Do-It-Yourself Block Search aligns a set of Blocks with a protein or DNA sequence. You can make blocks from unaligned protein sequences with Block Maker. If you need to convert another multiple alignment to BLOCKS format, use the Multiple Alignment Processor or the Block Formatter.
Enter your Blocks in BLOCKS format: ID x11543xbl; BLOCK AC x11543xblA; distance from previous block=(1,1) DE ../tmp/PTS1.blin BL UNK; width=12; seqs=98; 99.5%=830; strength=965 GOX1 ( 1) TEWDTPRPSARL 25 GGT1 ( 1) TQYDNNFGYSKM 48 EHHADH ( 1) WQSLAGSPSSKL 19 mmSerhl ( 1) LQGLQRMTSARL 21 mmCrot ( 1) HDMIQLMNTAHL 34 AAT2 ( 1) EVVRFYTIEAKL 40 AT5G18100.1 ( 1) IIGLQSSADAKL 24 mmEphx2 ( 1) TEVQNPSVTSKI 32 OPR3 ( 1) TDYPFLAPFSRL 28 mmEhhadh ( 1) WQSLAGPHSSKL 26 CIT2 ( 1) YKELVKNIESKL 26 DHRS4 ( 1) TVVVGGGTPSRL 31 LYS4 ( 1) KGGLEGWVKSQL 39 AOAT2 ( 1) SQYADNFGYSRM 50 mmCrat ( 1) RTLLQNHPRAKL 24 mmMlycd ( 1) SLVAQFQNNSKL 24 HMGCL ( 1) TSSKVAQATCKL 29 NUDT19 ( 1) NYIVNKRYTAHL 43 MLS ( 1) IVAHYPINVSRL 38 mmAgxt ( 1) REALQHCPKNKL 58 PTE2b ( 1) LGGTQKTAVPKL 27 PTE2 ( 1) LGGHEGTIPSKV 79 BAAT ( 1) RKHLIPDVTSQL 33 GNPAT ( 1) KTPIGKPATAKL 24 DAMOX ( 1) EKKLSRMPPSHL 25 mmPte2a ( 1) LDGKKKTIPAKL 20 mmGnpat ( 1) KKPIGKPATAKL 22 SPS19 ( 1) PEALIKSMTSKL 30 PAOX ( 1) WAPQVQQPRPRL 31 EPHX2 ( 1) SDARNPPVVSKM 41 CRAT ( 1) RALLQSHPRAKL 23 GSTK1 ( 1) MGPIPPAVNARL 41 PRDX5 ( 1) TCSLAPNIISQL 42 ACH2 ( 1) ARPPKPSGTSKL 22 IDE ( 1) VKPHINFMAAKL 37 PECI ( 1) AVVNFLSRKSKL 24 PTE1 ( 1) IRVKPQVSESKL 26 ACOX2 ( 1) IRPLLQSWRSKL 27 mmPaox ( 1) WDSQVEQSRPRL 35 MLYCD ( 1) SLVAQFQKNSKL 26 GOX2 ( 1) TEWDTPRHLPRL 38 IDP3 ( 1) SSNEDKKGMCKL 48 HAO2 ( 1) EINRNLVQFSRL 34 AGT ( 1) LQHHIPLIPSRI 35 AT3G06860.1 ( 1) LSAPVKQASSRL 20 mmDao1 ( 1) EKKLSRLPPSHL 23 PDCR ( 1) GLPDFASFSAKL 33 AT5G63380.1 ( 1) TKIAVDGNASKL 36 CHY1 ( 1) RNNLPALGIAKL 27 MLS1 ( 1) STKATPTDLSKL 24 mmHao3 ( 1) EISPDLIQFSRL 33 IDH1 ( 1) ENLKIKLAQAKL 25 PECR ( 1) KMKETFKEKAKL 41 CAT2 ( 1) ALENENKRKAKL 27 DCI1 ( 1) KQLQEGNRRHKL 34 mmAcox2 ( 1) IRPLMQSWKPKL 42 ECH1 ( 1) NKELKTVTFSKL 39 mmPecr ( 1) RIKESFKKKAKL 23 CROT ( 1) HDMIQLMNSTHL 65 mmBC016076 ( 1) LSGDKRPSPAKL 22 mmPte1 ( 1) IRLKPQVSESKL 26 mmAcox1 ( 1) YYKHLKPLQSKL 30 FOX2 ( 1) AAVKLSQAKSKL 21 AT1G68010.1 ( 1) NSKALGLPVSKL 22 AT3G51840.1 ( 1) IASFKPATRSRL 30 mmUox ( 1) TGTVKRKLPSRL 26 PCS60 ( 1) TFAKSSRNKSKL 32 DASOX ( 1) HALRTPIPKSNL 36 mmAmacr ( 1) RIVESDKLKANL 35 NPY1 ( 1) YKNLRKTSSSHL 33 mmHsd17b4 ( 1) KLQMILKDYAKL 35 HSD17B4 ( 1) KLQMILKDYAKL 35 MDH3 ( 1) KGKSFILDSSKL 29 AGXT ( 1) RAALQHCPKKKL 57 mmDecr2 ( 1) QLLEFESFSAKL 43 AT2G35690.1 ( 1) PLIKQRFRSAKL 28 mmPte2b ( 1) LGSTHSRASCRL 46 mmAcox3 ( 1) NKSVADRLKSQL 29 ACOX3 ( 1) NKSVADRLKSQL 29 TES1 ( 1) VYGSERDIRAKF 92 mmHao1 ( 1) LVRKNPLAVSKI 33 ECI1 ( 1) RQLGSKQRKHRL 35 HAO1 ( 1) LVRKNPLAVSKI 33 ACOX1 ( 1) SYKHLKSLQSKL 26 LONP ( 1) VKTRPGLLNSKL 30 mmEch1 ( 1) KRDTKSITFSKL 34 mm5330420D20Rik ( 1) HTLRTPASLSKL 27 PIPOX ( 1) ISRFPSLGKAHL 35 mmNudt7 ( 1) RTFLWRYSLSKL 53 GPK1 ( 1) NKDNDITTDAKI 55 mmPeci ( 1) AIMSFVSRKPKL 38 GTO1 ( 1) VPLGPKPDISRL 38 ACOX ( 1) FNWVEANAWSSL 79 AMACR ( 1) KIIESNKVKASL 43 LYS1 ( 1) RHCARVKRSSRL 58 CAT ( 1) GSHLAAREKANL 48 mmIdi1 ( 1) SPFVDHEKIHRL 64 mmCat ( 1) TGEPVELKTQAL 100 //
Enter your protein or DNA sequence in FASTA format: