Do-It-Yourself Block Search aligns a set of Blocks with a protein or DNA sequence. You can make blocks from unaligned protein sequences with Block Maker. If you need to convert another multiple alignment to BLOCKS format, use the Multiple Alignment Processor or the Block Formatter.
Enter your Blocks in BLOCKS format: ID x9763xbli; BLOCK AC x9763xbliA; distance from previous block=(1,1) DE ../tmp/PTS2.blin BL UNK; width=9; seqs=9; 99.5%=498; strength=1289 MM_ ( 1) RLQVVLGHL 43 RN_Acaa1 ( 1) RLQVVLGHL 43 HS_ACAA1 ( 1) RLQVVLGHL 43 PAHX ( 1) RLQIVLGHL 48 MM_Pahx ( 1) RLQVLLGHL 43 SC_POT1 ( 1) RLQSIKDHL 98 AGPS ( 1) RLRVLSGHL 68 KL_ ( 1) RLQQLEKHL 82 AT_AT1G04710 ( 1) RQRILLRHL 100 //
Enter your protein or DNA sequence in FASTA format: