICHNNSEKRARSLGKTPSSLSSFPITNPHV-T 297
Query: 237 CCRANYCYVCVVKAL--------EWSMCDACG 260
C YCY+C+ + C CG
Sbjct: 298 NCGHIYCYICIATKFNAIENNDGDEEGCLRCG 329
>ref|XP_001781834.1| predicted protein [Physcomitrella patens subsp. patens]
gb|EDQ53388.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 356
Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats.
Identities = 61/298 (20%), Positives = 94/298 (31%), Gaps = 60/298 (20%)
Query: 3 RVAQLDSIALDKELYGQFWSEFNAAFNTSEHKE--EWELALNTVVFMCATRFLPHYGSSC 60
RV Q+D+ LD E+ G + + F+ S+ +E LN + RF
Sbjct: 48 RVNQIDAARLDVEMTGMLKEQLSRVFSLSQPGLLLRYEPELNAFLEFLVWRFSIWVDK-P 106
Query: 61 TYGSALSGVVFQC-------------------------RKRTLYVVTVLAG-YVWKKITH 94
T G+AL + ++ ++ LY + V+ G Y W ++
Sbjct: 107 TPGNALMNLRYRNERSFNTYLKFGKAVRTGLEGAGLTKTQKILYCLLVVGGRYAWARLQL 166
Query: 95 IIFNGPHCGNQMMWLKLYKWV-----NLLYHGCDVTNFLRFLAAEGPNARAFLSPLYRAF 149
I Q W+ LY N + FL + + S + R
Sbjct: 167 ISAFQRWGDRQRTSWARRAWLLLQKAESLYKIAGFANLVLFLHS-----GRYPSTVERLL 221
Query: 150 NVHSTRLIRDGSAIASEFYSNSVFAGLEYQNRQLLWNALLE-------LFSNTLLTKRGL 202
D + EY NRQL+W+ E L + + K +
Sbjct: 222 GARLVYEKPD----------MNRAVSFEYMNRQLVWHEFSELLLLILPLLNMMSIRKVLM 271
Query: 203 LTFVKKPPRSRSTTTYKTVCPRCGGFPTN-PYQIACCRANYCYVCVVKALEWSMCDAC 259
F + P S + CP C P PY C YCY C+ C
Sbjct: 272 FPFSTQAPASSL---PEDACPICEACPIVTPYMALPCCHLYCYYCLRTRSLSDRNLKC 326
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
Posted date: May 23, 2008 5:56 PM
Number of letters in database: 883,778,997
Number of sequences in database: 2,617,685
Database: /host/Blast/data/nr_perl/nr.01
Posted date: May 23, 2008 5:54 PM
Number of letters in database: 976,759,346
Number of sequences in database: 2,761,413
Database: /host/Blast/data/nr_perl/nr.02
Posted date: May 23, 2008 5:48 PM
Number of letters in database: 374,670,760
Number of sequences in database: 1,165,270
Database: /host/Blast/data/nr_perl/nr.03
Posted date: Apr 28, 2009 5:40 PM
Number of letters in database: 114,943,120
Number of sequences in database: 354,819
Lambda K H
0.316 0.157 0.453
Lambda K H
0.267 0.0479 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,155,799,772
Number of Sequences: 6899187
Number of extensions: 176636460
Number of successful extensions: 661806
Number of sequences better than 10.0: 300
Number of HSP's better than 10.0 without gapping: 1542
Number of HSP's successfully gapped in prelim test: 12024
Number of HSP's that attempted gapping in prelim test: 650521
Number of HSP's gapped (non-prelim): 15312
length of query: 271
length of database: 2,350,152,223
effective HSP length: 132
effective length of query: 139
effective length of database: 1,439,459,539
effective search space: 200084875921
effective search space used: 200084875921
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.9 bits)
S2: 78 (34.4 bits)