Do-It-Yourself Block Search aligns a set of Blocks with a protein or DNA sequence. You can make blocks from unaligned protein sequences with Block Maker. If you need to convert another multiple alignment to BLOCKS format, use the Multiple Alignment Processor or the Block Formatter.
Enter your Blocks in BLOCKS format: ID x20852xbl; BLOCK AC x20852xblA; distance from previous block=(1,1) DE ../tmp/20852.blin BL UNK; width=12; seqs=44; 99.5%=873; strength=982 YPR128C_287301 ( 1) VQGXLLFAFRGE 39 ENSG00000119688_58 ( 1) FHSXLVLKLCGG 59 YMR026C_276290 ( 1) FFPTFIFVLRVY 71 ENSG00000117528_59 ( 1) FFSRLIXQILKI 51 YOL044W_135149 ( 1) FFRCCIKVIQFN 82 ENSG00000173208_80 ( 1) FFKXQLLELRKI 45 YJL210W_6377 ( 1) LSGXVVFQCRKR 66 ENSG00000157911_23 ( 1) VISXLLHLVLSM 61 ENSG00000164751_14 ( 1) LINFLIFLQRGX 70 ENSG00000157911_15 ( 1) LLRXAVFVLRQG 40 YNL214W_7387 ( 1) LRRXIIAQLQKR 42 ENSG00000119688_31 ( 1) LISXCFTQLIDL 74 YOR193W_171185 ( 1) LYKXIIKRFRWL 52 YPL112C_372386 ( 1) LTGXLVKLWITT 50 YKL188C_121135 ( 1) FITQAILLNXXX 48 YOL044W_184198 ( 1) LIEIFIFQVXXX 57 YMR026C_184198 ( 1) FIKXKLLALSXX 40 YPL147W_3347 ( 1) YFKLLIRHLLQI 83 YGR077C_5569 ( 1) FIVXQLPPLRLL 58 YGR077C_283297 ( 1) FILXIILALKEL 47 YOL044W_338352 ( 1) LTGXLLLLLCLK 34 YPL112CX139153 ( 1) VLXXLLSLLRNF 32 ENSG00000121680_11 ( 1) LRMXLLLLWFKA 45 ENSG00000108733_58 ( 1) IFTXLLDLLLQQ 64 YOR193WX126140 ( 1) TLGXLLSLLLLT 32 ENSG00000104883_12 ( 1) TLWXALSLLLGX 45 YJL210W_7791 ( 1) VVTXVLAGYVWK 83 YPL147W_207221 ( 1) LTAQIFFLVMRT 91 YPL147W_361375 ( 1) FITGFILRKXXX 60 ENSG00000101986_68 ( 1) LQRXLLWLLRXL 33 ENSG00000166821_17 ( 1) LQSXFLLLLFRS 44 ENSG00000176876_10 ( 1) LRRLLLDRLVFX 52 ENSG00000164751_19 ( 1) FLIXFLLPLINV 53 ENSG00000104883_14 ( 1) LWMXLLKLRQRL 52 YDR329C_2842 ( 1) TGSVVVFFVKRW 100 ENSG00000119688_39 ( 1) FLTXLLCLTLLE 53 ENSG00000131779_23 ( 1) LVSXSILSILTL 65 YLR191W_200214 ( 1) FLKXKILYRAXX 51 ENSG00000100372_27 ( 1) LLQTVLTAALMF 77 ENSG00000162928_17 ( 1) AFAXLVRTIRYL 89 YNL329C_255269 ( 1) VRLVKLFVLLLX 44 YGR077C_168182 ( 1) QHCXLLIALAXL 82 YOL147C_2842 ( 1) LLQXYLARFLAV 67 ENSG00000131779_18 ( 1) LKLXRLQVLLLA 73 //
Enter your protein or DNA sequence in FASTA format: