BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= YNL214W__[Saccharomyces_cerevisiae]
(199 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
6,899,187 sequences; 2,350,152,223 total letters
Searching..................................................done
Results from round 1
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_014185.1| Peroxisomal membrane peroxin and subunit o... 373 e-102
gb|EDN62608.1| peroxin [Saccharomyces cerevisiae YJM789] 373 e-102
ref|XP_001645849.1| hypothetical protein Kpol_1054p38 [Vand... 138 2e-31
ref|NP_982771.1| ABL176Wp [Ashbya gossypii ATCC 10895] >gi|... 96 2e-18
ref|XP_448437.1| unnamed protein product [Candida glabrata]... 94 7e-18
ref|XP_453914.1| unnamed protein product [Kluyveromyces lac... 86 1e-15
ref|XP_963558.2| hypothetical protein NCU08697 [Neurospora ... 35 3.0
ref|XP_001796917.1| hypothetical protein SNOG_06549 [Phaeos... 35 3.4
gb|AAO59288.1| kinesin [Cochliobolus heterostrophus] 34 6.3
ref|YP_001577422.1| Na+/H+ antiporter [Lactobacillus helvet... 34 6.8
ref|XP_001023604.1| hypothetical protein TTHERM_00694390 [T... 34 7.6
sp|P37846|CHLB_EPHAL Light-independent protochlorophyllide ... 33 8.4
dbj|BAE95785.1| light-independent protochlorophyllide reduc... 33 8.9
dbj|BAE95783.1| light-independent protochlorophyllide reduc... 33 9.1
>ref|NP_014185.1| Peroxisomal membrane peroxin and subunit of the docking complex
that facilitates the import of peroxisomal matrix
proteins; required for peroxisome biogenesis; Pex17p
[Saccharomyces cerevisiae]
sp|P40155|PEX17_YEAST Peroxisomal membrane protein PEX17 (Peroxin-17)
emb|CAA55494.1| N1319 [Saccharomyces cerevisiae]
emb|CAA96116.1| unnamed protein product [Saccharomyces cerevisiae]
Length = 199
Score = 373 bits (958), Expect = e-102, Method: Composition-based stats.
Identities = 199/199 (100%), Positives = 199/199 (100%)
Query: 1 MTSINSFPRNIDWPSNIGIKKIEGTNPTVNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQK 60
MTSINSFPRNIDWPSNIGIKKIEGTNPTVNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQK
Sbjct: 1 MTSINSFPRNIDWPSNIGIKKIEGTNPTVNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQK 60
Query: 61 QYQQRNDFSLFVLLRLRRIIAQLQKRLVMTPVSSLGFNEQNNFVERSTQTSDDNIIREDN 120
QYQQRNDFSLFVLLRLRRIIAQLQKRLVMTPVSSLGFNEQNNFVERSTQTSDDNIIREDN
Sbjct: 61 QYQQRNDFSLFVLLRLRRIIAQLQKRLVMTPVSSLGFNEQNNFVERSTQTSDDNIIREDN 120
Query: 121 SHWAEMIYQLQNMKQELQYFNRSSGQPSESIDDFVFQIKMVTDQVELTDRSRAFSNKSRN 180
SHWAEMIYQLQNMKQELQYFNRSSGQPSESIDDFVFQIKMVTDQVELTDRSRAFSNKSRN
Sbjct: 121 SHWAEMIYQLQNMKQELQYFNRSSGQPSESIDDFVFQIKMVTDQVELTDRSRAFSNKSRN 180
Query: 181 IIQGIREIKGWFVNGQVPR 199
IIQGIREIKGWFVNGQVPR
Sbjct: 181 IIQGIREIKGWFVNGQVPR 199
>gb|EDN62608.1| peroxin [Saccharomyces cerevisiae YJM789]
Length = 199
Score = 373 bits (957), Expect = e-102, Method: Composition-based stats.
Identities = 198/199 (99%), Positives = 199/199 (100%)
Query: 1 MTSINSFPRNIDWPSNIGIKKIEGTNPTVNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQK 60
MTSINSFPRNIDWPSNIGIKK+EGTNPTVNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQK
Sbjct: 1 MTSINSFPRNIDWPSNIGIKKVEGTNPTVNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQK 60
Query: 61 QYQQRNDFSLFVLLRLRRIIAQLQKRLVMTPVSSLGFNEQNNFVERSTQTSDDNIIREDN 120
QYQQRNDFSLFVLLRLRRIIAQLQKRLVMTPVSSLGFNEQNNFVERSTQTSDDNIIREDN
Sbjct: 61 QYQQRNDFSLFVLLRLRRIIAQLQKRLVMTPVSSLGFNEQNNFVERSTQTSDDNIIREDN 120
Query: 121 SHWAEMIYQLQNMKQELQYFNRSSGQPSESIDDFVFQIKMVTDQVELTDRSRAFSNKSRN 180
SHWAEMIYQLQNMKQELQYFNRSSGQPSESIDDFVFQIKMVTDQVELTDRSRAFSNKSRN
Sbjct: 121 SHWAEMIYQLQNMKQELQYFNRSSGQPSESIDDFVFQIKMVTDQVELTDRSRAFSNKSRN 180
Query: 181 IIQGIREIKGWFVNGQVPR 199
IIQGIREIKGWFVNGQVPR
Sbjct: 181 IIQGIREIKGWFVNGQVPR 199
>ref|XP_001645849.1| hypothetical protein Kpol_1054p38 [Vanderwaltozyma polyspora DSM
70294]
gb|EDO17991.1| hypothetical protein Kpol_1054p38 [Vanderwaltozyma polyspora DSM
70294]
Length = 194
Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats.
Identities = 71/187 (37%), Positives = 115/187 (61%), Gaps = 1/187 (0%)
Query: 12 DWPSNIGIKKIEGTNPTVNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQKQYQQRNDFSLF 71
+WP+ + + + NPT+ AI+ + YN G + +Y ++ +P+L++QY+QR D +
Sbjct: 7 NWPNPVQVVRTTRPNPTIEAIRSIFYNSGFTVSVIYLLLEFIFKPSLERQYEQRVDLNGI 66
Query: 72 VLLRLRRIIAQLQKRLVMTPVSSLGFNEQNNFVERSTQTSDDN-IIREDNSHWAEMIYQL 130
LL++R ++ LQKRL TPVS +GFNE +E+STQT +D IIR+ + W + L
Sbjct: 67 CLLQVRHLVVSLQKRLKTTPVSIIGFNETEATIEKSTQTGEDKRIIRDYDDPWEGINDNL 126
Query: 131 QNMKQELQYFNRSSGQPSESIDDFVFQIKMVTDQVELTDRSRAFSNKSRNIIQGIREIKG 190
+ +L FN G+PS +++F Q K++TDQ+ +++ S +I QGIRE+KG
Sbjct: 127 EQCSFKLDLFNNDCGRPSIIVENFTDQTKVLTDQLNDYNQTNNKPKISHDITQGIREMKG 186
Query: 191 WFVNGQV 197
WFVNG +
Sbjct: 187 WFVNGVI 193
>ref|NP_982771.1| ABL176Wp [Ashbya gossypii ATCC 10895]
gb|AAS50595.1| ABL176Wp [Ashbya gossypii ATCC 10895]
Length = 207
Score = 95.5 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 60/207 (28%), Positives = 101/207 (48%), Gaps = 21/207 (10%)
Query: 10 NIDWPSNIGIKKIEGTNPTVNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQKQYQQRNDFS 69
+I WP+ I + T+ I GL YN G +++ +Y + ++ + P L + + QR + S
Sbjct: 3 HIKWPNEANIVPYKRPK-TLQQITGLFYNAGFLFSAMYLLTSLILRPLLLRSHNQRLEMS 61
Query: 70 LFVLLRLRRIIAQLQKRLVMTPVSSLGFNEQ--------NNFVERSTQTSDDNIIREDNS 121
LLRLR+++ L KRL TPV+ +GFNE+ +V+R +QTS ++ + N
Sbjct: 62 YITLLRLRKLVNDLAKRLKTTPVTVIGFNERVAEGTNSGVKYVDRCSQTSQED-FEQANM 120
Query: 122 H----------WAEMIYQLQNMKQELQYFNRSSGQPSESIDDFVFQIKMVTDQVELTDRS 171
H W + ++ L F + + D F F+ K++ D ++ R
Sbjct: 121 HLPHTDPSTENWERINGRISQAITSLNSFAYENAHTLDHCDRFSFEAKLLADSLD-QHRD 179
Query: 172 RAFSNKSRNIIQGIREIKGWFVNGQVP 198
+F+ K I I E+K WF+ G VP
Sbjct: 180 TSFNKKCTEISDTIIELKSWFIRGSVP 206
>ref|XP_448437.1| unnamed protein product [Candida glabrata]
emb|CAG61398.1| unnamed protein product [Candida glabrata CBS 138]
Length = 211
Score = 93.6 bits (231), Expect = 7e-18, Method: Composition-based stats.
Identities = 58/202 (28%), Positives = 99/202 (49%), Gaps = 14/202 (6%)
Query: 10 NIDWPSNIGIKKIEGTNPTVNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQKQYQQRNDFS 69
+I WP I+ + N T+ I+ + N G ++ Y ++ V+P+L++QY QR + +
Sbjct: 8 SIQWPDPQRIRNYKARNKTIRTIQSIFSNTGLLFTIFYVAVSTIVQPSLERQYNQRIELT 67
Query: 70 LFVLLRLRRIIAQLQKRLVMTPVSSLGF-NEQNNFVERSTQTSDDNIIRE---------- 118
LL +RR+ +L +RL S L + + +R TQT I +
Sbjct: 68 AGALLEVRRLTNKLLRRLKSKNSSELELRSNTQEYADRCTQTESRYITDDFESDDDMHND 127
Query: 119 ---DNSHWAEMIYQLQNMKQELQYFNRSSGQPSESIDDFVFQIKMVTDQVELTDRSRAFS 175
++ W + +L +K L +N S +PS ++++ FQ K+V DQ+ + +
Sbjct: 128 SDDNSITWNIISKKLVEVKDSLNRYNESCDRPSINMENLTFQSKLVVDQLSVAKDADKLG 187
Query: 176 NKSRNIIQGIREIKGWFVNGQV 197
SR + IRE+KGWFVNG V
Sbjct: 188 ELSRTSVNNIREMKGWFVNGLV 209
>ref|XP_453914.1| unnamed protein product [Kluyveromyces lactis]
emb|CAH01010.1| unnamed protein product [Kluyveromyces lactis NRRL Y-1140]
Length = 195
Score = 85.9 bits (211), Expect = 1e-15, Method: Composition-based stats.
Identities = 55/193 (28%), Positives = 100/193 (51%), Gaps = 7/193 (3%)
Query: 12 DWPSNIGIKKIEGTNPTVNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQKQYQQRNDFSLF 71
+WP+ I + + TV I+ L Y+ G + +Y I + + L K Y QR + S
Sbjct: 4 NWPAEKDIMPYKKPS-TVKEIELLFYHTGVTVSAIYVFIHLVLSRVLSKNYDQRLELSHD 62
Query: 72 VLLRLRRIIAQLQKRLVMTPVSSLGFN-----EQNNFVERSTQTSDDNIIREDNSHWAEM 126
VL+R+RR++ L R+ T V+++G N E +V+R QT + ++N+ W +
Sbjct: 63 VLMRIRRLVNSLMSRVKSTSVTAVGDNQRSIQETKVYVDRCQQTGEQLESVDENAGWTRI 122
Query: 127 IYQLQNMKQELQYFNRSSGQPSESIDDFVFQIKMVTDQVELTDRSRAFSNKSRNIIQGIR 186
+L + L+ ++ S+ + F+ K+ TDQ++ + NIIQ +R
Sbjct: 123 NLRLNTLTDVLRIYHTDMRNISD-FESLSFKTKLFTDQLKDSSWRNKKQEGYSNIIQSVR 181
Query: 187 EIKGWFVNGQVPR 199
E+KGWF++G++P+
Sbjct: 182 EMKGWFIHGRIPK 194
>ref|XP_963558.2| hypothetical protein NCU08697 [Neurospora crassa OR74A]
gb|EAA34322.2| predicted protein [Neurospora crassa OR74A]
Length = 950
Score = 35.0 bits (79), Expect = 3.0, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 98 NEQNNFVERSTQTSDDNI------IREDNSHWAEMIYQLQNMKQELQYFNRSSGQPSESI 151
++Q + + R Q ++ N+ +R +++Y+L N + ELQ + + +E++
Sbjct: 602 DQQKDIIRRFCQYAEHNLSPEEEKLRRFREQSKDLLYKLGNQQNELQRLRKWAQSTAEAM 661
Query: 152 DDFVFQIKMVTDQVELTDRSR 172
DD +FQ + V+ + +R
Sbjct: 662 DDLIFQKQQQASLVQAWESAR 682
>ref|XP_001796917.1| hypothetical protein SNOG_06549 [Phaeosphaeria nodorum SN15]
gb|EAT86380.2| hypothetical protein SNOG_06549 [Phaeosphaeria nodorum SN15]
Length = 954
Score = 35.0 bits (79), Expect = 3.4, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 90 TPVSSLGFNEQNNFVERSTQTSDDNIIREDNSHWAEMIYQLQNMKQELQYF---NRSSGQ 146
TP L +E++ F++R + D I E S A+++ QL K ELQY+ + + +
Sbjct: 440 TPSIPLEKDEKDEFLKRENELQDQ--IAEKESQLAKVVDQLTTAKDELQYYKDRDSKTNK 497
Query: 147 PSESIDDFVFQIKMVTDQVELTDRSRAFS 175
+E + + ++KM ++++ + S
Sbjct: 498 DNERMTSELNEMKMQVEKIQFESKEAQIS 526
>gb|AAO59288.1| kinesin [Cochliobolus heterostrophus]
Length = 603
Score = 33.9 bits (76), Expect = 6.3, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 90 TPVSSLGFNEQNNFVERSTQTSDDNIIREDNSHWAEMIYQLQNMKQELQYFNRSSGQPSE 149
TP L +E+++F+ R + D + E S A++ QL+ +K ELQY+ + ++
Sbjct: 441 TPSIPLDKDEKDDFLRRENELQDQ--VAERESQLAKVEDQLKTVKDELQYYKDRDAKTNK 498
Query: 150 SIDDFVFQIKMVTDQVE 166
+ ++ + QVE
Sbjct: 499 DNERITIELNEMKMQVE 515
>ref|YP_001577422.1| Na+/H+ antiporter [Lactobacillus helveticus DPC 4571]
gb|ABX27131.1| Na+/H+ antiporter [Lactobacillus helveticus DPC 4571]
Length = 530
Score = 33.9 bits (76), Expect = 6.8, Method: Composition-based stats.
Identities = 35/150 (23%), Positives = 69/150 (46%), Gaps = 15/150 (10%)
Query: 29 VNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQKQYQQRNDFSLFVLLRLRRIIAQLQKRLV 88
V++ L+++ G I+ + F +A TL + DF L ++ + I+ L
Sbjct: 343 VSSKGALIFSLGGIHGAVTFALAY----TLSEMSVNIADFHLILVSEIVLILLSL----- 393
Query: 89 MTPVSSLGFNEQNNFVERSTQTSDDNIIREDNSHWA----EMIYQLQNMKQELQYFNRSS 144
+ P + F + + + Q + N +R+ H+A IY + ++++L+ F+ +
Sbjct: 394 IVPTIAFRFILEKDKPDLD-QRKEVNRVRKAMVHYALKQMNQIYLPKKIRKQLE-FDLRT 451
Query: 145 GQPSESIDDFVFQIKMVTDQVELTDRSRAF 174
SI DF+ ++K Q ELTD + F
Sbjct: 452 QMNQTSIKDFIKEVKYTVKQKELTDDQKEF 481
>ref|XP_001023604.1| hypothetical protein TTHERM_00694390 [Tetrahymena thermophila SB210]
gb|EAS03359.1| hypothetical protein TTHERM_00694390 [Tetrahymena thermophila SB210]
Length = 6523
Score = 33.9 bits (76), Expect = 7.6, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 99 EQNNFVERSTQTSDDNIIREDNSHWAEMIYQLQNMKQ--ELQYFNRSSGQPSESIDDFVF 156
E+ N+ +R Q I + AE++ QN++Q + + NR + S I+DF
Sbjct: 1023 EKKNYEQRKKQRKKYREIFYSQNETAEIVLIKQNIQQKEDKKLVNRGNKVISNQIEDFQT 1082
Query: 157 QIKMVTDQVELTDRSRAFSNKSRNIIQGIREIKGWFVNGQ 196
+ K V QV T+ ++ + N+ +N + I + + F+N Q
Sbjct: 1083 ENKTVKLQVGKTNLTKQYFNEKQNEFESITKGRFDFINFQ 1122
>sp|P37846|CHLB_EPHAL Light-independent protochlorophyllide reductase subunit B (LI-POR
subunit B) (DPOR subunit B)
gb|AAC49429.1| light-independent protochlorophyllide reductase [Ephedra altissima]
Length = 509
Score = 33.5 bits (75), Expect = 8.4, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 87 LVMTPV--SSLGFNEQNNFVERSTQTSDDNIIREDNSHWAEMIYQLQNMKQELQYFNRS- 143
+++TP SS+ + NFV+R++ SD NII D H+ + ++Q + L+ R
Sbjct: 89 IILTPTCTSSILQEDLQNFVDRASVISDSNIILADVDHY--QVNEIQAADRTLEQVVRFY 146
Query: 144 -SGQPSESIDDFVFQIKMV 161
S Q E +D F+ + V
Sbjct: 147 LSKQKKEKLDRFLTDVPSV 165
>dbj|BAE95785.1| light-independent protochlorophyllide reductase [Ephedra
equisetina]
Length = 501
Score = 33.5 bits (75), Expect = 8.9, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 87 LVMTPV--SSLGFNEQNNFVERSTQTSDDNIIREDNSHWAEMIYQLQNMKQELQYFNRS- 143
+++TP SS+ + NFV+R++ SD NII D H+ + ++Q + L+ R
Sbjct: 89 IILTPTCTSSILQEDLQNFVDRASVISDSNIILADVDHY--QVNEIQAADRTLEQVVRFY 146
Query: 144 -SGQPSESIDDFVFQIKMV 161
S Q E +D F+ + V
Sbjct: 147 LSKQKKEKLDRFLTDVPSV 165
>dbj|BAE95783.1| light-independent protochlorophyllide reductase [Ephedra sinica]
dbj|BAE95784.1| light-independent protochlorophyllide reductase [Ephedra
intermedia]
dbj|BAE95786.1| light-independent protochlorophyllide reductase [Ephedra
equisetina]
Length = 501
Score = 33.5 bits (75), Expect = 9.1, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 87 LVMTPV--SSLGFNEQNNFVERSTQTSDDNIIREDNSHWAEMIYQLQNMKQELQYFNRS- 143
+++TP SS+ + NFV+R++ SD NII D H+ + ++Q + L+ R
Sbjct: 89 IILTPTCTSSILQEDLQNFVDRASVISDSNIILADVDHY--QVNEIQAADRTLEQVVRFY 146
Query: 144 -SGQPSESIDDFVFQIKMV 161
S Q E +D F+ + V
Sbjct: 147 LSKQKKEKLDRFLTDVPSV 165
Searching..................................................done
Results from round 2
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
gb|EDN62608.1| peroxin [Saccharomyces cerevisiae YJM789] 329 8e-89
ref|NP_014185.1| Peroxisomal membrane peroxin and subunit o... 328 1e-88
ref|XP_001645849.1| hypothetical protein Kpol_1054p38 [Vand... 295 1e-78
ref|XP_453914.1| unnamed protein product [Kluyveromyces lac... 277 4e-73
ref|NP_982771.1| ABL176Wp [Ashbya gossypii ATCC 10895] >gi|... 273 5e-72
ref|XP_448437.1| unnamed protein product [Candida glabrata]... 259 8e-68
Sequences not found previously or not previously below threshold:
gb|ABC70471.1| peroxin 17 [Pichia angusta] 58 6e-07
gb|AAF19606.1| Pex17p [Pichia pastoris] 43 0.009
ref|ZP_01118042.1| spermidine synthase [Polaribacter irgens... 40 0.076
ref|YP_822822.1| integral membrane sensor signal transducti... 40 0.094
ref|XP_001384161.2| hypothetical protein PICST_44738 [Pichi... 39 0.15
ref|XP_001229612.1| hypothetical protein CHGG_03096 [Chaeto... 39 0.16
ref|NP_047719.1| LdOrf-82 peptide [Lymantria dispar nucleop... 39 0.20
ref|XP_001671247.1| Hypothetical protein CBG01673 [Caenorha... 39 0.28
ref|XP_532269.2| PREDICTED: similar to laminin, alpha 4 pre... 38 0.29
ref|YP_928250.1| GGDEF family protein [Shewanella amazonens... 38 0.36
ref|NP_809570.1| ATP-dependent DNA helicase [Bacteroides th... 38 0.41
ref|ZP_01959253.1| hypothetical protein BACCAC_00855 [Bacte... 38 0.41
ref|YP_001127972.1| translation initiation factor IF-2 [Str... 37 0.57
ref|NP_665299.1| translation initiation factor IF-2 [Strept... 37 0.58
ref|YP_603016.1| translation initiation factor IF-2 [Strept... 37 0.59
ref|NP_801634.1| translation initiation factor IF-2 [Strept... 37 0.60
ref|NP_269745.1| translation initiation factor IF-2 [Strept... 37 0.60
ref|NP_607759.1| translation initiation factor IF-2 [Strept... 37 0.62
ref|ZP_00365886.1| COG0532: Translation initiation factor 2... 37 0.63
ref|YP_001199212.1| translation initiation factor IF-2 [Str... 37 0.77
dbj|BAD61436.1| beta3-glucuronyltransferase -like [Oryza sa... 37 0.78
ref|ZP_01254880.1| spermidine synthase [Psychroflexus torqu... 37 0.84
gb|AAC52982.1| laminin alpha 4 chain [Mus musculus] 37 0.85
ref|YP_001449862.1| Translation initiation factor IF-2 [Str... 37 0.87
ref|YP_001035823.1| translation initiation factor IF-2 [Str... 37 1.0
ref|ZP_02065390.1| hypothetical protein BACOVA_02365 [Bacte... 37 1.0
gb|EAY72617.1| hypothetical protein OsI_000464 [Oryza sativ... 37 1.1
gb|EAZ10617.1| hypothetical protein OsJ_000442 [Oryza sativ... 36 1.1
ref|ZP_00590833.1| PAS [Pelodictyon phaeoclathratiforme BU-... 36 1.3
ref|ZP_00532148.1| PAS [Chlorobium phaeobacteroides BS1] >g... 36 1.4
gb|AAA67449.1| P120 36 1.6
gb|EDN74125.1| hypothetical protein MHA_1194 [Mannheimia ha... 36 1.6
ref|NP_692046.1| methyl-accepting chemotaxis protein [Ocean... 36 1.7
ref|ZP_01166343.1| PAS protein [Oceanospirillum sp. MED92] ... 36 1.8
ref|YP_001785018.1| conserved hypothetical protein [Haemoph... 36 1.8
ref|ZP_02863218.1| chromosome partition protein smc [Clostr... 36 1.9
ref|YP_001039336.1| histidine kinase [Clostridium thermocel... 36 2.0
ref|YP_175724.1| translation initiation factor IF-2 [Bacill... 36 2.1
ref|ZP_00233513.1| translation initiation factor IF-2 [List... 36 2.2
ref|ZP_00231841.1| translation initiation factor IF-2 [List... 36 2.2
ref|NP_470698.1| translation initiation factor IF-2 [Lister... 36 2.2
ref|NP_464850.1| translation initiation factor IF-2 [Lister... 36 2.2
ref|YP_013940.1| translation initiation factor IF-2 [Lister... 36 2.2
ref|ZP_01932614.1| translation initiation factor IF-2 [List... 36 2.2
ref|ZP_01929933.1| translation initiation factor IF-2 [List... 36 2.2
ref|ZP_02287092.1| translation initiation factor IF-2 [List... 36 2.2
ref|ZP_02309122.1| translation initiation factor IF-2 [List... 36 2.2
ref|ZP_02687811.1| translation initiation factor IF-2 [List... 36 2.2
ref|ZP_01927223.1| translation initiation factor IF-2 [List... 36 2.2
ref|YP_001248532.1| ATP synthase subunit B [Orientia tsutsu... 36 2.3
ref|NP_245253.1| hypothetical protein PM0316 [Pasteurella m... 35 2.4
ref|YP_849537.1| translation initiation factor IF-2 [Lister... 35 2.5
ref|XP_001014160.1| hypothetical protein TTHERM_00222320 [T... 35 2.8
ref|ZP_01386703.1| CheB methylesterase:MCP methyltransferas... 35 2.9
ref|XP_001379235.1| PREDICTED: similar to laminin, alpha 4,... 35 3.2
ref|YP_001421241.1| InfB [Bacillus amyloliquefaciens FZB42]... 35 3.2
ref|XP_001424196.1| hypothetical protein GSPATT00027830001 ... 35 3.3
ref|XP_001448333.1| hypothetical protein GSPATT00015795001 ... 35 3.7
ref|YP_001884162.1| hypothetical membrane spanning protein ... 35 3.9
ref|ZP_02760199.1| translation initiation factor IF-2 [Stap... 35 4.0
ref|YP_079061.1| initiation factor IF-2 [Bacillus lichenifo... 35 4.0
ref|YP_186145.1| translation initiation factor IF-2 [Staphy... 35 4.1
ref|NP_616942.1| pneumococcal surface protein [Methanosarci... 34 4.5
ref|YP_001375696.1| translation initiation factor IF-2 [Bac... 34 4.7
ref|XP_001526034.1| hypothetical protein LELG_02592 [Lodder... 34 4.8
ref|XP_696859.2| PREDICTED: hypothetical protein [Danio rerio] 34 5.0
emb|CAB71002.1| TATA box binding protein (TBP) associated f... 34 5.2
ref|XP_001583650.1| hypothetical protein TVAG_475920 [Trich... 34 5.2
ref|ZP_02972662.1| hypothetical protein PCC7424DRAFT_1035 [... 34 5.2
sp|P57092|C18CA_PAEPP Parasporal crystal protein cry18Ca (P... 34 5.4
ref|YP_944422.1| MCP methyltransferase, CheR-type [Psychrom... 34 6.3
ref|YP_001918078.1| hypothetical protein Nther_1919 [Natran... 34 6.5
sp|P70388|RAD50_MOUSE DNA repair protein RAD50 (mRad50) >gi... 34 8.3
ref|NP_033038.2| RAD50 homolog [Mus musculus] >gi|56206965|... 34 8.7
ref|XP_001456344.1| hypothetical protein GSPATT00022116001 ... 34 8.7
>gb|EDN62608.1| peroxin [Saccharomyces cerevisiae YJM789]
Length = 199
Score = 329 bits (843), Expect = 8e-89, Method: Composition-based stats.
Identities = 198/199 (99%), Positives = 199/199 (100%)
Query: 1 MTSINSFPRNIDWPSNIGIKKIEGTNPTVNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQK 60
MTSINSFPRNIDWPSNIGIKK+EGTNPTVNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQK
Sbjct: 1 MTSINSFPRNIDWPSNIGIKKVEGTNPTVNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQK 60
Query: 61 QYQQRNDFSLFVLLRLRRIIAQLQKRLVMTPVSSLGFNEQNNFVERSTQTSDDNIIREDN 120
QYQQRNDFSLFVLLRLRRIIAQLQKRLVMTPVSSLGFNEQNNFVERSTQTSDDNIIREDN
Sbjct: 61 QYQQRNDFSLFVLLRLRRIIAQLQKRLVMTPVSSLGFNEQNNFVERSTQTSDDNIIREDN 120
Query: 121 SHWAEMIYQLQNMKQELQYFNRSSGQPSESIDDFVFQIKMVTDQVELTDRSRAFSNKSRN 180
SHWAEMIYQLQNMKQELQYFNRSSGQPSESIDDFVFQIKMVTDQVELTDRSRAFSNKSRN
Sbjct: 121 SHWAEMIYQLQNMKQELQYFNRSSGQPSESIDDFVFQIKMVTDQVELTDRSRAFSNKSRN 180
Query: 181 IIQGIREIKGWFVNGQVPR 199
IIQGIREIKGWFVNGQVPR
Sbjct: 181 IIQGIREIKGWFVNGQVPR 199
>ref|NP_014185.1| Peroxisomal membrane peroxin and subunit of the docking complex
that facilitates the import of peroxisomal matrix
proteins; required for peroxisome biogenesis; Pex17p
[Saccharomyces cerevisiae]
sp|P40155|PEX17_YEAST Peroxisomal membrane protein PEX17 (Peroxin-17)
emb|CAA55494.1| N1319 [Saccharomyces cerevisiae]
emb|CAA96116.1| unnamed protein product [Saccharomyces cerevisiae]
Length = 199
Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats.
Identities = 199/199 (100%), Positives = 199/199 (100%)
Query: 1 MTSINSFPRNIDWPSNIGIKKIEGTNPTVNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQK 60
MTSINSFPRNIDWPSNIGIKKIEGTNPTVNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQK
Sbjct: 1 MTSINSFPRNIDWPSNIGIKKIEGTNPTVNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQK 60
Query: 61 QYQQRNDFSLFVLLRLRRIIAQLQKRLVMTPVSSLGFNEQNNFVERSTQTSDDNIIREDN 120
QYQQRNDFSLFVLLRLRRIIAQLQKRLVMTPVSSLGFNEQNNFVERSTQTSDDNIIREDN
Sbjct: 61 QYQQRNDFSLFVLLRLRRIIAQLQKRLVMTPVSSLGFNEQNNFVERSTQTSDDNIIREDN 120
Query: 121 SHWAEMIYQLQNMKQELQYFNRSSGQPSESIDDFVFQIKMVTDQVELTDRSRAFSNKSRN 180
SHWAEMIYQLQNMKQELQYFNRSSGQPSESIDDFVFQIKMVTDQVELTDRSRAFSNKSRN
Sbjct: 121 SHWAEMIYQLQNMKQELQYFNRSSGQPSESIDDFVFQIKMVTDQVELTDRSRAFSNKSRN 180
Query: 181 IIQGIREIKGWFVNGQVPR 199
IIQGIREIKGWFVNGQVPR
Sbjct: 181 IIQGIREIKGWFVNGQVPR 199
>ref|XP_001645849.1| hypothetical protein Kpol_1054p38 [Vanderwaltozyma polyspora DSM
70294]
gb|EDO17991.1| hypothetical protein Kpol_1054p38 [Vanderwaltozyma polyspora DSM
70294]
Length = 194
Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats.
Identities = 71/187 (37%), Positives = 115/187 (61%), Gaps = 1/187 (0%)
Query: 12 DWPSNIGIKKIEGTNPTVNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQKQYQQRNDFSLF 71
+WP+ + + + NPT+ AI+ + YN G + +Y ++ +P+L++QY+QR D +
Sbjct: 7 NWPNPVQVVRTTRPNPTIEAIRSIFYNSGFTVSVIYLLLEFIFKPSLERQYEQRVDLNGI 66
Query: 72 VLLRLRRIIAQLQKRLVMTPVSSLGFNEQNNFVERSTQTSDDN-IIREDNSHWAEMIYQL 130
LL++R ++ LQKRL TPVS +GFNE +E+STQT +D IIR+ + W + L
Sbjct: 67 CLLQVRHLVVSLQKRLKTTPVSIIGFNETEATIEKSTQTGEDKRIIRDYDDPWEGINDNL 126
Query: 131 QNMKQELQYFNRSSGQPSESIDDFVFQIKMVTDQVELTDRSRAFSNKSRNIIQGIREIKG 190
+ +L FN G+PS +++F Q K++TDQ+ +++ S +I QGIRE+KG
Sbjct: 127 EQCSFKLDLFNNDCGRPSIIVENFTDQTKVLTDQLNDYNQTNNKPKISHDITQGIREMKG 186
Query: 191 WFVNGQV 197
WFVNG +
Sbjct: 187 WFVNGVI 193
>ref|XP_453914.1| unnamed protein product [Kluyveromyces lactis]
emb|CAH01010.1| unnamed protein product [Kluyveromyces lactis NRRL Y-1140]
Length = 195
Score = 277 bits (708), Expect = 4e-73, Method: Composition-based stats.
Identities = 55/193 (28%), Positives = 100/193 (51%), Gaps = 7/193 (3%)
Query: 12 DWPSNIGIKKIEGTNPTVNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQKQYQQRNDFSLF 71
+WP+ I + + TV I+ L Y+ G + +Y I + + L K Y QR + S
Sbjct: 4 NWPAEKDIMPYKKPS-TVKEIELLFYHTGVTVSAIYVFIHLVLSRVLSKNYDQRLELSHD 62
Query: 72 VLLRLRRIIAQLQKRLVMTPVSSLGFN-----EQNNFVERSTQTSDDNIIREDNSHWAEM 126
VL+R+RR++ L R+ T V+++G N E +V+R QT + ++N+ W +
Sbjct: 63 VLMRIRRLVNSLMSRVKSTSVTAVGDNQRSIQETKVYVDRCQQTGEQLESVDENAGWTRI 122
Query: 127 IYQLQNMKQELQYFNRSSGQPSESIDDFVFQIKMVTDQVELTDRSRAFSNKSRNIIQGIR 186
+L + L+ ++ S+ + F+ K+ TDQ++ + NIIQ +R
Sbjct: 123 NLRLNTLTDVLRIYHTDMRNISD-FESLSFKTKLFTDQLKDSSWRNKKQEGYSNIIQSVR 181
Query: 187 EIKGWFVNGQVPR 199
E+KGWF++G++P+
Sbjct: 182 EMKGWFIHGRIPK 194
>ref|NP_982771.1| ABL176Wp [Ashbya gossypii ATCC 10895]
gb|AAS50595.1| ABL176Wp [Ashbya gossypii ATCC 10895]
Length = 207
Score = 273 bits (698), Expect = 5e-72, Method: Composition-based stats.
Identities = 60/207 (28%), Positives = 100/207 (48%), Gaps = 21/207 (10%)
Query: 10 NIDWPSNIGIKKIEGTNPTVNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQKQYQQRNDFS 69
+I WP+ I + T+ I GL YN G +++ +Y + ++ + P L + + QR + S
Sbjct: 3 HIKWPNEANIVPYKRP-KTLQQITGLFYNAGFLFSAMYLLTSLILRPLLLRSHNQRLEMS 61
Query: 70 LFVLLRLRRIIAQLQKRLVMTPVSSLGFNEQ--------NNFVERSTQTSDDNIIREDNS 121
LLRLR+++ L KRL TPV+ +GFNE+ +V+R +QTS ++ + N
Sbjct: 62 YITLLRLRKLVNDLAKRLKTTPVTVIGFNERVAEGTNSGVKYVDRCSQTSQED-FEQANM 120
Query: 122 H----------WAEMIYQLQNMKQELQYFNRSSGQPSESIDDFVFQIKMVTDQVELTDRS 171
H W + ++ L F + + D F F+ K++ D + R
Sbjct: 121 HLPHTDPSTENWERINGRISQAITSLNSFAYENAHTLDHCDRFSFEAKLLADSL-DQHRD 179
Query: 172 RAFSNKSRNIIQGIREIKGWFVNGQVP 198
+F+ K I I E+K WF+ G VP
Sbjct: 180 TSFNKKCTEISDTIIELKSWFIRGSVP 206
>ref|XP_448437.1| unnamed protein product [Candida glabrata]
emb|CAG61398.1| unnamed protein product [Candida glabrata CBS 138]
Length = 211
Score = 259 bits (662), Expect = 8e-68, Method: Composition-based stats.
Identities = 58/202 (28%), Positives = 99/202 (49%), Gaps = 14/202 (6%)
Query: 10 NIDWPSNIGIKKIEGTNPTVNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQKQYQQRNDFS 69
+I WP I+ + N T+ I+ + N G ++ Y ++ V+P+L++QY QR + +
Sbjct: 8 SIQWPDPQRIRNYKARNKTIRTIQSIFSNTGLLFTIFYVAVSTIVQPSLERQYNQRIELT 67
Query: 70 LFVLLRLRRIIAQLQKRLVMTPVSSLGF-NEQNNFVERSTQTSDDNIIRE---------- 118
LL +RR+ +L +RL S L + + +R TQT I +
Sbjct: 68 AGALLEVRRLTNKLLRRLKSKNSSELELRSNTQEYADRCTQTESRYITDDFESDDDMHND 127
Query: 119 ---DNSHWAEMIYQLQNMKQELQYFNRSSGQPSESIDDFVFQIKMVTDQVELTDRSRAFS 175
++ W + +L +K L +N S +PS ++++ FQ K+V DQ+ + +
Sbjct: 128 SDDNSITWNIISKKLVEVKDSLNRYNESCDRPSINMENLTFQSKLVVDQLSVAKDADKLG 187
Query: 176 NKSRNIIQGIREIKGWFVNGQV 197
SR + IRE+KGWFVNG V
Sbjct: 188 ELSRTSVNNIREMKGWFVNGLV 209
>gb|ABC70471.1| peroxin 17 [Pichia angusta]
Length = 246
Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 36/200 (18%), Positives = 76/200 (38%), Gaps = 41/200 (20%)
Query: 11 IDWPSNIGIKKIEGTNPTVNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQKQYQQRNDFSL 70
I +P + G + T+ + LL G A Y V+ + V+P L+ +++R D +
Sbjct: 6 IAFPEDAGPVSPARPHGTLRYVLRLLTLSGYGLATFYVVVLLVVKPMLKLSFERRRDLAN 65
Query: 71 FVLLRLRRIIAQLQKRLVMTPVSSLGFNEQNN-FVER--STQTSDDNIIREDNSH----- 122
LR + L +++ P S+ N + + + ST+T +D+++ ++
Sbjct: 66 HCFGHLRALYGGLVEKVKFVP--SVELNYRGVLYKDSMCSTETDEDDVVVQEEHTRGVRF 123
Query: 123 --------WAEMIY--------QLQNMKQELQ-----YFNRSSGQPS----------ESI 151
+ E+ L +K L ++ + PS +
Sbjct: 124 DDEVSRRDYNELNLSQTVILGQNLDRLKDTLNKIRVSSYHHKNSVPSFGGRLAASDVSEM 183
Query: 152 DDFVFQIKMVTDQVELTDRS 171
+FQ+K + + VE+
Sbjct: 184 QPLIFQVKQLKNCVEMVSSD 203
>gb|AAF19606.1| Pex17p [Pichia pastoris]
Length = 267
Score = 43.3 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 2/112 (1%)
Query: 9 RNIDWPSNIGIKKIEGTNPT-VNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQKQYQQRND 67
+ I +P N+ ++ P + + LLY GS +Y + + P L+ QY++R
Sbjct: 8 QAIAFPENLPPSRLVTPKPAALLYLTRLLYGSGSFLVVVYALALFLIRPMLKLQYERRGS 67
Query: 68 FSLFVLLRLRRIIAQLQKRLVMTPVSSLGFNEQNNFVERSTQTSDDNIIRED 119
+ L +L + + KRL P + + + + QT ++
Sbjct: 68 YLNHCLDKLNAMYGLVAKRLRFVPEVRVKYGNT-VYSDAGMQTDPKKEEVDN 118
>ref|ZP_01118042.1| spermidine synthase [Polaribacter irgensii 23-P]
gb|EAR12551.1| spermidine synthase [Polaribacter irgensii 23-P]
Length = 518
Score = 40.2 bits (93), Expect = 0.076, Method: Composition-based stats.
Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 9/119 (7%)
Query: 34 GLLYNGGSIYAFLYFVIAMFVEPTLQKQYQQRNDFSLFVLLRLRRIIAQLQKRLVMTPVS 93
GL Y + + F++A+ V + + +R+ L +L + + A L + T
Sbjct: 164 GLAY-TPFVLGIINFLVALIVFYRFKDKINKRSTLKLQAILFV--VFAALITGISFTE-P 219
Query: 94 SLGFNEQNNFVER---STQTSDDNI--IREDNSHWAEMIYQLQNMKQELQYFNRSSGQP 147
+ + EQ + ++ S QT I N HW + LQ + + ++ P
Sbjct: 220 IIEWGEQKKYKDKVVYSEQTEYQKIVLTEWKNEHWLYLNGNLQFCSIDEKMYHEPLVHP 278
>ref|YP_822822.1| integral membrane sensor signal transduction histidine kinase
[Solibacter usitatus Ellin6076]
gb|ABJ82537.1| integral membrane sensor signal transduction histidine kinase
[Solibacter usitatus Ellin6076]
Length = 487
Score = 40.2 bits (93), Expect = 0.094, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 16/99 (16%)
Query: 69 SLFVLL---RLRRIIAQLQKRLV--MTPVSSLGFNEQNNFVERSTQTSDDNI---IREDN 120
S+ LL RLR +IA RL T VS+ +++ R+ + S D + + E N
Sbjct: 170 SVIALLISSRLRALIATPISRLAQAATSVSA-----TSDYSIRAQKLSGDELGVLVDEFN 224
Query: 121 SHWAEMIYQ---LQNMKQELQYFNRSSGQPSESIDDFVF 156
+ + L+ L+ N S + +E ++ F F
Sbjct: 225 QMLERVQLRDQELKQALDSLKSTNESLARSNEDLERFAF 263
>ref|XP_001384161.2| hypothetical protein PICST_44738 [Pichia stipitis CBS 6054]
gb|ABN66132.2| predicted protein [Pichia stipitis CBS 6054]
Length = 231
Score = 39.4 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 37/218 (16%), Positives = 69/218 (31%), Gaps = 36/218 (16%)
Query: 14 PSNIGIKKIEGTNPTVNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQKQYQQRNDFSLFVL 73
P+ + + V + L + Y V ++P L+ +R +
Sbjct: 16 PNAYTLSPASRQSRIVVYLIKLTHGSAVALVLAYAVGFFVLKPLLETNAVRRLELLELFR 75
Query: 74 LRLRRIIAQLQKRLVMTPVSSLGFNEQ-NNFVERSTQTSDDNIIREDNSH---------- 122
+LR L R+ P+ + N + + QT D+ + N H
Sbjct: 76 GKLRDCYLNLIGRVSYIPIVAKKKNNDGKLYADAVIQT--DDSFLDKNRHRNKAEEEEEE 133
Query: 123 -------WAEMIYQLQNMKQELQYFNRSSGQPSESIDDFVFQIKMVTDQVELT------- 168
M+ +L + ++L S + F IK ++ +L
Sbjct: 134 LAKDKLYQNRMVKKLNKLSEKLNECIPYSTEKLSYYKSTNFSIKDFQNKADLKYFNYSEF 193
Query: 169 ---------DRSRAFSNKSRNIIQGIREIKGWFVNGQV 197
D+ N + IR IKG +++GQV
Sbjct: 194 ISTEIPAEGDKPARKKNIAVETQNEIRSIKGLYMSGQV 231
>ref|XP_001229612.1| hypothetical protein CHGG_03096 [Chaetomium globosum CBS 148.51]
gb|EAQ91161.1| hypothetical protein CHGG_03096 [Chaetomium globosum CBS 148.51]
Length = 887
Score = 39.4 bits (91), Expect = 0.16, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 11/79 (13%)
Query: 97 FNEQNNFVERSTQTSDDNIIRED-NSHWAEMIYQLQNMKQELQYFNRSSGQPSESIDDFV 155
F N +V R Q I+ ++ N W + E Y R + D V
Sbjct: 407 FKALNQYVRRCLQ-EQGYILDDESNVQWNR-------LYDEGNYLLRDKYRS--HTDRIV 456
Query: 156 FQIKMVTDQVELTDRSRAF 174
+IK + DQ + +++AF
Sbjct: 457 DEIKFLADQFDQDPQNKAF 475
>ref|NP_047719.1| LdOrf-82 peptide [Lymantria dispar nucleopolyhedrovirus]
gb|AAC70268.1|AAC70268 LdOrf-82 peptide [Lymantria dispar nucleopolyhedrovirus]
Length = 778
Score = 39.0 bits (90), Expect = 0.20, Method: Composition-based stats.
Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 14/128 (10%)
Query: 64 QRNDFSLFVLLRLRRIIAQLQKRLVMTPVSSLGFNEQNNFVER----------STQTSDD 113
+R S +L LRR L++R + + + +ER S+
Sbjct: 595 RRLQESAAEVLALRRDKEDLERRTAASAAQDVSYGRLQEDIERVKADLSRLTDSSDGVQF 654
Query: 114 NIIREDNSHWAEMIYQLQNMKQELQYFNRSSG----QPSESIDDFVFQIKMVTDQVELTD 169
+I++ +N + +LQ ++ E SG + +ESI+D QIK D+ +
Sbjct: 655 DILKLNNLRDETLRDRLQQLQTENDRLREDSGLEIKRQAESINDEFDQIKRAIDEFKSKQ 714
Query: 170 RSRAFSNK 177
R S K
Sbjct: 715 RRYEKSEK 722
>ref|XP_001671247.1| Hypothetical protein CBG01673 [Caenorhabditis briggsae AF16]
emb|CAP22948.1| Hypothetical protein CBG01673 [Caenorhabditis briggsae]
Length = 4317
Score = 38.7 bits (89), Expect = 0.28, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 54/135 (40%), Gaps = 13/135 (9%)
Query: 65 RNDFSLFVLLRLRRIIAQLQKRLVMTPVSSLGFNEQNNFVERSTQTSDDNIIREDNSHWA 124
R + ++ + + +++RL P S F + + + ++ S + I + +W
Sbjct: 3294 RIEKVAGLISSMEVFVGSMKRRLEAIPYHSDEFIRSKSHLHQLSKLSQSDEIAQKLVNW- 3352
Query: 125 EMIYQLQNMKQELQYFNRSSGQPSE--SID------DFVFQIKMVTDQVELTDRSRAFSN 176
+L + + ++ N + G S SI+ K + D + L D F +
Sbjct: 3353 --SAKLSTLIENMKRINENFGNTSIFKSIEYAIWRSQLNEDSKALLDILNLFD--GFFES 3408
Query: 177 KSRNIIQGIREIKGW 191
+ + I + + E+ W
Sbjct: 3409 EKQQISKNLEEMSLW 3423
>ref|XP_532269.2| PREDICTED: similar to laminin, alpha 4 precursor [Canis familiaris]
Length = 1806
Score = 38.3 bits (88), Expect = 0.29, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 48/134 (35%), Gaps = 15/134 (11%)
Query: 63 QQRNDFSLFVLLR---LRRIIAQLQKRLVMTPVSSLGFNEQNNFVERSTQTSDDNIIRED 119
+R D L R LR + KRL T G Q + E
Sbjct: 677 NRRVD---GALARKSALRNRLNDAIKRLQAT---ERGDAHQRLGQSKLITEEASKTTVEV 730
Query: 120 NSHWAEMIYQLQNMKQELQYF-----NRSSGQPSESIDDFVFQIKMVTDQVELTDRSRAF 174
A M L N Q LQ F N + +++ + + + DQ+ ++ R
Sbjct: 731 QQAAAPMADNLTNWSQNLQSFDSSAYNTAVDSAQDAVRNLTEVVPQLLDQLRTVEQKRPA 790
Query: 175 SNKSRNIIQGIREI 188
SN S +I Q IRE+
Sbjct: 791 SNVSASI-QRIREL 803
>ref|YP_928250.1| GGDEF family protein [Shewanella amazonensis SB2B]
gb|ABM00581.1| GGDEF family protein [Shewanella amazonensis SB2B]
Length = 581
Score = 38.3 bits (88), Expect = 0.36, Method: Composition-based stats.
Identities = 38/172 (22%), Positives = 74/172 (43%), Gaps = 26/172 (15%)
Query: 30 NAIKGLLYNGGSIYAFLYFVIAMFVEPTLQKQYQQRND-FSLFVLLRLRRIIAQ--LQKR 86
+ L Y + + + I + +L + + + D L +R ++Q L ++
Sbjct: 9 RKLTILFY----LISLMTVGIG-IIAVSLSQSLKLQVDAMVANDLAEVRLAMSQVRLAEQ 63
Query: 87 LVMTPVSSLGFNEQNNFVERSTQTSDDNIIREDNSHWAEMIYQLQNMKQELQYFNRSSGQ 146
L T V+ L N V+ T +++RE ++ W QL N Q+L F+ S Q
Sbjct: 64 LQTT-VAKL-----KNVVD---DTERSDLLRELSAQWQ----QLLNGTQKLGSFHHSDDQ 110
Query: 147 PSESIDDFVFQIKMVTDQVELTDRSRAFSNKSR----NIIQGIREIKGWFVN 194
S + + Q +M++ + D + + SR N+IQ + +++ FV
Sbjct: 111 TSALGEQAIMQQQMLS-TLARLDEFSSQALLSRLQVANLIQNLNDMQAGFVR 161
>ref|NP_809570.1| ATP-dependent DNA helicase [Bacteroides thetaiotaomicron VPI-5482]
gb|AAO75764.1| ATP-dependent DNA helicase [Bacteroides thetaiotaomicron VPI-5482]
Length = 788
Score = 37.9 bits (87), Expect = 0.41, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 12/95 (12%)
Query: 105 ERSTQTSDDNIIREDNSHWAEMIYQLQNMKQELQYF---NRSSGQPSESIDDFVFQIKMV 161
+ TS +N+ R++N ++ + + F + G P+ S+ DF+ +I ++
Sbjct: 501 DVCQDTSPENLSRKEN---------IEELVNGMNDFCALRQEEGNPNISLTDFLSEIALL 551
Query: 162 TDQVELTDRSRAFSNKSRNIIQGIREIKGWFVNGQ 196
TDQ E K FV G
Sbjct: 552 TDQDSDKADDGEKITLMTVHSAKGLEFKNVFVVGL 586
>ref|ZP_01959253.1| hypothetical protein BACCAC_00855 [Bacteroides caccae ATCC 43185]
gb|EDM22468.1| hypothetical protein BACCAC_00855 [Bacteroides caccae ATCC 43185]
Length = 817
Score = 37.9 bits (87), Expect = 0.41, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 16/97 (16%)
Query: 105 ERSTQTSDDNIIREDNSHWAEMIYQLQNMKQELQYF---NRSSGQPSESIDDFVFQIKMV 161
+ TS +N+ R++N ++ + + F + G P+ S+ DF+ +I ++
Sbjct: 528 DVCQDTSPENLSRKEN---------IEELVNGMNDFCALRQEEGNPNISLTDFLSEIALL 578
Query: 162 TDQVELTDRSRAFSNKSRNIIQGIR--EIKGWFVNGQ 196
TDQ +D++ + + + E K FV G
Sbjct: 579 TDQ--DSDKADDGEKITLMTVHSAKGLEFKNVFVVGL 613
>ref|YP_001127972.1| translation initiation factor IF-2 [Streptococcus pyogenes str.
Manfredo]
sp|A2RD01|IF2_STRPG Translation initiation factor IF-2
emb|CAM29724.1| translation initiation factor IF-2 [Streptococcus pyogenes str.
Manfredo]
Length = 953
Score = 37.5 bits (86), Expect = 0.57, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 75 RLRRIIAQLQKRLV----MTPVSSLGFNEQ 100
R+R ++ L +R+ TPVS G NE
Sbjct: 670 RVRAMVNDLGRRVKSAEPSTPVSITGLNET 699
>ref|NP_665299.1| translation initiation factor IF-2 [Streptococcus pyogenes MGAS315]
gb|AAM80102.1| putative initiation factor 2 [Streptococcus pyogenes MGAS315]
Length = 934
Score = 37.5 bits (86), Expect = 0.58, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 75 RLRRIIAQLQKRLV----MTPVSSLGFNEQ 100
R+R ++ L +R+ TPVS G NE
Sbjct: 651 RVRAMVNDLGRRVKSAEPSTPVSITGLNET 680
>ref|YP_603016.1| translation initiation factor IF-2 [Streptococcus pyogenes
MGAS10750]
sp|Q1J5B4|IF2_STRPF Translation initiation factor IF-2
gb|ABF38472.1| Bacterial Protein Translation Initiation Factor 2 (IF-2)
[Streptococcus pyogenes MGAS10750]
Length = 953
Score = 37.5 bits (86), Expect = 0.59, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 75 RLRRIIAQLQKRLV----MTPVSSLGFNEQ 100
R+R ++ L +R+ TPVS G NE
Sbjct: 670 RVRAMVNDLGRRVKSAEPSTPVSITGLNET 699
>ref|NP_801634.1| translation initiation factor IF-2 [Streptococcus pyogenes SSI-1]
sp|Q8K644|IF2_STRP3 Translation initiation factor IF-2
dbj|BAC63467.1| putative initiation factor 2 [Streptococcus pyogenes SSI-1]
Length = 953
Score = 37.5 bits (86), Expect = 0.60, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 75 RLRRIIAQLQKRLV----MTPVSSLGFNEQ 100
R+R ++ L +R+ TPVS G NE
Sbjct: 670 RVRAMVNDLGRRVKSAEPSTPVSITGLNET 699
>ref|NP_269745.1| translation initiation factor IF-2 [Streptococcus pyogenes M1 GAS]
ref|YP_060775.1| translation initiation factor IF-2 [Streptococcus pyogenes
MGAS10394]
ref|YP_280917.1| translation initiation factor IF-2 [Streptococcus pyogenes
MGAS6180]
ref|YP_282772.1| translation initiation factor IF-2 [Streptococcus pyogenes
MGAS5005]
ref|YP_597142.1| translation initiation factor IF-2 [Streptococcus pyogenes
MGAS9429]
ref|YP_599139.1| translation initiation factor IF-2 [Streptococcus pyogenes
MGAS10270]
ref|YP_601031.1| translation initiation factor IF-2 [Streptococcus pyogenes
MGAS2096]
sp|Q1JAC1|IF2_STRPB Translation initiation factor IF-2
sp|Q1JKH1|IF2_STRPC Translation initiation factor IF-2
sp|Q1JFG4|IF2_STRPD Translation initiation factor IF-2
sp|Q99YG1|IF2_STRP1 Translation initiation factor IF-2
sp|Q5XAH1|IF2_STRP6 Translation initiation factor IF-2
sp|Q48RU8|IF2_STRPM Translation initiation factor IF-2
gb|AAK34466.1| putative initiation factor 2 [Streptococcus pyogenes M1 GAS]
gb|AAT87592.1| Translation Initiation Factor 2 [Streptococcus pyogenes MGAS10394]
gb|AAX72562.1| bacterial protein translation initiation factor 2 (IF-2)
[Streptococcus pyogenes MGAS6180]
gb|AAZ52027.1| bacterial protein translation initiation factor 2 [Streptococcus
pyogenes MGAS5005]
gb|ABF32598.1| bacterial protein translation initiation factor 2 (IF-2)
[Streptococcus pyogenes MGAS9429]
gb|ABF34595.1| Bacterial Protein Translation Initiation Factor 2 (IF-2)
[Streptococcus pyogenes MGAS10270]
gb|ABF36487.1| Bacterial Protein Translation Initiation Factor 2 (IF-2)
[Streptococcus pyogenes MGAS2096]
Length = 953
Score = 37.5 bits (86), Expect = 0.60, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 75 RLRRIIAQLQKRLV----MTPVSSLGFNEQ 100
R+R ++ L +R+ TPVS G NE
Sbjct: 670 RVRAMVNDLGRRVKSAEPSTPVSITGLNET 699
>ref|NP_607759.1| translation initiation factor IF-2 [Streptococcus pyogenes
MGAS8232]
sp|Q8NZU7|IF2_STRP8 Translation initiation factor IF-2
gb|AAL98258.1| putative initiation factor 2 [Streptococcus pyogenes MGAS8232]
Length = 953
Score = 37.5 bits (86), Expect = 0.62, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 75 RLRRIIAQLQKRLV----MTPVSSLGFNEQ 100
R+R ++ L +R+ TPVS G NE
Sbjct: 670 RVRAMVNDLGRRVKSAEPSTPVSITGLNET 699
>ref|ZP_00365886.1| COG0532: Translation initiation factor 2 (IF-2; GTPase)
[Streptococcus pyogenes M49 591]
Length = 953
Score = 37.5 bits (86), Expect = 0.63, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 75 RLRRIIAQLQKRLV----MTPVSSLGFNEQ 100
R+R ++ L +R+ TPVS G NE
Sbjct: 670 RVRAMVNDLGRRVKSAEPSTPVSITGLNET 699
>ref|YP_001199212.1| translation initiation factor IF-2 [Streptococcus suis 05ZYH33]
ref|YP_001201406.1| translation initiation factor IF-2 [Streptococcus suis 98HAH33]
sp|A4W3R7|IF2_STRS2 Translation initiation factor IF-2
sp|A4VXH3|IF2_STRSY Translation initiation factor IF-2
gb|ABP90812.1| Translation initiation factor 2 (IF-2; GTPase) [Streptococcus suis
05ZYH33]
gb|ABP93006.1| Translation initiation factor 2 (IF-2; GTPase) [Streptococcus suis
98HAH33]
Length = 940
Score = 37.1 bits (85), Expect = 0.77, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 75 RLRRIIAQLQKRLVM----TPVSSLGFNEQ 100
R+R + L +R+ TPVS G NE
Sbjct: 658 RVRAMTNDLGRRVKTAGPSTPVSITGLNET 687
>dbj|BAD61436.1| beta3-glucuronyltransferase -like [Oryza sativa Japonica Group]
Length = 549
Score = 37.1 bits (85), Expect = 0.78, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Query: 108 TQTSDDNIIREDNSHWAEMIYQLQNMK-----QELQYFNRSSGQPSESIDDFVFQIKMVT 162
T+T+ D+ + W + Q N SSG P ++ F+ M+
Sbjct: 231 TETTWDSSSNTTQTTWDSSSNKTQTTTLAALDTNASKQNSSSGPPEINMHAVGFKSSMLW 290
Query: 163 DQVELTDRSRAFSNKSRNIIQGIREI 188
D T R + + ++++IQ +R++
Sbjct: 291 DSERFTRRDNSSTGINQDLIQAVRQM 316
>ref|ZP_01254880.1| spermidine synthase [Psychroflexus torquis ATCC 700755]
gb|EAS70294.1| spermidine synthase [Psychroflexus torquis ATCC 700755]
Length = 518
Score = 36.7 bits (84), Expect = 0.84, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 13/123 (10%)
Query: 32 IKGLLYNGGSIYAFLYFVIAMFVEPTLQKQYQQR--NDFSLFVLLRLRRIIAQLQKRLVM 89
I GL Y + + F++A+ V + + +R +L+ +I +
Sbjct: 162 IIGLAY-TPFVLGIINFLVALIVFYRFKDKINKRSTVRLQAILLIVFAILITGI-----S 215
Query: 90 TPVSSLGFNEQNNFVER---STQTSDDNI--IREDNSHWAEMIYQLQNMKQELQYFNRSS 144
+ + EQ + ++ S QT I + HW + LQ + + ++
Sbjct: 216 FTEPIIQWGEQKKYKDKVVYSEQTEYQKIVLTEWKDEHWLYLNGNLQFCSIDEKMYHEPL 275
Query: 145 GQP 147
P
Sbjct: 276 VHP 278
>gb|AAC52982.1| laminin alpha 4 chain [Mus musculus]
Length = 1815
Score = 36.7 bits (84), Expect = 0.85, Method: Composition-based stats.
Identities = 31/131 (23%), Positives = 47/131 (35%), Gaps = 20/131 (15%)
Query: 70 LFVLLRLRRIIAQLQKRLVMTPVSSLGFNEQNNFVERSTQTSDDNIIREDNSHW------ 123
L R R + +L + + G Q R Q II E N
Sbjct: 692 GGALARKRALRGRLHDAVKQLQAAERGDAHQ-----RLGQ--SRLIIEEANKTTMAVQQV 744
Query: 124 -AEMIYQLQNMKQELQYF-----NRSSGQPSESIDDFVFQIKMVTDQVELTDRSRAFSNK 177
M L N Q LQ F N + +++ + + + DQ+ ++ R SN
Sbjct: 745 TTPMANNLSNWSQNLQTFDSSAYNTAVDSARDAVRNLTEVVPQLLDQLRTVEQKRPASNI 804
Query: 178 SRNIIQGIREI 188
S +I Q IRE+
Sbjct: 805 SASI-QRIREL 814
>ref|YP_001449862.1| Translation initiation factor IF-2 [Streptococcus gordonii str.
Challis substr. CH1]
sp|A8AVQ2|IF2_STRGC Translation initiation factor IF-2
gb|ABV09252.1| Translation initiation factor IF-2 [Streptococcus gordonii str.
Challis substr. CH1]
Length = 953
Score = 36.7 bits (84), Expect = 0.87, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 75 RLRRIIAQLQKRLV----MTPVSSLGFNEQ 100
R+R + L +R+ TPVS G NE
Sbjct: 671 RVRAMTNDLGRRVKVAGPSTPVSITGLNET 700
>ref|YP_001035823.1| translation initiation factor IF-2 [Streptococcus sanguinis SK36]
sp|A3CQ18|IF2_STRSV Translation initiation factor IF-2
gb|ABN45273.1| Translation initiation factor IF-2, putative [Streptococcus
sanguinis SK36]
Length = 930
Score = 36.7 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 75 RLRRIIAQLQKRLV----MTPVSSLGFNEQ 100
R+R + L +R+ TPVS G NE
Sbjct: 648 RVRAMTNDLGRRVKVAGPSTPVSITGLNET 677
>ref|ZP_02065390.1| hypothetical protein BACOVA_02365 [Bacteroides ovatus ATCC 8483]
gb|EDO11871.1| hypothetical protein BACOVA_02365 [Bacteroides ovatus ATCC 8483]
Length = 792
Score = 36.7 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 16/97 (16%)
Query: 105 ERSTQTSDDNIIREDNSHWAEMIYQLQNMKQELQYF---NRSSGQPSESIDDFVFQIKMV 161
+ TS +N+ R++N ++ + + F + G P+ S+ DF+ +I ++
Sbjct: 503 DVCQDTSPENLSRKEN---------IEELVNGMNDFCALRQEEGNPNVSLTDFLSEIALL 553
Query: 162 TDQVELTDRSRAFSNKSRNIIQGIR--EIKGWFVNGQ 196
TDQ +D++ + + + E K FV G
Sbjct: 554 TDQ--DSDKADDGEKITLMTVHSAKGLEFKNVFVVGL 588
>gb|EAY72617.1| hypothetical protein OsI_000464 [Oryza sativa (indica
cultivar-group)]
Length = 525
Score = 36.7 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Query: 108 TQTSDDNIIREDNSHWAEMIYQLQNMK-----QELQYFNRSSGQPSESIDDFVFQIKMVT 162
T+T+ D+ + W + Q N SSG P ++ F+ M+
Sbjct: 231 TETTWDSGSNTTQTTWDSSSNKTQTTTLAALDTNASKQNSSSGPPEINMHAVGFKSSMLW 290
Query: 163 DQVELTDRSRAFSNKSRNIIQGIREI 188
D T R + + ++++IQ +R++
Sbjct: 291 DSERFTRRDNSSTGINQDLIQAVRQM 316
>gb|EAZ10617.1| hypothetical protein OsJ_000442 [Oryza sativa (japonica
cultivar-group)]
Length = 421
Score = 36.3 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
Query: 108 TQTSDDNIIREDNSHWAEMIYQLQNMK-----QELQYFNRSSGQPSESIDDFVFQIKMVT 162
T+T+ D+ + W + Q N SSG P ++ F+ M+
Sbjct: 103 TETTWDSSSNTTQTTWDSSSNKTQTTTLAALDTNASKQNSSSGPPEINMHAVGFKSSMLW 162
Query: 163 DQVELTDRSRAFSNKSRNIIQGIREI 188
D T R + + ++++IQ +R++
Sbjct: 163 DSERFTRRDNSSTGINQDLIQAVRQM 188
>ref|ZP_00590833.1| PAS [Pelodictyon phaeoclathratiforme BU-1]
gb|EAN23944.1| PAS [Pelodictyon phaeoclathratiforme BU-1]
Length = 1138
Score = 36.3 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 8/127 (6%)
Query: 59 QKQYQQRNDFSLFVLLRLRRIIAQLQKRLVMTPVSSLGFNEQNNFVERSTQTSDDNIIRE 118
QK +Q + +L +R + Q+ L T E + E T+++ +
Sbjct: 676 QKLLEQELSQARDEILSIREEMQTSQEELKSTN------EEMQSANEELQSTNEELTTSK 729
Query: 119 DNSHWAEMIYQLQNMKQELQYFNRSSGQPSESIDDFVFQIKMVTDQVELTDRSRAFSNKS 178
+ M +LQ + ELQ Q + + + + + T ++ R F+ ++
Sbjct: 730 EEM--QSMNEELQTVNHELQSKVSDLSQANNDMKNLLNSTDIATLFLDDALNIRRFTTRT 787
Query: 179 RNIIQGI 185
II+ I
Sbjct: 788 AAIIKLI 794
>ref|ZP_00532148.1| PAS [Chlorobium phaeobacteroides BS1]
gb|EAM63506.1| PAS [Chlorobium phaeobacteroides BS1]
Length = 665
Score = 36.0 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 23/113 (20%), Positives = 45/113 (39%), Gaps = 8/113 (7%)
Query: 73 LLRLRRIIAQLQKRLVMTPVSSLGFNEQNNFVERSTQTSDDNIIREDNSHWAEMIYQLQN 132
+L +R + Q+ L T E + E T+++ ++ M +LQ
Sbjct: 215 ILSIREQMQTSQEELKSTN------EEMQSANEELQSTNEELTTSKEEM--QSMNEELQT 266
Query: 133 MKQELQYFNRSSGQPSESIDDFVFQIKMVTDQVELTDRSRAFSNKSRNIIQGI 185
+ ELQ R Q + + + + + T ++ R F+ K+ II+ I
Sbjct: 267 VNHELQSKVRDLSQANNDMKNLLNSTDIATLFLDDELNIRRFTTKTATIIKLI 319
>gb|AAA67449.1| P120
Length = 1078
Score = 36.0 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 16/116 (13%), Positives = 41/116 (35%), Gaps = 8/116 (6%)
Query: 80 IAQLQKRLVMTPVSSLGFNEQNNFVERSTQ---TSDDNIIREDNSHWAEMIYQLQNMKQE 136
I L K+L T +S E+ V++ + + + + + ++
Sbjct: 60 INDLMKQLQETKNNSKTIEEKEKLVKKLQEDLNKIQQERTAKYQAELNAANKAIVEIPKK 119
Query: 137 LQYFNRSSGQPSESIDDFVFQIKMVTDQVELTDRSRAFS---NKSRNIIQGIREIK 189
+ N + + + + K+++ + + + + KS I I+E K
Sbjct: 120 YEELNEKNDDLKDQLSSL--ETKLLSSESKFKNSGKKIESYLKKSTEIENNIKESK 173
>gb|EDN74125.1| hypothetical protein MHA_1194 [Mannheimia haemolytica PHL213]
Length = 945
Score = 36.0 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 20/108 (18%), Positives = 43/108 (39%), Gaps = 14/108 (12%)
Query: 103 FVERSTQTSDDNIIREDNSHWAEMIYQLQNMKQELQYFNRS----------SGQPSESID 152
+V++S ++++ II + N+ + + L +LQ + + PS + +
Sbjct: 214 YVDKSNDSNENLIIEQLNNACSRINGALTTAGLQLQRLDGEQIRQWLLRWFNPNPSINFE 273
Query: 153 DFV--FQIKMVTDQVELTDRSRAFSNKSRNI--IQGIREIKGWFVNGQ 196
+ Q D AF++ S ++ Q E W+ +GQ
Sbjct: 274 GLSNNDCYHLFGKQTSNDDLPLAFTDFSEDLFYSQPRNEGSYWYFDGQ 321
>ref|NP_692046.1| methyl-accepting chemotaxis protein [Oceanobacillus iheyensis
HTE831]
dbj|BAC13081.1| methyl-accepting chemotaxis protein [Oceanobacillus iheyensis
HTE831]
Length = 488
Score = 36.0 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 36/171 (21%), Positives = 64/171 (37%), Gaps = 34/171 (19%)
Query: 31 AIKGLLYNGGSIYAFLYFVIAMFVEPTLQKQYQQRNDFSLFVLLRLRRIIAQLQKRLVMT 90
AI + Y I F+ IA + +K ++ N S + Q +LV
Sbjct: 141 AITIVFYALVFIVLFIQVKIAQMLLINAEKSLEESNKLSHDQME---------QSKLVKN 191
Query: 91 PVSSLGFNEQNNFVERSTQTSDDNIIREDNSHWA-----EMIYQLQNMKQELQYFNRSSG 145
VS Q + + E SHW EM + M + Q ++++
Sbjct: 192 GVS---------------QVHQEMQVIEKESHWNFQSMKEMRDAFKEMNEATQVQSQAAT 236
Query: 146 QPSESIDDFVFQIKMVTDQV-ELTDRSRAFSNKSRNIIQGIRE----IKGW 191
SE+ + QIK++ D +L + + S++ + I E +KG+
Sbjct: 237 TISETTELTNQQIKLMIDLFTKLKNDGQNLEALSKSGSESISELNKMMKGF 287
>ref|ZP_01166343.1| PAS protein [Oceanospirillum sp. MED92]
gb|EAR61596.1| PAS protein [Oceanospirillum sp. MED92]
Length = 961
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 17/111 (15%), Positives = 40/111 (36%), Gaps = 16/111 (14%)
Query: 22 IEGTNPTVNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQKQYQQRNDFSLFVLLRLRRIIA 81
+ T+ LL GSI+A +Y L K+ R + + ++ I+
Sbjct: 2 YRRSPITIRLFLMLLALIGSIFAAIYIFTV-----PLIKENVFRLELNGN--RQVLNIVY 54
Query: 82 QLQKRLVMTPVSSLGFNEQNNFVERSTQTSDDNIIREDNSHWAEMIYQLQN 132
L R+ + ++V+R+ ++ + + + + L+
Sbjct: 55 DLANRMYTS---------TESYVDRTLKSHEQRLSSVLDMTENHIEVALRE 96
>ref|YP_001785018.1| conserved hypothetical protein [Haemophilus somnus 2336]
gb|ACA31471.1| conserved hypothetical protein [Haemophilus somnus 2336]
Length = 945
Score = 35.6 bits (81), Expect = 1.8, Method: Composition-based stats.
Identities = 10/63 (15%), Positives = 26/63 (41%), Gaps = 10/63 (15%)
Query: 103 FVERSTQTSDDNIIREDNSHWAEMIYQLQNMKQELQYFNRS----------SGQPSESID 152
+V++S T+++ I+ + N+ + + L +LQ + + PS + +
Sbjct: 213 YVDKSNDTNENLIVEQLNNACSRINGALTTAGLQLQRLDGEQFRQWLLRWFNPNPSINFE 272
Query: 153 DFV 155
Sbjct: 273 GLS 275
>ref|ZP_02863218.1| chromosome partition protein smc [Clostridium botulinum C str.
Eklund]
gb|EDS76262.1| chromosome partition protein smc [Clostridium botulinum C str.
Eklund]
Length = 377
Score = 35.6 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 17/97 (17%), Positives = 40/97 (41%), Gaps = 13/97 (13%)
Query: 94 SLGFNE-QNNFVERSTQTSDDNIIREDNSHWAEMIYQLQNMKQELQYFNRSSGQPSESID 152
+ NE + + ++T +II E+N + N+K+ + +N + + +
Sbjct: 280 EIENNEKTKKYYD--SKTKKQDIINENNLLEERIS----NLKKSIDKYNENLYSLEKRLK 333
Query: 153 DFVFQIKMVTDQVELTDRSRAFSNKSRNIIQGIREIK 189
K+V ++++ R F K + + I E +
Sbjct: 334 ------KLVNNKLDEEKRLNNFIEKQQLLENNIIEFQ 364
>ref|YP_001039336.1| histidine kinase [Clostridium thermocellum ATCC 27405]
gb|ABN54143.1| histidine kinase [Clostridium thermocellum ATCC 27405]
Length = 616
Score = 35.6 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 23/145 (15%), Positives = 61/145 (42%), Gaps = 12/145 (8%)
Query: 29 VNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQKQYQQRNDFSLFVLLRLRRI--IAQLQKR 86
+ + + +LY G I FVI++ + ++R + +++ R+ + QL
Sbjct: 321 IESTQDILYEIGLICVIAGFVISLLITRLYNAHLEKRYERKHSIIMERERLASLGQLMGG 380
Query: 87 LVMT---PVSSL--GFNEQNNFVERSTQTSDDNIIREDNSHWAEMIYQLQNMKQELQYFN 141
+ + P+ S+ G +E N+ V+ ++ ++ + ++ H E+ +++ +++
Sbjct: 381 IAQSFKAPIMSISDGLDELNSLVDEYEKSIENENVSDETRH--EIASRMRECLDKIKPH- 437
Query: 142 RSSGQPSESIDDFVFQIKMVTDQVE 166
S+ I Q D +
Sbjct: 438 --CSYISDEISAVKGQAVNFNDSTD 460
>ref|YP_175724.1| translation initiation factor IF-2 [Bacillus clausii KSM-K16]
sp|Q5WFU2|IF2_BACSK Translation initiation factor IF-2
dbj|BAD64763.1| translation initiation factor IF-2 [Bacillus clausii KSM-K16]
Length = 761
Score = 35.6 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 75 RLRRIIAQLQKRLVM----TPVSSLGFNEQNNFVERSTQTSDDNIIRE 118
R+R ++ + +R+ PV G NE +R D+ R+
Sbjct: 478 RVRALVNDVGRRVKTAGPSAPVEITGLNEVPQAGDRFQAFEDEKKARQ 525
>ref|ZP_00233513.1| translation initiation factor IF-2 [Listeria monocytogenes str.
1/2a F6854]
gb|EAL06586.1| translation initiation factor IF-2 [Listeria monocytogenes str.
1/2a F6854]
Length = 774
Score = 35.6 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 6/74 (8%)
Query: 75 RLRRIIAQLQKRLV----MTPVSSLGFNEQNNFVERSTQTSDDNIIREDNSHWAEMIYQL 130
R+R ++ L +R+ TPV G N+ +R D+ R N L
Sbjct: 491 RVRAMVNDLGRRVKKVGPSTPVEITGLNDVPQAGDRFVVFEDEKTAR--NIGETRASRAL 548
Query: 131 QNMKQELQYFNRSS 144
+ + +
Sbjct: 549 VAQRSATNRVSLDN 562
>ref|ZP_00231841.1| translation initiation factor IF-2 [Listeria monocytogenes str. 4b
H7858]
gb|EAL08313.1| translation initiation factor IF-2 [Listeria monocytogenes str. 4b
H7858]
Length = 782
Score = 35.6 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 6/74 (8%)
Query: 75 RLRRIIAQLQKRLV----MTPVSSLGFNEQNNFVERSTQTSDDNIIREDNSHWAEMIYQL 130
R+R ++ L +R+ TPV G N+ +R D+ R N L
Sbjct: 499 RVRAMVNDLGRRVKKVGPSTPVEITGLNDVPQAGDRFVVFEDEKTAR--NIGETRASRAL 556
Query: 131 QNMKQELQYFNRSS 144
+ + +
Sbjct: 557 VAQRSATNRVSLDN 570
>ref|NP_470698.1| translation initiation factor IF-2 [Listeria innocua Clip11262]
sp|Q92C29|IF2_LISIN Translation initiation factor IF-2
emb|CAC96593.1| infB [Listeria innocua]
Length = 782
Score = 35.6 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 6/74 (8%)
Query: 75 RLRRIIAQLQKRLV----MTPVSSLGFNEQNNFVERSTQTSDDNIIREDNSHWAEMIYQL 130
R+R ++ L +R+ TPV G N+ +R D+ R N L
Sbjct: 499 RVRAMVNDLGRRVKKVGPSTPVEITGLNDVPQAGDRFVVFEDEKTAR--NIGETRASRAL 556
Query: 131 QNMKQELQYFNRSS 144
+ + +
Sbjct: 557 VAQRSATNRVSLDN 570
>ref|NP_464850.1| translation initiation factor IF-2 [Listeria monocytogenes EGD-e]
sp|Q8Y7F6|IF2_LISMO Translation initiation factor IF-2
emb|CAC99403.1| infB [Listeria monocytogenes]
Length = 779
Score = 35.6 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 6/74 (8%)
Query: 75 RLRRIIAQLQKRLV----MTPVSSLGFNEQNNFVERSTQTSDDNIIREDNSHWAEMIYQL 130
R+R ++ L +R+ TPV G N+ +R D+ R N L
Sbjct: 496 RVRAMVNDLGRRVKKVGPSTPVEITGLNDVPQAGDRFVVFEDEKTAR--NIGETRASRAL 553
Query: 131 QNMKQELQYFNRSS 144
+ + +
Sbjct: 554 VAQRSATNRVSLDN 567
>ref|YP_013940.1| translation initiation factor IF-2 [Listeria monocytogenes str. 4b
F2365]
ref|ZP_01943795.1| translation initiation factor IF-2 [Listeria monocytogenes HPB2262]
ref|ZP_02320175.1| translation initiation factor IF-2 [Listeria monocytogenes FSL
J2-064]
sp|Q71ZZ7|IF2_LISMF Translation initiation factor IF-2
gb|AAT04117.1| translation initiation factor IF-2 [Listeria monocytogenes str. 4b
F2365]
gb|EBA37147.1| translation initiation factor IF-2 [Listeria monocytogenes HPB2262]
Length = 782
Score = 35.6 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 6/74 (8%)
Query: 75 RLRRIIAQLQKRLV----MTPVSSLGFNEQNNFVERSTQTSDDNIIREDNSHWAEMIYQL 130
R+R ++ L +R+ TPV G N+ +R D+ R N L
Sbjct: 499 RVRAMVNDLGRRVKKVGPSTPVEITGLNDVPQAGDRFVVFEDEKTAR--NIGETRASRAL 556
Query: 131 QNMKQELQYFNRSS 144
+ + +
Sbjct: 557 VAQRSATNRVSLDN 570
>ref|ZP_01932614.1| translation initiation factor IF-2 [Listeria monocytogenes F6900]
ref|ZP_01934504.1| translation initiation factor IF-2 [Listeria monocytogenes J0161]
ref|ZP_01938089.1| translation initiation factor IF-2 [Listeria monocytogenes J2818]
gb|EBA21060.1| translation initiation factor IF-2 [Listeria monocytogenes J0161]
gb|EBA26055.1| translation initiation factor IF-2 [Listeria monocytogenes J2818]
gb|EBA34578.1| translation initiation factor IF-2 [Listeria monocytogenes F6900]
Length = 777
Score = 35.6 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 6/74 (8%)
Query: 75 RLRRIIAQLQKRLV----MTPVSSLGFNEQNNFVERSTQTSDDNIIREDNSHWAEMIYQL 130
R+R ++ L +R+ TPV G N+ +R D+ R N L
Sbjct: 494 RVRAMVNDLGRRVKKVGPSTPVEITGLNDVPQAGDRFVVFEDEKTAR--NIGETRASRAL 551
Query: 131 QNMKQELQYFNRSS 144
+ + +
Sbjct: 552 VAQRSATNRVSLDN 565
Searching..................................................done
Results from round 3
Score E
Sequences producing significant alignments: (bits) Value
Sequences used in model and found again:
gb|EDN62608.1| peroxin [Saccharomyces cerevisiae YJM789] 312 1e-83
ref|NP_014185.1| Peroxisomal membrane peroxin and subunit o... 312 1e-83
ref|XP_001645849.1| hypothetical protein Kpol_1054p38 [Vand... 277 3e-73
ref|XP_453914.1| unnamed protein product [Kluyveromyces lac... 259 8e-68
ref|NP_982771.1| ABL176Wp [Ashbya gossypii ATCC 10895] >gi|... 253 4e-66
ref|XP_448437.1| unnamed protein product [Candida glabrata]... 244 2e-63
gb|ABC70471.1| peroxin 17 [Pichia angusta] 185 2e-45
Sequences not found previously or not previously below threshold:
gb|AAF19606.1| Pex17p [Pichia pastoris] 72 2e-11
ref|XP_001384161.2| hypothetical protein PICST_44738 [Pichi... 48 4e-04
ref|XP_001526034.1| hypothetical protein LELG_02592 [Lodder... 44 0.005
ref|XP_458097.1| hypothetical protein DEHA0C10516g [Debaryo... 44 0.007
ref|ZP_01118042.1| spermidine synthase [Polaribacter irgens... 43 0.009
ref|XP_001484370.1| hypothetical protein PGUG_03751 [Pichia... 40 0.13
ref|XP_001399309.1| hypothetical protein An02g01680 [Asperg... 39 0.13
ref|XP_532269.2| PREDICTED: similar to laminin, alpha 4 pre... 39 0.18
ref|YP_001127972.1| translation initiation factor IF-2 [Str... 39 0.23
ref|NP_665299.1| translation initiation factor IF-2 [Strept... 39 0.24
ref|YP_603016.1| translation initiation factor IF-2 [Strept... 39 0.24
ref|NP_801634.1| translation initiation factor IF-2 [Strept... 39 0.25
ref|NP_269745.1| translation initiation factor IF-2 [Strept... 39 0.25
ref|NP_607759.1| translation initiation factor IF-2 [Strept... 39 0.25
ref|ZP_00365886.1| COG0532: Translation initiation factor 2... 39 0.25
ref|YP_001199212.1| translation initiation factor IF-2 [Str... 39 0.26
ref|ZP_01254880.1| spermidine synthase [Psychroflexus torqu... 38 0.32
ref|YP_001449862.1| Translation initiation factor IF-2 [Str... 38 0.32
ref|YP_001035823.1| translation initiation factor IF-2 [Str... 38 0.39
ref|XP_714449.1| peroxisomal membrane protein Pex17 fragmen... 38 0.46
ref|YP_001894491.1| capsular exopolysaccharide family [Burk... 37 0.64
gb|EDU48260.1| conserved hypothetical protein [Pyrenophora ... 37 0.68
gb|AAC52982.1| laminin alpha 4 chain [Mus musculus] 37 0.72
ref|ZP_00780296.1| Translation initiation factor IF-2 [Stre... 37 0.82
ref|XP_001400155.1| hypothetical protein An02g10270 [Asperg... 37 0.83
ref|ZP_01408044.1| hypothetical protein SpneT_02001516 [Str... 37 0.85
ref|ZP_00790142.1| initiation factor IF2 [Streptococcus aga... 37 0.85
ref|NP_345072.1| translation initiation factor IF-2 [Strept... 37 0.88
ref|ZP_01822057.1| translation initiation factor IF-2 [Stre... 37 0.89
ref|ZP_01821328.1| translation initiation factor IF-2 [Stre... 37 0.90
ref|YP_002737777.1| translation initiation factor IF-2 [Str... 37 0.90
ref|ZP_01829405.1| translation initiation factor IF-2 [Stre... 37 0.91
ref|ZP_01817253.1| translation initiation factor IF-2 [Stre... 37 0.91
ref|NP_358075.1| translation initiation factor IF-2 [Strept... 37 0.91
ref|YP_001694043.1| translation initiation factor IF-2 [Str... 37 0.93
ref|ZP_01835566.1| translation initiation factor IF-2 [Stre... 37 0.94
ref|ZP_02710175.1| translation initiation factor IF-2 [Stre... 37 0.95
ref|ZP_01827169.1| translation initiation factor IF-2 [Stre... 37 0.97
ref|NP_720869.1| translation initiation factor IF-2 [Strept... 37 1.0
ref|YP_175724.1| translation initiation factor IF-2 [Bacill... 37 1.0
ref|YP_822822.1| integral membrane sensor signal transducti... 37 1.1
ref|XP_001437644.1| hypothetical protein GSPATT00038349001 ... 36 1.2
ref|XP_714498.1| peroxisomal membrane protein Pex17 fragmen... 36 1.2
ref|ZP_00785503.1| translation initiation factor IF-2 [Stre... 36 1.3
ref|ZP_00788009.1| translation initiation factor IF-2 [Stre... 36 1.3
ref|NP_734885.1| translation initiation factor IF-2 [Strept... 36 1.3
ref|ZP_00783418.1| translation initiation factor IF-2 [Stre... 36 1.3
gb|AAX86820.1| translation initiation factor B [Streptococc... 36 1.3
emb|CAC00485.1| initiation Factor 2 [Streptococcus agalacti... 36 1.3
emb|CAC00493.1| initiation factor 2 [Streptococcus agalacti... 36 1.3
emb|CAC00497.1| initiation factor 2 [Streptococcus agalactiae] 36 1.3
ref|NP_687415.1| translation initiation factor IF-2 [Strept... 36 1.4
ref|YP_001421241.1| InfB [Bacillus amyloliquefaciens FZB42]... 36 1.8
ref|XP_001260755.1| peroxisomal membrane anchor protein, pu... 36 2.1
ref|ZP_02287092.1| translation initiation factor IF-2 [List... 36 2.2
ref|ZP_00875946.1| Initiation factor 2:Small GTP-binding pr... 36 2.2
ref|XP_001390940.1| hypothetical protein An06g01130 [Asperg... 36 2.2
ref|NP_809570.1| ATP-dependent DNA helicase [Bacteroides th... 36 2.3
ref|ZP_02309122.1| translation initiation factor IF-2 [List... 36 2.3
ref|ZP_02919355.1| hypothetical protein STRINF_00190 [Strep... 36 2.4
ref|YP_001486808.1| initiation factor IF2 [Bacillus pumilus... 35 2.6
ref|ZP_01959253.1| hypothetical protein BACCAC_00855 [Bacte... 35 2.8
ref|ZP_00233513.1| translation initiation factor IF-2 [List... 35 2.8
ref|ZP_01929933.1| translation initiation factor IF-2 [List... 35 2.8
ref|XP_001796917.1| hypothetical protein SNOG_06549 [Phaeos... 35 2.8
ref|ZP_01932614.1| translation initiation factor IF-2 [List... 35 2.9
ref|ZP_02687811.1| translation initiation factor IF-2 [List... 35 2.9
ref|ZP_00231841.1| translation initiation factor IF-2 [List... 35 3.0
ref|NP_470698.1| translation initiation factor IF-2 [Lister... 35 3.0
ref|YP_013940.1| translation initiation factor IF-2 [Lister... 35 3.1
ref|NP_464850.1| translation initiation factor IF-2 [Lister... 35 3.1
ref|ZP_01927223.1| translation initiation factor IF-2 [List... 35 3.2
dbj|BAD61436.1| beta3-glucuronyltransferase -like [Oryza sa... 35 3.2
ref|YP_849537.1| translation initiation factor IF-2 [Lister... 35 3.5
ref|ZP_04014739.1| minor tail protein [Lactobacillus planta... 35 3.5
ref|XP_500094.1| hypothetical protein [Yarrowia lipolytica]... 35 3.8
ref|XP_663862.1| hypothetical protein AN6258.2 [Aspergillus... 35 4.2
ref|XP_608123.3| PREDICTED: similar to laminin alpha 4 [Bos... 35 4.2
ref|ZP_01724733.1| translation initiation factor IF-2 [Baci... 34 4.3
ref|YP_001697326.1| Translation initiation factor IF-2 [Lys... 34 4.3
gb|EAZ10617.1| hypothetical protein OsJ_000442 [Oryza sativ... 34 4.3
gb|EAY72617.1| hypothetical protein OsI_000464 [Oryza sativ... 34 4.5
ref|YP_001567322.1| translation initiation factor IF-2 [Pet... 34 4.8
ref|ZP_03907811.1| hypothetical protein DacetDRAFT_29230 [D... 34 5.0
ref|XP_001229612.1| hypothetical protein CHGG_03096 [Chaeto... 34 5.2
ref|NP_389545.1| translation initiation factor IF-2 [Bacill... 34 5.4
sp|P17889|IF2_BACSU Translation initiation factor IF-2 >gi|... 34 5.5
ref|ZP_02065390.1| hypothetical protein BACOVA_02365 [Bacte... 34 5.5
gb|EEH42179.1| peroxin 14/17 [Paracoccidioides brasiliensis... 34 6.0
ref|YP_001785018.1| conserved hypothetical protein [Haemoph... 34 7.1
ref|ZP_02161795.1| multi-sensor signal transduction histidi... 34 9.1
ref|XP_751296.1| kinesin family protein (KinA) [Aspergillus... 34 9.1
ref|YP_501514.1| methyl-accepting chemotaxis sensory transd... 34 9.1
>gb|EDN62608.1| peroxin [Saccharomyces cerevisiae YJM789]
Length = 199
Score = 312 bits (799), Expect = 1e-83, Method: Composition-based stats.
Identities = 198/199 (99%), Positives = 199/199 (100%)
Query: 1 MTSINSFPRNIDWPSNIGIKKIEGTNPTVNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQK 60
MTSINSFPRNIDWPSNIGIKK+EGTNPTVNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQK
Sbjct: 1 MTSINSFPRNIDWPSNIGIKKVEGTNPTVNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQK 60
Query: 61 QYQQRNDFSLFVLLRLRRIIAQLQKRLVMTPVSSLGFNEQNNFVERSTQTSDDNIIREDN 120
QYQQRNDFSLFVLLRLRRIIAQLQKRLVMTPVSSLGFNEQNNFVERSTQTSDDNIIREDN
Sbjct: 61 QYQQRNDFSLFVLLRLRRIIAQLQKRLVMTPVSSLGFNEQNNFVERSTQTSDDNIIREDN 120
Query: 121 SHWAEMIYQLQNMKQELQYFNRSSGQPSESIDDFVFQIKMVTDQVELTDRSRAFSNKSRN 180
SHWAEMIYQLQNMKQELQYFNRSSGQPSESIDDFVFQIKMVTDQVELTDRSRAFSNKSRN
Sbjct: 121 SHWAEMIYQLQNMKQELQYFNRSSGQPSESIDDFVFQIKMVTDQVELTDRSRAFSNKSRN 180
Query: 181 IIQGIREIKGWFVNGQVPR 199
IIQGIREIKGWFVNGQVPR
Sbjct: 181 IIQGIREIKGWFVNGQVPR 199
>ref|NP_014185.1| Peroxisomal membrane peroxin and subunit of the docking complex
that facilitates the import of peroxisomal matrix
proteins; required for peroxisome biogenesis; Pex17p
[Saccharomyces cerevisiae]
sp|P40155|PEX17_YEAST Peroxisomal membrane protein PEX17 (Peroxin-17)
emb|CAA55494.1| N1319 [Saccharomyces cerevisiae]
emb|CAA96116.1| unnamed protein product [Saccharomyces cerevisiae]
Length = 199
Score = 312 bits (799), Expect = 1e-83, Method: Composition-based stats.
Identities = 199/199 (100%), Positives = 199/199 (100%)
Query: 1 MTSINSFPRNIDWPSNIGIKKIEGTNPTVNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQK 60
MTSINSFPRNIDWPSNIGIKKIEGTNPTVNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQK
Sbjct: 1 MTSINSFPRNIDWPSNIGIKKIEGTNPTVNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQK 60
Query: 61 QYQQRNDFSLFVLLRLRRIIAQLQKRLVMTPVSSLGFNEQNNFVERSTQTSDDNIIREDN 120
QYQQRNDFSLFVLLRLRRIIAQLQKRLVMTPVSSLGFNEQNNFVERSTQTSDDNIIREDN
Sbjct: 61 QYQQRNDFSLFVLLRLRRIIAQLQKRLVMTPVSSLGFNEQNNFVERSTQTSDDNIIREDN 120
Query: 121 SHWAEMIYQLQNMKQELQYFNRSSGQPSESIDDFVFQIKMVTDQVELTDRSRAFSNKSRN 180
SHWAEMIYQLQNMKQELQYFNRSSGQPSESIDDFVFQIKMVTDQVELTDRSRAFSNKSRN
Sbjct: 121 SHWAEMIYQLQNMKQELQYFNRSSGQPSESIDDFVFQIKMVTDQVELTDRSRAFSNKSRN 180
Query: 181 IIQGIREIKGWFVNGQVPR 199
IIQGIREIKGWFVNGQVPR
Sbjct: 181 IIQGIREIKGWFVNGQVPR 199
>ref|XP_001645849.1| hypothetical protein Kpol_1054p38 [Vanderwaltozyma polyspora DSM
70294]
gb|EDO17991.1| hypothetical protein Kpol_1054p38 [Vanderwaltozyma polyspora DSM
70294]
Length = 194
Score = 277 bits (709), Expect = 3e-73, Method: Composition-based stats.
Identities = 71/187 (37%), Positives = 115/187 (61%), Gaps = 1/187 (0%)
Query: 12 DWPSNIGIKKIEGTNPTVNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQKQYQQRNDFSLF 71
+WP+ + + + NPT+ AI+ + YN G + +Y ++ +P+L++QY+QR D +
Sbjct: 7 NWPNPVQVVRTTRPNPTIEAIRSIFYNSGFTVSVIYLLLEFIFKPSLERQYEQRVDLNGI 66
Query: 72 VLLRLRRIIAQLQKRLVMTPVSSLGFNEQNNFVERSTQTSDDN-IIREDNSHWAEMIYQL 130
LL++R ++ LQKRL TPVS +GFNE +E+STQT +D IIR+ + W + L
Sbjct: 67 CLLQVRHLVVSLQKRLKTTPVSIIGFNETEATIEKSTQTGEDKRIIRDYDDPWEGINDNL 126
Query: 131 QNMKQELQYFNRSSGQPSESIDDFVFQIKMVTDQVELTDRSRAFSNKSRNIIQGIREIKG 190
+ +L FN G+PS +++F Q K++TDQ+ +++ S +I QGIRE+KG
Sbjct: 127 EQCSFKLDLFNNDCGRPSIIVENFTDQTKVLTDQLNDYNQTNNKPKISHDITQGIREMKG 186
Query: 191 WFVNGQV 197
WFVNG +
Sbjct: 187 WFVNGVI 193
>ref|XP_453914.1| unnamed protein product [Kluyveromyces lactis]
emb|CAH01010.1| unnamed protein product [Kluyveromyces lactis NRRL Y-1140]
Length = 195
Score = 259 bits (662), Expect = 8e-68, Method: Composition-based stats.
Identities = 55/193 (28%), Positives = 100/193 (51%), Gaps = 7/193 (3%)
Query: 12 DWPSNIGIKKIEGTNPTVNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQKQYQQRNDFSLF 71
+WP+ I + + TV I+ L Y+ G + +Y I + + L K Y QR + S
Sbjct: 4 NWPAEKDIMPYKKPS-TVKEIELLFYHTGVTVSAIYVFIHLVLSRVLSKNYDQRLELSHD 62
Query: 72 VLLRLRRIIAQLQKRLVMTPVSSLGFN-----EQNNFVERSTQTSDDNIIREDNSHWAEM 126
VL+R+RR++ L R+ T V+++G N E +V+R QT + ++N+ W +
Sbjct: 63 VLMRIRRLVNSLMSRVKSTSVTAVGDNQRSIQETKVYVDRCQQTGEQLESVDENAGWTRI 122
Query: 127 IYQLQNMKQELQYFNRSSGQPSESIDDFVFQIKMVTDQVELTDRSRAFSNKSRNIIQGIR 186
+L + L+ ++ S+ + F+ K+ TDQ++ + NIIQ +R
Sbjct: 123 NLRLNTLTDVLRIYHTDMRNISD-FESLSFKTKLFTDQLKDSSWRNKKQEGYSNIIQSVR 181
Query: 187 EIKGWFVNGQVPR 199
E+KGWF++G++P+
Sbjct: 182 EMKGWFIHGRIPK 194
>ref|NP_982771.1| ABL176Wp [Ashbya gossypii ATCC 10895]
gb|AAS50595.1| ABL176Wp [Ashbya gossypii ATCC 10895]
Length = 207
Score = 253 bits (648), Expect = 4e-66, Method: Composition-based stats.
Identities = 60/207 (28%), Positives = 100/207 (48%), Gaps = 21/207 (10%)
Query: 10 NIDWPSNIGIKKIEGTNPTVNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQKQYQQRNDFS 69
+I WP+ I + T+ I GL YN G +++ +Y + ++ + P L + + QR + S
Sbjct: 3 HIKWPNEANIVPYKRP-KTLQQITGLFYNAGFLFSAMYLLTSLILRPLLLRSHNQRLEMS 61
Query: 70 LFVLLRLRRIIAQLQKRLVMTPVSSLGFNEQ--------NNFVERSTQTSDDNIIREDNS 121
LLRLR+++ L KRL TPV+ +GFNE+ +V+R +QTS ++ + N
Sbjct: 62 YITLLRLRKLVNDLAKRLKTTPVTVIGFNERVAEGTNSGVKYVDRCSQTSQED-FEQANM 120
Query: 122 H----------WAEMIYQLQNMKQELQYFNRSSGQPSESIDDFVFQIKMVTDQVELTDRS 171
H W + ++ L F + + D F F+ K++ D + R
Sbjct: 121 HLPHTDPSTENWERINGRISQAITSLNSFAYENAHTLDHCDRFSFEAKLLADSL-DQHRD 179
Query: 172 RAFSNKSRNIIQGIREIKGWFVNGQVP 198
+F+ K I I E+K WF+ G VP
Sbjct: 180 TSFNKKCTEISDTIIELKSWFIRGSVP 206
>ref|XP_448437.1| unnamed protein product [Candida glabrata]
emb|CAG61398.1| unnamed protein product [Candida glabrata CBS 138]
Length = 211
Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats.
Identities = 58/202 (28%), Positives = 99/202 (49%), Gaps = 14/202 (6%)
Query: 10 NIDWPSNIGIKKIEGTNPTVNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQKQYQQRNDFS 69
+I WP I+ + N T+ I+ + N G ++ Y ++ V+P+L++QY QR + +
Sbjct: 8 SIQWPDPQRIRNYKARNKTIRTIQSIFSNTGLLFTIFYVAVSTIVQPSLERQYNQRIELT 67
Query: 70 LFVLLRLRRIIAQLQKRLVMTPVSSLGF-NEQNNFVERSTQTSDDNIIRE---------- 118
LL +RR+ +L +RL S L + + +R TQT I +
Sbjct: 68 AGALLEVRRLTNKLLRRLKSKNSSELELRSNTQEYADRCTQTESRYITDDFESDDDMHND 127
Query: 119 ---DNSHWAEMIYQLQNMKQELQYFNRSSGQPSESIDDFVFQIKMVTDQVELTDRSRAFS 175
++ W + +L +K L +N S +PS ++++ FQ K+V DQ+ + +
Sbjct: 128 SDDNSITWNIISKKLVEVKDSLNRYNESCDRPSINMENLTFQSKLVVDQLSVAKDADKLG 187
Query: 176 NKSRNIIQGIREIKGWFVNGQV 197
SR + IRE+KGWFVNG V
Sbjct: 188 ELSRTSVNNIREMKGWFVNGLV 209
>gb|ABC70471.1| peroxin 17 [Pichia angusta]
Length = 246
Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats.
Identities = 36/200 (18%), Positives = 76/200 (38%), Gaps = 41/200 (20%)
Query: 11 IDWPSNIGIKKIEGTNPTVNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQKQYQQRNDFSL 70
I +P + G + T+ + LL G A Y V+ + V+P L+ +++R D +
Sbjct: 6 IAFPEDAGPVSPARPHGTLRYVLRLLTLSGYGLATFYVVVLLVVKPMLKLSFERRRDLAN 65
Query: 71 FVLLRLRRIIAQLQKRLVMTPVSSLGFNEQNN-FVER--STQTSDDNIIREDNSH----- 122
LR + L +++ P S+ N + + + ST+T +D+++ ++
Sbjct: 66 HCFGHLRALYGGLVEKVKFVP--SVELNYRGVLYKDSMCSTETDEDDVVVQEEHTRGVRF 123
Query: 123 --------WAEMIY--------QLQNMKQELQ-----YFNRSSGQPS----------ESI 151
+ E+ L +K L ++ + PS +
Sbjct: 124 DDEVSRRDYNELNLSQTVILGQNLDRLKDTLNKIRVSSYHHKNSVPSFGGRLAASDVSEM 183
Query: 152 DDFVFQIKMVTDQVELTDRS 171
+FQ+K + + VE+
Sbjct: 184 QPLIFQVKQLKNCVEMVSSD 203
>gb|AAF19606.1| Pex17p [Pichia pastoris]
Length = 267
Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 34/203 (16%), Positives = 71/203 (34%), Gaps = 46/203 (22%)
Query: 9 RNIDWPSNIGIKKIEGTNPT-VNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQKQYQQRND 67
+ I +P N+ ++ P + + LLY GS +Y + + P L+ QY++R
Sbjct: 8 QAIAFPENLPPSRLVTPKPAALLYLTRLLYGSGSFLVVVYALALFLIRPMLKLQYERRGS 67
Query: 68 FSLFVLLRLRRIIAQLQKRLVMTPVSSLGFNEQNNFVERSTQTS---------------- 111
+ L +L + + KRL P + + + + QT
Sbjct: 68 YLNHCLDKLNAMYGLVAKRLRFVPEVRVKYGNT-VYSDAGMQTDPKKEEVDNTFNPFLYQ 126
Query: 112 ---------------DDNIIREDNSHWAEMIYQLQNMKQELQ-----YFNRSSGQPS--- 148
+D + D S + +Q++K L+ + ++ S
Sbjct: 127 HKYQNNGFGRQTIKFEDEEEKRDRSESDRLGGSIQDLKNTLEKLEVSSYKQAGASLSLRG 186
Query: 149 -----ESIDDFVFQIKMVTDQVE 166
+ +FQ+K + + +E
Sbjct: 187 DTSRMSEMQPLMFQVKQLENYME 209
>ref|XP_001384161.2| hypothetical protein PICST_44738 [Pichia stipitis CBS 6054]
gb|ABN66132.2| predicted protein [Pichia stipitis CBS 6054]
Length = 231
Score = 47.8 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 37/218 (16%), Positives = 69/218 (31%), Gaps = 36/218 (16%)
Query: 14 PSNIGIKKIEGTNPTVNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQKQYQQRNDFSLFVL 73
P+ + + V + L + Y V ++P L+ +R +
Sbjct: 16 PNAYTLSPASRQSRIVVYLIKLTHGSAVALVLAYAVGFFVLKPLLETNAVRRLELLELFR 75
Query: 74 LRLRRIIAQLQKRLVMTPVSSLGFNEQNN-FVERSTQTSDDNIIREDNSH---------- 122
+LR L R+ P+ + N + + QT D+ + N H
Sbjct: 76 GKLRDCYLNLIGRVSYIPIVAKKKNNDGKLYADAVIQT--DDSFLDKNRHRNKAEEEEEE 133
Query: 123 -------WAEMIYQLQNMKQELQYFNRSSGQPSESIDDFVFQIKMVTDQVELT------- 168
M+ +L + ++L S + F IK ++ +L
Sbjct: 134 LAKDKLYQNRMVKKLNKLSEKLNECIPYSTEKLSYYKSTNFSIKDFQNKADLKYFNYSEF 193
Query: 169 ---------DRSRAFSNKSRNIIQGIREIKGWFVNGQV 197
D+ N + IR IKG +++GQV
Sbjct: 194 ISTEIPAEGDKPARKKNIAVETQNEIRSIKGLYMSGQV 231
>ref|XP_001526034.1| hypothetical protein LELG_02592 [Lodderomyces elongisporus NRRL
YB-4239]
gb|EDK44413.1| hypothetical protein LELG_02592 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 223
Score = 44.4 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 30/206 (14%), Positives = 68/206 (33%), Gaps = 28/206 (13%)
Query: 18 GIKKIEGTNPTVNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQKQYQQRNDFSLFVLLRLR 77
+ + + + + L + Y V + ++P L++ +R D V LR
Sbjct: 20 NLLSPKSKSQLLIYLIKLTHGASVSLIIAYAVGFLILKPLLEQTASRRLDLLECVRGNLR 79
Query: 78 RIIAQLQKRLVMTPVSSLGFNEQNNFVERSTQT--------SDDNIIREDNSHWAEMIYQ 129
+ ++ P+ ++ + + QT + + + ++ H + +
Sbjct: 80 EFYLKAITKINYVPIVAIRRQN-KLLADAAVQTESTGSKEEGERDPLMQNELH-SRLKKI 137
Query: 130 LQNMKQELQYFNRS--SGQPSESIDDFVFQIK-----------MVTDQVELTDRS----- 171
++ ++ ++ S S + FQ K + D V
Sbjct: 138 ATFLQDSVRSYSMEGMSNYRSINYSIKDFQNKADLVYFNEDDFFLQDNVSSISNRPAGTK 197
Query: 172 RAFSNKSRNIIQGIREIKGWFVNGQV 197
N IR IKG F++GQ+
Sbjct: 198 TRKKNIVVETKNEIRSIKGLFMSGQI 223
>ref|XP_458097.1| hypothetical protein DEHA0C10516g [Debaryomyces hansenii CBS767]
emb|CAG86168.1| unnamed protein product [Debaryomyces hansenii CBS767]
Length = 238
Score = 43.6 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 37/210 (17%), Positives = 70/210 (33%), Gaps = 36/210 (17%)
Query: 24 GTNPTVNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQKQYQQRNDFSLFVLLRLRRIIAQL 83
+ + L + Y + ++P LQ +R D +LR L
Sbjct: 29 RKSKLFAYLIRLTHGSAITLTLAYIIGLFVLKPLLQTTASRRYDLLEQFRGKLRDCYLNL 88
Query: 84 QKRLVMTPVSSLGFNEQ--NNFVERSTQTSDDNI-------IREDNSHWA--------EM 126
R+ P+ ++ N+ + + QT+D + I E+ +
Sbjct: 89 IGRVSHIPIVAINKNDGSGKLYADAICQTTDSYLDSTSYKSISEEEEELNKKDKLFQDRL 148
Query: 127 IYQLQNMKQELQY--FNRSSGQPSESIDDFVFQ-------------IKMVTDQVELTDRS 171
+L + + L+ RS PS +F + ++ T TD S
Sbjct: 149 TTRLTRLSEILKNCEAYRSEEIPSYKTVNFALKDLQNKADLTYFNSNELFTATPNNTDSS 208
Query: 172 R----AFSNKSRNIIQGIREIKGWFVNGQV 197
N + + IR +KG F++GQ+
Sbjct: 209 SGSAPRKRNLAVDTKNEIRSMKGLFMSGQI 238
>ref|ZP_01118042.1| spermidine synthase [Polaribacter irgensii 23-P]
gb|EAR12551.1| spermidine synthase [Polaribacter irgensii 23-P]
Length = 518
Score = 43.2 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 50/121 (41%), Gaps = 9/121 (7%)
Query: 32 IKGLLYNGGSIYAFLYFVIAMFVEPTLQKQYQQRNDFSLFVLLRLRRIIAQLQKRLVMTP 91
+ GL Y + + F++A+ V + + +R+ L +L + + A L + T
Sbjct: 162 MLGLAY-TPFVLGIINFLVALIVFYRFKDKINKRSTLKLQAILFV--VFAALITGISFTE 218
Query: 92 VSSLGFNEQNNFVER---STQTSDDNIIRED--NSHWAEMIYQLQNMKQELQYFNRSSGQ 146
+ + EQ + ++ S QT I+ + N HW + LQ + + ++
Sbjct: 219 -PIIEWGEQKKYKDKVVYSEQTEYQKIVLTEWKNEHWLYLNGNLQFCSIDEKMYHEPLVH 277
Query: 147 P 147
P
Sbjct: 278 P 278
>ref|XP_001484370.1| hypothetical protein PGUG_03751 [Pichia guilliermondii ATCC 6260]
gb|EDK39653.1| hypothetical protein PGUG_03751 [Pichia guilliermondii ATCC 6260]
Length = 229
Score = 39.7 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 31/206 (15%), Positives = 65/206 (31%), Gaps = 30/206 (14%)
Query: 22 IEGTNPTVNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQKQYQQRNDFSLFVLLRLRRIIA 81
+ + L + Y + ++P L+ +R + F +LR
Sbjct: 24 TRKRSQLFVYLVKLTHGSAIALTMAYLIGYFGLKPLLETTAARRLELLEFYRGKLRDCYL 83
Query: 82 QLQKRLVMTPVSSLGFNE--QNNFVERSTQTSDDNII----REDNSHWAE-MIYQLQNMK 134
+L +++ P+ ++ N+ + + QT +I ++ +L+ K
Sbjct: 84 KLVEKVTYIPIVAINKNDGSGKLYADAVCQTPQSHISLNTKTDEEVEEERNKNDRLRQGK 143
Query: 135 QE----------LQYFNRSSGQPSES--IDDFV--FQIK--------MVTDQVELTDRSR 172
L G+ + + V FQ K + Q E
Sbjct: 144 LTSKLNQLLSRLLDCHAYQVGEMPNYKLVLNLVKEFQSKSDLDMFDDLFIGQAENKTTGT 203
Query: 173 AFSNKSR-NIIQGIREIKGWFVNGQV 197
+ IR IKG +++GQ+
Sbjct: 204 LRRKNYVLEVTNEIRSIKGLYMSGQI 229
>ref|XP_001399309.1| hypothetical protein An02g01680 [Aspergillus niger]
emb|CAK96386.1| unnamed protein product [Aspergillus niger]
Length = 460
Score = 39.4 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 26/161 (16%), Positives = 58/161 (36%), Gaps = 5/161 (3%)
Query: 22 IEGTNP--TVNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQKQYQQRNDFSLFVLLRLRRI 79
P T+ ++ LY I A Y ++P L R + + L+++
Sbjct: 168 PTKPPPLVTLRSVLYTLYGAAGISASFYGASEYLIKPMLSNLTSARQELASTATSNLQKL 227
Query: 80 IAQLQKRLVMTPVSSLGFNEQNNFVERSTQTSDDNIIREDNSHWAEMIYQLQNMKQELQY 139
+L++ + + P S N+ N S+ T ++I + + +
Sbjct: 228 NEKLEQNVSVIPESL--KNKTANVENDSSSTDTESITSDPTELFHRDVATQTATSDFAAT 285
Query: 140 FNRSSGQPSESIDDFVFQIKMVTDQVELTDRSRAFSNKSRN 180
+N S+ ++ D VTD ++ + R+ + +
Sbjct: 286 YNNSNKTGTDK-DTPADPTAAVTDHLKRLESIRSQLRECSD 325
>ref|XP_532269.2| PREDICTED: similar to laminin, alpha 4 precursor [Canis familiaris]
Length = 1806
Score = 39.0 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 53/138 (38%), Gaps = 23/138 (16%)
Query: 63 QQRNDFSLFVLLRLRRIIAQLQKRLVMTPVSSLGFNEQNNFVERSTQTSDDNIIREDNSH 122
+R D +L LR + KRL T E+ + +R Q I E +
Sbjct: 677 NRRVDGALARKSALRNRLNDAIKRLQAT--------ERGDAHQRLGQ--SKLITEEASKT 726
Query: 123 WAE-------MIYQLQNMKQELQY-----FNRSSGQPSESIDDFVFQIKMVTDQVELTDR 170
E M L N Q LQ +N + +++ + + + DQ+ ++
Sbjct: 727 TVEVQQAAAPMADNLTNWSQNLQSFDSSAYNTAVDSAQDAVRNLTEVVPQLLDQLRTVEQ 786
Query: 171 SRAFSNKSRNIIQGIREI 188
R SN S +I Q IRE+
Sbjct: 787 KRPASNVSASI-QRIREL 803
>ref|YP_001127972.1| translation initiation factor IF-2 [Streptococcus pyogenes str.
Manfredo]
sp|A2RD01|IF2_STRPG Translation initiation factor IF-2
emb|CAM29724.1| translation initiation factor IF-2 [Streptococcus pyogenes str.
Manfredo]
Length = 953
Score = 38.6 bits (89), Expect = 0.23, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 72 VLLRLRRIIAQLQKRLV----MTPVSSLGFNEQ 100
R+R ++ L +R+ TPVS G NE
Sbjct: 667 TFGRVRAMVNDLGRRVKSAEPSTPVSITGLNET 699
>ref|NP_665299.1| translation initiation factor IF-2 [Streptococcus pyogenes MGAS315]
gb|AAM80102.1| putative initiation factor 2 [Streptococcus pyogenes MGAS315]
Length = 934
Score = 38.6 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 72 VLLRLRRIIAQLQKRLV----MTPVSSLGFNEQ 100
R+R ++ L +R+ TPVS G NE
Sbjct: 648 TFGRVRAMVNDLGRRVKSAEPSTPVSITGLNET 680
>ref|YP_603016.1| translation initiation factor IF-2 [Streptococcus pyogenes
MGAS10750]
sp|Q1J5B4|IF2_STRPF Translation initiation factor IF-2
gb|ABF38472.1| Bacterial Protein Translation Initiation Factor 2 (IF-2)
[Streptococcus pyogenes MGAS10750]
Length = 953
Score = 38.6 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 72 VLLRLRRIIAQLQKRLV----MTPVSSLGFNEQ 100
R+R ++ L +R+ TPVS G NE
Sbjct: 667 TFGRVRAMVNDLGRRVKSAEPSTPVSITGLNET 699
>ref|NP_801634.1| translation initiation factor IF-2 [Streptococcus pyogenes SSI-1]
sp|Q8K644|IF2_STRP3 Translation initiation factor IF-2
dbj|BAC63467.1| putative initiation factor 2 [Streptococcus pyogenes SSI-1]
Length = 953
Score = 38.6 bits (89), Expect = 0.25, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 72 VLLRLRRIIAQLQKRLV----MTPVSSLGFNEQ 100
R+R ++ L +R+ TPVS G NE
Sbjct: 667 TFGRVRAMVNDLGRRVKSAEPSTPVSITGLNET 699
>ref|NP_269745.1| translation initiation factor IF-2 [Streptococcus pyogenes M1 GAS]
ref|YP_060775.1| translation initiation factor IF-2 [Streptococcus pyogenes
MGAS10394]
ref|YP_280917.1| translation initiation factor IF-2 [Streptococcus pyogenes
MGAS6180]
ref|YP_282772.1| translation initiation factor IF-2 [Streptococcus pyogenes
MGAS5005]
ref|YP_597142.1| translation initiation factor IF-2 [Streptococcus pyogenes
MGAS9429]
ref|YP_599139.1| translation initiation factor IF-2 [Streptococcus pyogenes
MGAS10270]
ref|YP_601031.1| translation initiation factor IF-2 [Streptococcus pyogenes
MGAS2096]
sp|Q1JAC1|IF2_STRPB Translation initiation factor IF-2
sp|Q1JKH1|IF2_STRPC Translation initiation factor IF-2
sp|Q1JFG4|IF2_STRPD Translation initiation factor IF-2
sp|Q99YG1|IF2_STRP1 Translation initiation factor IF-2
sp|Q5XAH1|IF2_STRP6 Translation initiation factor IF-2
sp|Q48RU8|IF2_STRPM Translation initiation factor IF-2
gb|AAK34466.1| putative initiation factor 2 [Streptococcus pyogenes M1 GAS]
gb|AAT87592.1| Translation Initiation Factor 2 [Streptococcus pyogenes MGAS10394]
gb|AAX72562.1| bacterial protein translation initiation factor 2 (IF-2)
[Streptococcus pyogenes MGAS6180]
gb|AAZ52027.1| bacterial protein translation initiation factor 2 [Streptococcus
pyogenes MGAS5005]
gb|ABF32598.1| bacterial protein translation initiation factor 2 (IF-2)
[Streptococcus pyogenes MGAS9429]
gb|ABF34595.1| Bacterial Protein Translation Initiation Factor 2 (IF-2)
[Streptococcus pyogenes MGAS10270]
gb|ABF36487.1| Bacterial Protein Translation Initiation Factor 2 (IF-2)
[Streptococcus pyogenes MGAS2096]
Length = 953
Score = 38.6 bits (89), Expect = 0.25, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 72 VLLRLRRIIAQLQKRLV----MTPVSSLGFNEQ 100
R+R ++ L +R+ TPVS G NE
Sbjct: 667 TFGRVRAMVNDLGRRVKSAEPSTPVSITGLNET 699
>ref|NP_607759.1| translation initiation factor IF-2 [Streptococcus pyogenes
MGAS8232]
sp|Q8NZU7|IF2_STRP8 Translation initiation factor IF-2
gb|AAL98258.1| putative initiation factor 2 [Streptococcus pyogenes MGAS8232]
Length = 953
Score = 38.6 bits (89), Expect = 0.25, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 72 VLLRLRRIIAQLQKRLV----MTPVSSLGFNEQ 100
R+R ++ L +R+ TPVS G NE
Sbjct: 667 TFGRVRAMVNDLGRRVKSAEPSTPVSITGLNET 699
>ref|ZP_00365886.1| COG0532: Translation initiation factor 2 (IF-2; GTPase)
[Streptococcus pyogenes M49 591]
Length = 953
Score = 38.6 bits (89), Expect = 0.25, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 72 VLLRLRRIIAQLQKRLV----MTPVSSLGFNEQ 100
R+R ++ L +R+ TPVS G NE
Sbjct: 667 TFGRVRAMVNDLGRRVKSAEPSTPVSITGLNET 699
>ref|YP_001199212.1| translation initiation factor IF-2 [Streptococcus suis 05ZYH33]
ref|YP_001201406.1| translation initiation factor IF-2 [Streptococcus suis 98HAH33]
sp|A4W3R7|IF2_STRS2 Translation initiation factor IF-2
sp|A4VXH3|IF2_STRSY Translation initiation factor IF-2
gb|ABP90812.1| Translation initiation factor 2 (IF-2; GTPase) [Streptococcus suis
05ZYH33]
gb|ABP93006.1| Translation initiation factor 2 (IF-2; GTPase) [Streptococcus suis
98HAH33]
Length = 940
Score = 38.6 bits (89), Expect = 0.26, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 72 VLLRLRRIIAQLQKRLVM----TPVSSLGFNEQ 100
R+R + L +R+ TPVS G NE
Sbjct: 655 TFGRVRAMTNDLGRRVKTAGPSTPVSITGLNET 687
>ref|ZP_01254880.1| spermidine synthase [Psychroflexus torquis ATCC 700755]
gb|EAS70294.1| spermidine synthase [Psychroflexus torquis ATCC 700755]
Length = 518
Score = 38.2 bits (88), Expect = 0.32, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 50/121 (41%), Gaps = 9/121 (7%)
Query: 32 IKGLLYNGGSIYAFLYFVIAMFVEPTLQKQYQQRNDFSLFVLLRLRRIIAQLQKRLVMTP 91
I GL Y + + F++A+ V + + +R+ L +L + + A L + T
Sbjct: 162 IIGLAY-TPFVLGIINFLVALIVFYRFKDKINKRSTVRLQAILLI--VFAILITGISFTE 218
Query: 92 VSSLGFNEQNNFVER---STQTSDDNIIRED--NSHWAEMIYQLQNMKQELQYFNRSSGQ 146
+ + EQ + ++ S QT I+ + + HW + LQ + + ++
Sbjct: 219 -PIIQWGEQKKYKDKVVYSEQTEYQKIVLTEWKDEHWLYLNGNLQFCSIDEKMYHEPLVH 277
Query: 147 P 147
P
Sbjct: 278 P 278
>ref|YP_001449862.1| Translation initiation factor IF-2 [Streptococcus gordonii str.
Challis substr. CH1]
sp|A8AVQ2|IF2_STRGC Translation initiation factor IF-2
gb|ABV09252.1| Translation initiation factor IF-2 [Streptococcus gordonii str.
Challis substr. CH1]
Length = 953
Score = 38.2 bits (88), Expect = 0.32, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 72 VLLRLRRIIAQLQKRLV----MTPVSSLGFNEQ 100
R+R + L +R+ TPVS G NE
Sbjct: 668 TFGRVRAMTNDLGRRVKVAGPSTPVSITGLNET 700
>ref|YP_001035823.1| translation initiation factor IF-2 [Streptococcus sanguinis SK36]
sp|A3CQ18|IF2_STRSV Translation initiation factor IF-2
gb|ABN45273.1| Translation initiation factor IF-2, putative [Streptococcus
sanguinis SK36]
Length = 930
Score = 37.8 bits (87), Expect = 0.39, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 72 VLLRLRRIIAQLQKRLV----MTPVSSLGFNEQ 100
R+R + L +R+ TPVS G NE
Sbjct: 645 TFGRVRAMTNDLGRRVKVAGPSTPVSITGLNET 677
>ref|XP_714449.1| peroxisomal membrane protein Pex17 fragment [Candida albicans
SC5314]
gb|EAK95385.1| potential peroxisomal membrane protein Pex17 fragment [Candida
albicans SC5314]
Length = 241
Score = 37.8 bits (87), Expect = 0.46, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 44/116 (37%), Gaps = 3/116 (2%)
Query: 8 PRNIDWPSNIGIKKIEGTNPTVNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQKQYQQRND 67
P + + + I K + + + I L Y + ++P ++ +R D
Sbjct: 15 PASYNNLNTANITKSK--SQILLYIIKLTRRSSIGLILFYILGLFIIKPLMELNVTRRKD 72
Query: 68 FSLFVLLRLRRIIAQLQKRLVMTPVSSLGFNEQNN-FVERSTQTSDDNIIREDNSH 122
+ ++ +LR + ++ P+ ++ + + + QT ++N NS
Sbjct: 73 YLDYIRGKLRDFYLKSITKVQYIPIVAIKNKQTGKLYSDAIIQTDNNNNKLSTNST 128
>ref|YP_001894491.1| capsular exopolysaccharide family [Burkholderia phytofirmans PsJN]
gb|ACD15267.1| capsular exopolysaccharide family [Burkholderia phytofirmans PsJN]
Length = 784
Score = 37.4 bits (86), Expect = 0.64, Method: Composition-based stats.
Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 18/106 (16%)
Query: 16 NIGIKKIEGTNPTVNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQKQYQQRNDFSLFVLLR 75
+ K + + G+ GG I AFLY I +L+ +L V
Sbjct: 436 PVDPVKPKRP-----LVIGVGAAGGLIVAFLYIFIRRLWSSSLENSVVAERHLNLPVFGH 490
Query: 76 LRRIIAQLQKRLVMT-----PVSSLGFNEQNNFVERSTQTSDDNII 116
+ + + Q RL P + G + R+ QT+D+ I
Sbjct: 491 V--LFSDEQARLDRAQNLNFPSAKKGLS------GRAQQTADERIT 528
>gb|EDU48260.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 408
Score = 37.0 bits (85), Expect = 0.68, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 16/107 (14%)
Query: 5 NSFPRNIDWPS--------------NIGIKKIEGTNP--TVNAIKGLLYNGGSIYAFLYF 48
+S PR ++ P + E P T N + Y G + A +Y
Sbjct: 141 SSPPRAVNVPEYQPQPREIPPIVTYPEFLASTEKPPPLITTNRLVNTAYITGGLMASIYG 200
Query: 49 VIAMFVEPTLQKQYQQRNDFSLFVLLRLRRIIAQLQKRLVMTPVSSL 95
+ + P +K + R+DF+ +L+ + +L K + + P + +
Sbjct: 201 LSKFIIAPMTEKLAESRHDFASHTQAQLKELNERLGKAVSVDPATKV 247
>gb|AAC52982.1| laminin alpha 4 chain [Mus musculus]
Length = 1815
Score = 37.0 bits (85), Expect = 0.72, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 49/131 (37%), Gaps = 20/131 (15%)
Query: 70 LFVLLRLRRIIAQLQKRLVMTPVSSLGFNEQNNFVERSTQTSDDNIIREDNSHW------ 123
L R R + +L + L E+ + +R Q II E N
Sbjct: 692 GGALARKRALRGRLHDAVK-----QLQAAERGDAHQRLGQ--SRLIIEEANKTTMAVQQV 744
Query: 124 -AEMIYQLQNMKQELQY-----FNRSSGQPSESIDDFVFQIKMVTDQVELTDRSRAFSNK 177
M L N Q LQ +N + +++ + + + DQ+ ++ R SN
Sbjct: 745 TTPMANNLSNWSQNLQTFDSSAYNTAVDSARDAVRNLTEVVPQLLDQLRTVEQKRPASNI 804
Query: 178 SRNIIQGIREI 188
S +I Q IRE+
Sbjct: 805 SASI-QRIREL 814
>ref|ZP_00780296.1| Translation initiation factor IF-2 [Streptococcus agalactiae
18RS21]
gb|EAO63099.1| Translation initiation factor IF-2 [Streptococcus agalactiae
18RS21]
Length = 335
Score = 37.0 bits (85), Expect = 0.82, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 72 VLLRLRRIIAQLQKRLV----MTPVSSLGFNE 99
R+R + L +R+ TPVS G NE
Sbjct: 49 TFGRVRAMTNDLGRRVKVAGPSTPVSITGLNE 80
>ref|XP_001400155.1| hypothetical protein An02g10270 [Aspergillus niger]
emb|CAK44375.1| unnamed protein product [Aspergillus niger]
Length = 1083
Score = 37.0 bits (85), Expect = 0.83, Method: Composition-based stats.
Identities = 26/115 (22%), Positives = 40/115 (34%), Gaps = 15/115 (13%)
Query: 61 QYQQRNDFSLFVLLRLRRII-------AQLQKRLVM-----TPVSSLGFNEQNNFVERST 108
Q + R L L R+R + + + P SS NE V ST
Sbjct: 496 QLRSRLHLHLTGLARVRHTTPAATAFKTAVLREMKSLIRKHMPSSSDDDNESVVSV--ST 553
Query: 109 QTSDDNIIREDNSHWAEMIYQLQNMKQELQYFNRSSGQPSESIDDFVFQIKMVTD 163
Q S +E +S A + + + R SES+ Q+K++ D
Sbjct: 554 QKSQQLSQQEKSSILAR-NLRALDAQDSYNMLARVYTGISESLRRLSVQVKVLLD 607
>ref|ZP_01408044.1| hypothetical protein SpneT_02001516 [Streptococcus pneumoniae
TIGR4]
Length = 953
Score = 37.0 bits (85), Expect = 0.85, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 72 VLLRLRRIIAQLQKRLV----MTPVSSLGFNE 99
R+R + L +R+ TPVS G NE
Sbjct: 668 TFGRVRAMTNDLGRRVKVAGPSTPVSITGLNE 699
>ref|ZP_00790142.1| initiation factor IF2 [Streptococcus agalactiae 515]
gb|EAO71141.1| initiation factor IF2 [Streptococcus agalactiae 515]
Length = 335
Score = 37.0 bits (85), Expect = 0.85, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 72 VLLRLRRIIAQLQKRLV----MTPVSSLGFNE 99
R+R + L +R+ TPVS G NE
Sbjct: 49 TFGRVRAMTNDLGRRVKVAGPSTPVSITGLNE 80
>ref|NP_345072.1| translation initiation factor IF-2 [Streptococcus pneumoniae TIGR4]
ref|ZP_01833567.1| translation initiation factor IF-2 [Streptococcus pneumoniae
SP19-BS75]
sp|Q97S57|IF2_STRPN Translation initiation factor IF-2
gb|AAK74712.1| translation initiation factor IF-2 [Streptococcus pneumoniae TIGR4]
gb|EDK70312.1| translation initiation factor IF-2 [Streptococcus pneumoniae
SP19-BS75]
Length = 958
Score = 36.7 bits (84), Expect = 0.88, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 72 VLLRLRRIIAQLQKRLV----MTPVSSLGFNE 99
R+R + L +R+ TPVS G NE
Sbjct: 673 TFGRVRAMTNDLGRRVKVAGPSTPVSITGLNE 704
>ref|ZP_01822057.1| translation initiation factor IF-2 [Streptococcus pneumoniae
SP9-BS68]
ref|ZP_01825698.1| translation initiation factor IF-2 [Streptococcus pneumoniae
SP11-BS70]
ref|ZP_02722416.1| translation initiation factor IF-2 [Streptococcus pneumoniae
MLV-016]
gb|EDK62916.1| translation initiation factor IF-2 [Streptococcus pneumoniae
SP11-BS70]
gb|EDK79972.1| translation initiation factor IF-2 [Streptococcus pneumoniae
SP9-BS68]
gb|EDT98222.1| translation initiation factor IF-2 [Streptococcus pneumoniae
MLV-016]
Length = 930
Score = 36.7 bits (84), Expect = 0.89, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 72 VLLRLRRIIAQLQKRLV----MTPVSSLGFNE 99
R+R + L +R+ TPVS G NE
Sbjct: 645 TFGRVRAMTNDLGRRVKVAGPSTPVSITGLNE 676
>ref|ZP_01821328.1| translation initiation factor IF-2 [Streptococcus pneumoniae
SP6-BS73]
gb|EDK75687.1| translation initiation factor IF-2 [Streptococcus pneumoniae
SP6-BS73]
Length = 930
Score = 36.7 bits (84), Expect = 0.90, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 72 VLLRLRRIIAQLQKRLV----MTPVSSLGFNE 99
R+R + L +R+ TPVS G NE
Sbjct: 645 TFGRVRAMTNDLGRRVKVAGPSTPVSITGLNE 676
>ref|YP_002737777.1| translation initiation factor IF-2 [Streptococcus pneumoniae P1031]
gb|ACO20362.1| translation initiation factor IF-2 [Streptococcus pneumoniae P1031]
Length = 930
Score = 36.7 bits (84), Expect = 0.90, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 72 VLLRLRRIIAQLQKRLV----MTPVSSLGFNE 99
R+R + L +R+ TPVS G NE
Sbjct: 645 TFGRVRAMTNDLGRRVKVAGPSTPVSITGLNE 676
>ref|ZP_01829405.1| translation initiation factor IF-2 [Streptococcus pneumoniae
SP18-BS74]
ref|YP_001835236.1| translation initiation factor IF-2 [Streptococcus pneumoniae
CGSP14]
gb|EDK69566.1| translation initiation factor IF-2 [Streptococcus pneumoniae
SP18-BS74]
gb|ACB89771.1| translation initiation factor IF-2 [Streptococcus pneumoniae
CGSP14]
Length = 930
Score = 36.7 bits (84), Expect = 0.91, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 72 VLLRLRRIIAQLQKRLV----MTPVSSLGFNE 99
R+R + L +R+ TPVS G NE
Sbjct: 645 TFGRVRAMTNDLGRRVKVAGPSTPVSITGLNE 676
>ref|ZP_01817253.1| translation initiation factor IF-2 [Streptococcus pneumoniae
SP3-BS71]
ref|ZP_02712446.1| translation initiation factor IF-2 [Streptococcus pneumoniae SP195]
ref|ZP_02716856.1| translation initiation factor IF-2 [Streptococcus pneumoniae
CDC3059-06]
gb|EDK75193.1| translation initiation factor IF-2 [Streptococcus pneumoniae
SP3-BS71]
gb|EDT93449.1| translation initiation factor IF-2 [Streptococcus pneumoniae SP195]
gb|EDT97512.1| translation initiation factor IF-2 [Streptococcus pneumoniae
CDC3059-06]
Length = 930
Score = 36.7 bits (84), Expect = 0.91, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 72 VLLRLRRIIAQLQKRLV----MTPVSSLGFNE 99
R+R + L +R+ TPVS G NE
Sbjct: 645 TFGRVRAMTNDLGRRVKVAGPSTPVSITGLNE 676
>ref|NP_358075.1| translation initiation factor IF-2 [Streptococcus pneumoniae R6]
ref|YP_815988.1| translation initiation factor IF-2 [Streptococcus pneumoniae D39]
ref|ZP_02707748.1| translation initiation factor IF-2 [Streptococcus pneumoniae
CDC1873-00]
ref|ZP_02714697.1| translation initiation factor IF-2 [Streptococcus pneumoniae
CDC0288-04]
sp|Q04LW0|IF2_STRP2 Translation initiation factor IF-2
sp|Q8DQV2|IF2_STRR6 Translation initiation factor IF-2
gb|AAK99285.1| Initiation factor IF2 [Streptococcus pneumoniae R6]
gb|ABJ54884.1| initiation factor IF-2 [Streptococcus pneumoniae D39]
gb|EDT51882.1| translation initiation factor IF-2 [Streptococcus pneumoniae
CDC1873-00]
gb|EDT95560.1| translation initiation factor IF-2 [Streptococcus pneumoniae
CDC0288-04]
Length = 930
Score = 36.7 bits (84), Expect = 0.91, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 72 VLLRLRRIIAQLQKRLV----MTPVSSLGFNE 99
R+R + L +R+ TPVS G NE
Sbjct: 645 TFGRVRAMTNDLGRRVKVAGPSTPVSITGLNE 676
>ref|YP_001694043.1| translation initiation factor IF-2 [Streptococcus pneumoniae
Hungary19A-6]
gb|ACA37465.1| translation initiation factor IF-2 [Streptococcus pneumoniae
Hungary19A-6]
Length = 930
Score = 36.7 bits (84), Expect = 0.93, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 72 VLLRLRRIIAQLQKRLV----MTPVSSLGFNE 99
R+R + L +R+ TPVS G NE
Sbjct: 645 TFGRVRAMTNDLGRRVKVAGPSTPVSITGLNE 676
>ref|ZP_01835566.1| translation initiation factor IF-2 [Streptococcus pneumoniae
SP23-BS72]
gb|EDK81192.1| translation initiation factor IF-2 [Streptococcus pneumoniae
SP23-BS72]
Length = 930
Score = 36.7 bits (84), Expect = 0.94, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 72 VLLRLRRIIAQLQKRLV----MTPVSSLGFNE 99
R+R + L +R+ TPVS G NE
Sbjct: 645 TFGRVRAMTNDLGRRVKVAGPSTPVSITGLNE 676
>ref|ZP_02710175.1| translation initiation factor IF-2 [Streptococcus pneumoniae
CDC1087-00]
gb|EDT91774.1| translation initiation factor IF-2 [Streptococcus pneumoniae
CDC1087-00]
Length = 920
Score = 36.7 bits (84), Expect = 0.95, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 72 VLLRLRRIIAQLQKRLV----MTPVSSLGFNE 99
R+R + L +R+ TPVS G NE
Sbjct: 635 TFGRVRAMTNDLGRRVKVAGPSTPVSITGLNE 666
>ref|ZP_01827169.1| translation initiation factor IF-2 [Streptococcus pneumoniae
SP14-BS69]
gb|EDK66533.1| translation initiation factor IF-2 [Streptococcus pneumoniae
SP14-BS69]
Length = 930
Score = 36.7 bits (84), Expect = 0.97, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 72 VLLRLRRIIAQLQKRLV----MTPVSSLGFNE 99
R+R + L +R+ TPVS G NE
Sbjct: 645 TFGRVRAMTNDLGRRVKVAGPSTPVSITGLNE 676
>ref|NP_720869.1| translation initiation factor IF-2 [Streptococcus mutans UA159]
sp|Q8DVP9|IF2_STRMU Translation initiation factor IF-2
gb|AAN58175.1|AE014888_13 translation initiation factor 2 [Streptococcus mutans UA159]
Length = 916
Score = 36.7 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 7/56 (12%)
Query: 48 FVIAMFVEPTLQKQYQQRNDFSLFVLLRLRRIIAQLQKRLV----MTPVSSLGFNE 99
+ + TL + Q R+R + L +R+ TPVS G NE
Sbjct: 610 VATLLVQQGTL---HVQDPIVVGNTFGRVRAMTNDLGRRVKVAAPSTPVSITGLNE 662
>ref|YP_175724.1| translation initiation factor IF-2 [Bacillus clausii KSM-K16]
sp|Q5WFU2|IF2_BACSK Translation initiation factor IF-2
dbj|BAD64763.1| translation initiation factor IF-2 [Bacillus clausii KSM-K16]
Length = 761
Score = 36.7 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 72 VLLRLRRIIAQLQKRLVM----TPVSSLGFNEQNNFVERSTQTSDDNIIRE 118
R+R ++ + +R+ PV G NE +R D+ R+
Sbjct: 475 TFGRVRALVNDVGRRVKTAGPSAPVEITGLNEVPQAGDRFQAFEDEKKARQ 525
>ref|YP_822822.1| integral membrane sensor signal transduction histidine kinase
[Solibacter usitatus Ellin6076]
gb|ABJ82537.1| integral membrane sensor signal transduction histidine kinase
[Solibacter usitatus Ellin6076]
Length = 487
Score = 36.7 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 16/99 (16%)
Query: 69 SLFVLL---RLRRIIAQLQKRLV--MTPVSSLGFNEQNNFVERSTQTSDDNI---IREDN 120
S+ LL RLR +IA RL T VS+ +++ R+ + S D + + E N
Sbjct: 170 SVIALLISSRLRALIATPISRLAQAATSVSA-----TSDYSIRAQKLSGDELGVLVDEFN 224
Query: 121 SHWAEMIYQLQNMK---QELQYFNRSSGQPSESIDDFVF 156
+ + Q +K L+ N S + +E ++ F F
Sbjct: 225 QMLERVQLRDQELKQALDSLKSTNESLARSNEDLERFAF 263
>ref|XP_001437644.1| hypothetical protein GSPATT00038349001 [Paramecium tetraurelia
strain d4-2]
emb|CAK70247.1| unnamed protein product [Paramecium tetraurelia]
Length = 240
Score = 36.3 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 88 VMTPV-SSLGFNEQNNFVERSTQTSDDNIIRED-NSHWAEMIYQLQ---NMKQELQYFNR 142
TPV S+G +E+ + +T + + +R+ +H + + MKQ +Q FN
Sbjct: 98 QFTPVMRSVGVSEKVIESGKQIETDEIDRVRKKLQNHDNMISLLMDTQAQMKQTIQIFNT 157
Query: 143 SSGQPSESIDDFVFQIKMVTDQVELTD 169
S S+ + F +I + ++ T
Sbjct: 158 SDDIQSKMLSQFDDKIYQLKQELNDTK 184
>ref|XP_714498.1| peroxisomal membrane protein Pex17 fragment [Candida albicans
SC5314]
gb|EAK95440.1| potential peroxisomal membrane protein Pex17 fragment [Candida
albicans SC5314]
Length = 241
Score = 36.3 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 13/105 (12%), Positives = 38/105 (36%), Gaps = 3/105 (2%)
Query: 8 PRNIDWPSNIGIKKIEGTNPTVNAIKGLLYNGGSIYAFLYFVIAMFVEPTLQKQYQQRND 67
P + + + I + + + I L Y + ++P ++ +R D
Sbjct: 15 PASYNNLNTANI--TKSQSQILLYIIKLTRRSSIGLILFYILGLFIIKPLMELNVTRRKD 72
Query: 68 FSLFVLLRLRRIIAQLQKRLVMTPVSSLGFNEQNN-FVERSTQTS 111
+ ++ +LR + ++ P+ ++ + + + QT
Sbjct: 73 YLDYIRGKLRDFYLKSITKVQYIPIVAIKNKQTGKLYSDAIIQTD 117
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
Posted date: May 23, 2008 5:56 PM
Number of letters in database: 883,778,997
Number of sequences in database: 2,617,685
Database: /host/Blast/data/nr_perl/nr.01
Posted date: May 23, 2008 5:54 PM
Number of letters in database: 976,759,346
Number of sequences in database: 2,761,413
Database: /host/Blast/data/nr_perl/nr.02
Posted date: May 23, 2008 5:48 PM
Number of letters in database: 374,670,760
Number of sequences in database: 1,165,270
Database: /host/Blast/data/nr_perl/nr.03
Posted date: Apr 28, 2009 5:40 PM
Number of letters in database: 114,943,120
Number of sequences in database: 354,819
Lambda K H
0.314 0.165 0.465
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,115,292,042
Number of Sequences: 6899187
Number of extensions: 145579829
Number of successful extensions: 374220
Number of sequences better than 10.0: 211
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 344
Number of HSP's that attempted gapping in prelim test: 373929
Number of HSP's gapped (non-prelim): 524
length of query: 199
length of database: 2,350,152,223
effective HSP length: 127
effective length of query: 72
effective length of database: 1,473,955,474
effective search space: 106124794128
effective search space used: 106124794128
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 76 (33.6 bits)